Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.52998 * 109.46931 * 119.99562 * 2 1 3 5 5 C 1.53008 * 109.47341 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46911 * 300.00390 * 5 4 2 7 7 C 1.52997 * 109.47578 * 60.00035 * 6 5 4 8 8 C 1.52999 * 109.47402 * 239.99902 * 2 1 3 9 9 H 1.08999 * 109.46608 * 299.99863 * 8 2 1 10 10 C 1.52998 * 109.47355 * 59.99920 * 8 2 1 11 11 N 1.46896 * 109.47188 * 183.78034 * 10 8 2 12 12 C 1.46899 * 110.99850 * 75.56518 * 11 10 8 13 13 C 1.53238 * 109.36426 * 187.23502 * 12 11 10 14 14 N 1.47083 * 108.52132 * 306.21874 * 13 12 11 15 15 C 1.36937 * 120.86014 * 231.12003 * 14 13 12 16 16 H 1.08003 * 119.99890 * 28.88465 * 15 14 13 17 17 C 1.38812 * 120.00075 * 208.88967 * 15 14 13 18 18 N 1.31620 * 119.99636 * 13.58105 * 17 15 14 19 19 Si 1.86797 * 120.00335 * 193.57955 * 17 15 14 20 20 H 1.48508 * 109.46851 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47370 * 120.00103 * 19 17 15 22 22 H 1.48499 * 109.47119 * 240.00249 * 19 17 15 23 23 C 1.47081 * 118.26030 * 51.13244 * 14 13 12 24 24 C 1.46903 * 110.99945 * 199.86639 * 11 10 8 25 25 H 1.09000 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47444 * 300.00451 * 1 2 3 27 27 H 1.09006 * 109.47109 * 60.00283 * 1 2 3 28 28 H 1.08998 * 109.47766 * 300.00361 * 4 2 1 29 29 H 1.09008 * 109.46981 * 60.00483 * 4 2 1 30 30 H 1.09000 * 109.46924 * 60.00345 * 5 4 2 31 31 H 1.08991 * 109.47051 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.46806 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47289 * 299.99731 * 6 5 4 34 34 H 1.08998 * 109.47907 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47364 * 59.98855 * 7 6 5 36 36 H 1.09000 * 109.46697 * 63.78021 * 10 8 2 37 37 H 1.09000 * 109.46772 * 303.78329 * 10 8 2 38 38 H 1.08994 * 109.49749 * 307.21725 * 12 11 10 39 39 H 1.09003 * 109.49197 * 67.26916 * 12 11 10 40 40 H 1.09004 * 109.62463 * 65.89400 * 13 12 11 41 41 H 1.08995 * 109.63002 * 186.47320 * 13 12 11 42 42 H 0.97002 * 119.99810 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.62968 * 189.12872 * 23 14 13 44 44 H 1.09000 * 109.62923 * 68.54567 * 23 14 13 45 45 H 1.08999 * 109.49615 * 292.70866 * 24 11 10 46 46 H 1.08995 * 109.49137 * 52.76508 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2491 6 6 4.0794 -1.4434 -0.0001 7 6 3.5696 -0.7222 -1.2494 8 6 2.0400 -0.7213 -1.2492 9 1 1.6767 -1.7489 -1.2491 10 6 1.5301 -0.0001 -2.4985 11 7 1.9438 -0.7433 -3.6961 12 6 1.1237 -1.9485 -3.8772 13 6 1.6984 -2.7865 -5.0242 14 7 1.8178 -1.9302 -6.2141 15 6 1.2991 -2.3249 -7.4185 16 1 0.4395 -2.9781 -7.4482 17 6 1.8782 -1.8855 -8.6010 18 7 3.0661 -1.3192 -8.5813 19 14 0.9715 -2.0980 -10.2204 20 1 -0.3358 -2.7575 -9.9728 21 1 0.7448 -0.7673 -10.8391 22 1 1.7845 -2.9378 -11.1363 23 6 2.5092 -0.6394 -6.0766 24 6 1.9019 0.1139 -4.8883 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.6766 -0.2074 2.1393 29 1 1.6766 -1.7489 1.2493 30 1 3.9337 0.3058 1.2488 31 1 3.9332 -1.2359 2.1388 32 1 5.1695 -1.4434 -0.0005 33 1 3.7157 -2.4709 0.0001 34 1 3.9329 -1.2360 -2.1394 35 1 3.9332 0.3054 -1.2496 36 1 1.9477 1.0061 -2.5330 37 1 0.4422 0.0589 -2.4652 38 1 1.1315 -2.5352 -2.9587 39 1 0.1001 -1.6595 -4.1154 40 1 2.6822 -3.1637 -4.7449 41 1 1.0305 -3.6208 -5.2385 42 1 3.4709 -1.0124 -9.4078 43 1 2.3773 -0.0545 -6.9869 44 1 3.5709 -0.8098 -5.8981 45 1 0.8675 0.3743 -5.1129 46 1 2.4738 1.0231 -4.7029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183036734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -16.231540 kcal Electronic energy + Delta-G solvation = -21595.029023 eV Core-core repulsion = 18711.173248 eV Total energy + Delta-G solvation = -2883.855775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48011 -39.01106 -36.13990 -33.77216 -33.23660 -32.04527 -31.37788 -28.69388 -27.23363 -25.81235 -24.39378 -24.08832 -22.34799 -21.50970 -20.79999 -20.42257 -18.70978 -17.01280 -16.38783 -16.10647 -15.94814 -15.37632 -15.29150 -15.17657 -15.10685 -14.93327 -14.76349 -14.13077 -13.95480 -13.38261 -13.15603 -13.04816 -12.84357 -12.67859 -12.61060 -12.49436 -12.29741 -12.26998 -12.05647 -11.94825 -11.80735 -11.67961 -11.48122 -11.43029 -11.13434 -10.79561 -10.69557 -10.59805 -9.15535 -8.64576 -7.87686 -5.36053 1.45439 1.46384 1.57523 2.49734 3.02440 3.28421 3.68404 3.77026 3.90628 3.96946 4.15490 4.29936 4.34738 4.35185 4.46424 4.51946 4.58597 4.62226 4.66288 4.69917 4.72672 4.78012 4.80550 4.87384 4.93565 4.94950 5.01700 5.04955 5.14167 5.19911 5.25782 5.29073 5.36277 5.39037 5.41085 5.46355 5.54075 5.60363 5.65866 5.68793 5.73096 6.24348 6.35666 6.38856 7.13407 7.83036 8.38563 9.18926 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.004154 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.182710 B = 6739.147502 C = 6948.610860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.102 4.102 8 C -0.065 4.065 9 H 0.061 0.939 10 C 0.059 3.941 11 N -0.535 5.535 12 C 0.059 3.941 13 C 0.145 3.855 14 N -0.614 5.614 15 C -0.266 4.266 16 H 0.066 0.934 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.189 3.811 24 C 0.052 3.948 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.088 0.912 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.055 0.945 44 H -0.003 1.003 45 H 0.016 0.984 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 3.288 20.324 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.139 4.139 8 C -0.084 4.084 9 H 0.079 0.921 10 C -0.069 4.069 11 N -0.260 5.260 12 C -0.070 4.070 13 C 0.020 3.980 14 N -0.338 5.338 15 C -0.396 4.396 16 H 0.083 0.917 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.063 3.937 24 C -0.078 4.078 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.015 0.985 45 H 0.034 0.966 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.287 3.177 20.254 20.629 hybrid contribution -0.871 0.130 -1.544 1.778 sum -3.158 3.307 18.709 19.260 Atomic orbital electron populations 1.21880 0.95118 1.01754 1.01747 1.21105 0.95503 0.99438 0.94064 0.91262 1.21553 0.95420 1.00521 0.97129 1.21520 0.95716 1.00668 0.97414 1.21536 1.00074 0.99217 0.94745 1.21371 0.94893 1.00139 0.97536 1.21055 0.95648 0.98976 0.92707 0.92101 1.22297 0.97778 0.97078 0.89702 1.61851 1.54266 1.07080 1.02802 1.22426 0.93542 0.92406 0.98656 1.21112 0.97417 0.92775 0.86745 1.44369 1.66626 1.16880 1.05943 1.19568 1.07713 1.28102 0.84207 0.91665 1.25873 0.96116 1.01389 1.01134 1.70180 1.15525 1.45737 1.26798 0.85160 0.78261 0.77142 0.79592 1.19125 1.21534 1.21735 1.20585 0.92365 0.86216 0.94576 1.22575 0.98200 0.95742 0.91237 0.92968 0.91721 0.93182 0.90975 0.92275 0.91995 0.91318 0.92225 0.92593 0.93229 0.92825 0.91296 0.94603 0.89355 0.96312 0.96806 0.92409 0.94053 0.92703 0.98480 0.96612 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.85 71.98 0.64 -1.89 16 2 C -0.08 -1.49 2.25 -10.80 -0.02 -1.52 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.71 5.20 30.60 0.16 -1.55 16 5 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 6 C -0.12 -2.36 5.92 30.59 0.18 -2.18 16 7 C -0.10 -2.46 5.08 30.58 0.16 -2.31 16 8 C -0.06 -1.49 1.76 -10.81 -0.02 -1.51 16 9 H 0.06 1.51 6.70 -2.39 -0.02 1.49 16 10 C 0.06 1.61 4.16 86.30 0.36 1.96 16 11 N -0.54 -18.79 3.96 -895.28 -3.54 -22.33 16 12 C 0.06 2.11 5.45 86.38 0.47 2.59 16 13 C 0.15 6.38 6.69 86.35 0.58 6.96 16 14 N -0.61 -32.47 3.03 -698.11 -2.12 -34.58 16 15 C -0.27 -15.13 9.63 84.03 0.81 -14.32 16 16 H 0.07 3.62 7.87 -2.91 -0.02 3.59 16 17 C -0.05 -2.85 5.00 84.86 0.42 -2.43 16 18 N -0.94 -56.70 11.11 21.65 0.24 -56.46 16 19 Si 0.97 45.66 29.57 68.60 2.03 47.69 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 C 0.19 9.61 5.38 86.35 0.46 10.08 16 24 C 0.05 2.08 5.59 86.38 0.48 2.56 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.93 6.35 -2.38 -0.02 0.92 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.49 7.71 -2.39 -0.02 1.47 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.83 7.77 -2.39 -0.02 1.81 16 37 H 0.04 0.96 6.09 -2.39 -0.01 0.95 16 38 H 0.09 2.69 6.62 -2.39 -0.02 2.67 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.06 2.44 7.95 -2.39 -0.02 2.42 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.05 3.11 6.19 -2.38 -0.01 3.10 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 2.79 7.90 -2.39 -0.02 2.77 16 Total: -1.00 -63.09 339.33 2.37 -60.71 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.90 Total: 10.21 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.86 Total: -5.25 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -5.42 Total: -113.37 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -63.09 2.37 -60.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.483 kcal (2) G-P(sol) polarization free energy of solvation -63.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds