Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47108 * 2 1 4 4 C 1.53001 * 109.47466 * 120.00581 * 2 1 3 5 5 C 1.53002 * 109.47253 * 59.99574 * 4 2 1 6 6 C 1.53003 * 109.46672 * 60.00172 * 5 4 2 7 7 C 1.52992 * 109.47518 * 299.99746 * 6 5 4 8 8 C 1.53002 * 109.46942 * 60.00420 * 7 6 5 9 9 H 1.08993 * 109.47490 * 59.99784 * 8 7 6 10 10 C 1.53001 * 109.47253 * 180.02562 * 8 7 6 11 11 N 1.46896 * 109.46865 * 294.99800 * 10 8 7 12 12 C 1.46906 * 111.00060 * 294.29928 * 11 10 8 13 13 C 1.53237 * 109.34031 * 172.74506 * 12 11 10 14 14 N 1.47087 * 108.52252 * 53.83363 * 13 12 11 15 15 C 1.36931 * 120.88343 * 128.83414 * 14 13 12 16 16 H 1.08001 * 120.00128 * 206.56835 * 15 14 13 17 17 C 1.38817 * 119.99976 * 26.56720 * 15 14 13 18 18 N 1.31618 * 119.99672 * 17.01787 * 17 15 14 19 19 Si 1.86794 * 119.99871 * 197.01701 * 17 15 14 20 20 H 1.48497 * 109.47422 * 60.00147 * 19 17 15 21 21 H 1.48499 * 109.47275 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47220 * 299.99905 * 19 17 15 23 23 C 1.47083 * 118.23492 * 308.81676 * 14 13 12 24 24 C 1.46901 * 111.00266 * 169.99982 * 11 10 8 25 25 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46855 * 299.99335 * 1 2 3 27 27 H 1.08994 * 109.47487 * 59.99899 * 1 2 3 28 28 H 1.09002 * 109.46521 * 299.99691 * 4 2 1 29 29 H 1.09002 * 109.47077 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.46795 * 300.00580 * 5 4 2 31 31 H 1.08994 * 109.46850 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.46618 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47215 * 60.00429 * 6 5 4 34 34 H 1.08997 * 109.47628 * 300.00621 * 7 6 5 35 35 H 1.08996 * 109.47529 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.47193 * 175.00026 * 10 8 7 37 37 H 1.08999 * 109.47455 * 54.99729 * 10 8 7 38 38 H 1.08996 * 109.49115 * 292.70560 * 12 11 10 39 39 H 1.08998 * 109.48960 * 52.78995 * 12 11 10 40 40 H 1.08997 * 109.63104 * 294.12283 * 13 12 11 41 41 H 1.08995 * 109.63087 * 173.54069 * 13 12 11 42 42 H 0.97004 * 119.99471 * 180.02562 * 18 17 15 43 43 H 1.09011 * 109.62645 * 291.47221 * 23 14 13 44 44 H 1.08998 * 109.62857 * 170.89602 * 23 14 13 45 45 H 1.09001 * 109.49288 * 307.21561 * 24 11 10 46 46 H 1.09005 * 109.49038 * 67.26522 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5300 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0003 7 6 1.5299 -2.1638 -1.2494 8 6 2.0400 -0.7212 -1.2494 9 1 3.1299 -0.7212 -1.2494 10 6 1.5294 0.0003 -2.4982 11 7 2.1146 -0.6188 -3.6949 12 6 3.5690 -0.4155 -3.7351 13 6 4.1627 -1.2245 -4.8932 14 7 3.4501 -0.8643 -6.1285 15 6 4.1370 -0.4953 -7.2541 16 1 3.6725 0.1536 -7.9818 17 6 5.4305 -0.9553 -7.4598 18 7 5.8783 -1.9874 -6.7768 19 14 6.5353 -0.1095 -8.7061 20 1 6.7175 1.3131 -8.3211 21 1 7.8562 -0.7874 -8.7371 22 1 5.9105 -0.1821 -10.0513 23 6 1.9800 -0.9113 -6.1226 24 6 1.4722 -0.1147 -4.9161 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6767 -0.2075 2.1392 29 1 3.1300 -0.7209 1.2493 30 1 0.4400 -2.1638 1.2491 31 1 1.8930 -2.6776 2.1392 32 1 1.6770 -3.9128 0.0000 33 1 3.1300 -2.8850 -0.0003 34 1 0.4400 -2.1637 -1.2494 35 1 1.8928 -2.6777 -2.1394 36 1 1.8178 1.0505 -2.4545 37 1 0.4431 -0.0766 -2.5437 38 1 3.7843 0.6428 -3.8827 39 1 4.0089 -0.7490 -2.7953 40 1 4.0396 -2.2895 -4.6968 41 1 5.2216 -0.9889 -4.9995 42 1 6.7823 -2.3086 -6.9203 43 1 1.6471 -1.9464 -6.0444 44 1 1.5959 -0.4687 -7.0417 45 1 0.3915 -0.2301 -4.8328 46 1 1.7165 0.9395 -5.0469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183036776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = 4.617957 kcal Electronic energy + Delta-G solvation = -21721.271243 eV Core-core repulsion = 18838.319569 eV Total energy + Delta-G solvation = -2882.951673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60584 -37.61665 -34.43783 -32.20754 -31.62611 -30.36869 -29.85161 -27.37477 -26.32995 -24.35423 -22.70207 -22.44933 -22.00211 -20.62555 -18.99339 -18.25832 -16.71313 -15.76653 -15.40067 -14.68029 -14.53668 -14.24570 -13.96355 -13.90463 -13.45872 -13.33718 -13.15307 -12.84703 -12.53872 -12.44773 -12.06576 -11.68932 -11.55457 -11.39757 -11.19201 -11.06534 -10.94639 -10.71750 -10.64975 -10.43981 -10.21735 -10.16392 -9.95469 -9.84067 -9.80985 -9.64147 -9.45977 -8.45842 -7.68555 -6.61291 -5.73942 -3.14646 3.40659 3.46270 3.47553 4.41492 4.54035 4.69744 4.75838 4.89642 5.18461 5.27265 5.35844 5.39242 5.43006 5.50755 5.51458 5.60225 5.67906 5.73477 5.76181 5.84104 5.91541 5.95417 6.02264 6.06173 6.08386 6.16640 6.19517 6.22270 6.26872 6.30828 6.37000 6.41497 6.46298 6.59029 6.68373 6.73505 6.78367 6.99369 7.32432 7.70451 7.73911 7.78948 7.88876 8.48050 9.25876 9.89589 10.48479 11.34781 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.004394 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.552430 B = 6370.370314 C = 6671.329148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.105 4.105 8 C -0.077 4.077 9 H 0.071 0.929 10 C 0.059 3.941 11 N -0.529 5.529 12 C 0.034 3.966 13 C 0.179 3.821 14 N -0.595 5.595 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.149 3.851 24 C 0.045 3.955 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 2.210 15.134 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.142 4.142 8 C -0.096 4.096 9 H 0.089 0.911 10 C -0.069 4.069 11 N -0.254 5.254 12 C -0.095 4.095 13 C 0.053 3.947 14 N -0.319 5.319 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.023 3.977 24 C -0.085 4.085 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.455 1.621 15.109 17.897 hybrid contribution 0.792 1.349 -0.639 1.689 sum -8.663 2.970 14.470 17.124 Atomic orbital electron populations 1.21966 0.95593 1.02083 1.01083 1.21106 0.95824 0.98838 0.94800 0.91805 1.21536 1.00501 0.95756 0.97190 1.21567 1.00736 0.95590 0.97821 1.21560 1.00783 0.98622 0.94859 1.21469 1.00088 0.94887 0.97800 1.21163 1.00414 0.95328 0.92658 0.91081 1.22182 0.99000 0.95130 0.90633 1.61942 1.04751 1.57575 1.01123 1.22924 0.87123 0.98815 1.00635 1.20846 0.96842 0.94938 0.82069 1.44110 0.99392 1.79328 1.09033 1.19159 0.96906 1.22543 0.99542 0.91780 1.25003 0.99448 0.96351 0.98889 1.70027 1.17172 1.23475 1.44156 0.86378 0.80083 0.79137 0.81226 1.21161 1.21616 1.20927 1.20968 0.86082 0.96688 0.93995 1.22592 0.97085 0.97138 0.91638 0.91941 0.93413 0.92683 0.92523 0.92157 0.91976 0.92733 0.92466 0.92217 0.92471 0.90419 0.96005 0.91447 0.96066 0.91982 0.95680 0.89576 0.93629 0.95743 0.92821 0.92269 0.95719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.15 37.15 0.30 -1.17 16 2 C -0.09 -0.93 2.72 -90.62 -0.25 -1.18 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.11 5.45 -26.73 -0.15 -1.25 16 5 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 6 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 7 C -0.11 -1.34 4.82 -26.73 -0.13 -1.47 16 8 C -0.08 -0.99 1.89 -90.61 -0.17 -1.16 16 9 H 0.07 1.02 6.20 -51.93 -0.32 0.70 16 10 C 0.06 0.86 3.85 -3.83 -0.01 0.84 16 11 N -0.53 -9.52 4.08 -234.32 -0.96 -10.48 16 12 C 0.03 0.68 5.46 -3.70 -0.02 0.66 16 13 C 0.18 4.42 5.42 -3.60 -0.02 4.40 16 14 N -0.60 -15.43 3.04 -172.01 -0.52 -15.95 16 15 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 16 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 18 N -0.90 -26.61 11.15 55.49 0.62 -26.00 16 19 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.15 3.27 6.69 -3.60 -0.02 3.24 16 24 C 0.05 0.83 5.62 -3.70 -0.02 0.81 16 25 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.55 6.54 -51.93 -0.34 0.21 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 35 H 0.08 1.19 7.75 -51.93 -0.40 0.79 16 36 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 37 H 0.07 0.92 6.53 -51.93 -0.34 0.58 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.14 6.07 -51.93 -0.32 0.82 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.05 1.13 7.95 -51.93 -0.41 0.71 16 45 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -29.07 332.08 -10.32 -39.39 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.40 Total: -2.54 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.03 Total: -6.38 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.86 Total: -52.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.07 -10.32 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.009 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds