Wall clock time and date at job start Mon Mar 30 2020 01:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47108 * 2 1 4 4 C 1.53001 * 109.47466 * 120.00581 * 2 1 3 5 5 C 1.53002 * 109.47253 * 59.99574 * 4 2 1 6 6 C 1.53003 * 109.46672 * 60.00172 * 5 4 2 7 7 C 1.52992 * 109.47518 * 299.99746 * 6 5 4 8 8 C 1.53002 * 109.46942 * 60.00420 * 7 6 5 9 9 H 1.08993 * 109.47490 * 59.99784 * 8 7 6 10 10 C 1.53001 * 109.47253 * 180.02562 * 8 7 6 11 11 N 1.46896 * 109.46865 * 294.99800 * 10 8 7 12 12 C 1.46906 * 111.00060 * 294.29928 * 11 10 8 13 13 C 1.53237 * 109.34031 * 172.74506 * 12 11 10 14 14 N 1.47087 * 108.52252 * 53.83363 * 13 12 11 15 15 C 1.36931 * 120.88343 * 128.83414 * 14 13 12 16 16 H 1.08001 * 120.00128 * 206.56835 * 15 14 13 17 17 C 1.38817 * 119.99976 * 26.56720 * 15 14 13 18 18 N 1.31618 * 119.99672 * 17.01787 * 17 15 14 19 19 Si 1.86794 * 119.99871 * 197.01701 * 17 15 14 20 20 H 1.48497 * 109.47422 * 60.00147 * 19 17 15 21 21 H 1.48499 * 109.47275 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47220 * 299.99905 * 19 17 15 23 23 C 1.47083 * 118.23492 * 308.81676 * 14 13 12 24 24 C 1.46901 * 111.00266 * 169.99982 * 11 10 8 25 25 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46855 * 299.99335 * 1 2 3 27 27 H 1.08994 * 109.47487 * 59.99899 * 1 2 3 28 28 H 1.09002 * 109.46521 * 299.99691 * 4 2 1 29 29 H 1.09002 * 109.47077 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.46795 * 300.00580 * 5 4 2 31 31 H 1.08994 * 109.46850 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.46618 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47215 * 60.00429 * 6 5 4 34 34 H 1.08997 * 109.47628 * 300.00621 * 7 6 5 35 35 H 1.08996 * 109.47529 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.47193 * 175.00026 * 10 8 7 37 37 H 1.08999 * 109.47455 * 54.99729 * 10 8 7 38 38 H 1.08996 * 109.49115 * 292.70560 * 12 11 10 39 39 H 1.08998 * 109.48960 * 52.78995 * 12 11 10 40 40 H 1.08997 * 109.63104 * 294.12283 * 13 12 11 41 41 H 1.08995 * 109.63087 * 173.54069 * 13 12 11 42 42 H 0.97004 * 119.99471 * 180.02562 * 18 17 15 43 43 H 1.09011 * 109.62645 * 291.47221 * 23 14 13 44 44 H 1.08998 * 109.62857 * 170.89602 * 23 14 13 45 45 H 1.09001 * 109.49288 * 307.21561 * 24 11 10 46 46 H 1.09005 * 109.49038 * 67.26522 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5300 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0003 7 6 1.5299 -2.1638 -1.2494 8 6 2.0400 -0.7212 -1.2494 9 1 3.1299 -0.7212 -1.2494 10 6 1.5294 0.0003 -2.4982 11 7 2.1146 -0.6188 -3.6949 12 6 3.5690 -0.4155 -3.7351 13 6 4.1627 -1.2245 -4.8932 14 7 3.4501 -0.8643 -6.1285 15 6 4.1370 -0.4953 -7.2541 16 1 3.6725 0.1536 -7.9818 17 6 5.4305 -0.9553 -7.4598 18 7 5.8783 -1.9874 -6.7768 19 14 6.5353 -0.1095 -8.7061 20 1 6.7175 1.3131 -8.3211 21 1 7.8562 -0.7874 -8.7371 22 1 5.9105 -0.1821 -10.0513 23 6 1.9800 -0.9113 -6.1226 24 6 1.4722 -0.1147 -4.9161 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6767 -0.2075 2.1392 29 1 3.1300 -0.7209 1.2493 30 1 0.4400 -2.1638 1.2491 31 1 1.8930 -2.6776 2.1392 32 1 1.6770 -3.9128 0.0000 33 1 3.1300 -2.8850 -0.0003 34 1 0.4400 -2.1637 -1.2494 35 1 1.8928 -2.6777 -2.1394 36 1 1.8178 1.0505 -2.4545 37 1 0.4431 -0.0766 -2.5437 38 1 3.7843 0.6428 -3.8827 39 1 4.0089 -0.7490 -2.7953 40 1 4.0396 -2.2895 -4.6968 41 1 5.2216 -0.9889 -4.9995 42 1 6.7823 -2.3086 -6.9203 43 1 1.6471 -1.9464 -6.0444 44 1 1.5959 -0.4687 -7.0417 45 1 0.3915 -0.2301 -4.8328 46 1 1.7165 0.9395 -5.0469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183036776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:20 Heat of formation + Delta-G solvation = -11.240522 kcal Electronic energy + Delta-G solvation = -21721.958918 eV Core-core repulsion = 18838.319569 eV Total energy + Delta-G solvation = -2883.639349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68562 -39.12789 -36.17191 -33.65822 -32.80331 -31.75922 -31.62484 -28.75012 -27.53061 -25.86301 -24.31656 -24.13192 -22.97649 -21.73991 -20.76475 -19.19775 -18.70238 -17.10373 -16.64209 -16.35785 -15.92903 -15.39795 -15.34862 -15.31075 -15.06845 -14.91090 -14.61716 -14.18935 -13.64905 -13.47948 -13.25825 -13.18908 -12.95348 -12.65906 -12.59301 -12.45581 -12.34259 -12.15537 -12.07369 -11.94630 -11.86699 -11.69047 -11.43785 -11.35775 -10.94689 -10.76017 -10.69758 -10.57464 -9.19628 -8.68083 -7.88124 -5.32917 1.45568 1.48099 1.55201 2.50256 3.02642 3.27191 3.67477 3.76708 3.88875 3.94358 4.21129 4.31058 4.35797 4.39833 4.47432 4.49472 4.53729 4.58135 4.61969 4.67175 4.71705 4.79583 4.82833 4.88020 4.91795 4.95368 5.04988 5.07701 5.14227 5.20465 5.25302 5.28545 5.33647 5.36259 5.40910 5.46487 5.55633 5.59499 5.66782 5.67391 5.77125 6.22962 6.35007 6.37343 7.12473 7.83405 8.38100 9.18607 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.004394 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.552430 B = 6370.370314 C = 6671.329148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.100 4.100 8 C -0.073 4.073 9 H 0.052 0.948 10 C 0.063 3.937 11 N -0.535 5.535 12 C 0.054 3.946 13 C 0.188 3.812 14 N -0.614 5.614 15 C -0.268 4.268 16 H 0.067 0.933 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.145 3.855 24 C 0.055 3.945 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.022 0.978 37 H 0.085 0.915 38 H 0.012 0.988 39 H 0.077 0.923 40 H -0.003 1.003 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.015 0.985 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 3.349 16.443 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.137 4.137 8 C -0.092 4.092 9 H 0.070 0.930 10 C -0.064 4.064 11 N -0.260 5.260 12 C -0.076 4.076 13 C 0.062 3.938 14 N -0.338 5.338 15 C -0.398 4.398 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.200 1.200 23 C 0.019 3.981 24 C -0.074 4.074 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.103 0.897 38 H 0.030 0.970 39 H 0.095 0.905 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.051 2.773 16.429 19.993 hybrid contribution 1.224 0.948 -1.049 1.870 sum -9.827 3.721 15.380 18.627 Atomic orbital electron populations 1.21944 0.94417 1.02349 1.01746 1.21071 0.96726 0.98531 0.93851 0.91797 1.21539 1.00138 0.95900 0.97319 1.21541 1.01224 0.95306 0.97172 1.21545 1.00117 0.99048 0.95058 1.21386 1.00522 0.94591 0.97240 1.21122 0.99270 0.95611 0.93184 0.92951 1.22257 0.99756 0.94973 0.89454 1.61898 1.03343 1.58375 1.02385 1.22554 0.88779 0.97104 0.99140 1.20582 0.95559 0.93954 0.83681 1.44395 1.01139 1.79433 1.08873 1.19521 0.97592 1.22468 1.00207 0.91517 1.25798 1.00724 0.96942 1.01100 1.70194 1.17180 1.24906 1.45903 0.85315 0.77836 0.78012 0.79122 1.20516 1.21838 1.19993 1.21125 0.83924 0.96858 0.96192 1.22453 0.98776 0.95881 0.90295 0.91824 0.91967 0.92876 0.90853 0.92877 0.91064 0.91614 0.91978 0.93343 0.91508 0.93587 0.95980 0.89670 0.96980 0.90487 0.98524 0.92773 0.94055 0.96659 0.92235 0.88859 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.15 71.98 0.59 -1.82 16 2 C -0.08 -1.58 2.72 -10.79 -0.03 -1.61 16 3 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.11 -1.91 5.45 30.60 0.17 -1.75 16 5 C -0.12 -1.94 5.65 30.60 0.17 -1.77 16 6 C -0.12 -2.54 5.92 30.59 0.18 -2.36 16 7 C -0.10 -2.44 4.82 30.59 0.15 -2.30 16 8 C -0.07 -1.79 1.89 -10.79 -0.02 -1.81 16 9 H 0.05 1.48 6.20 -2.39 -0.01 1.46 16 10 C 0.06 1.72 3.85 86.30 0.33 2.05 16 11 N -0.54 -18.83 4.08 -895.26 -3.66 -22.49 16 12 C 0.05 2.18 5.46 86.38 0.47 2.65 16 13 C 0.19 9.66 5.42 86.35 0.47 10.13 16 14 N -0.61 -32.56 3.04 -698.11 -2.12 -34.68 16 15 C -0.27 -15.29 9.63 84.04 0.81 -14.48 16 16 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 17 C -0.05 -2.89 4.94 84.86 0.42 -2.47 16 18 N -0.94 -56.90 11.15 21.65 0.24 -56.66 16 19 Si 0.97 45.77 29.59 68.60 2.03 47.80 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.14 6.32 6.69 86.35 0.58 6.90 16 24 C 0.06 1.96 5.62 86.38 0.49 2.45 16 25 H 0.06 1.03 4.81 -2.39 -0.01 1.02 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.89 6.54 -2.39 -0.02 0.87 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.50 6.43 -2.39 -0.02 1.48 16 35 H 0.05 1.42 7.75 -2.39 -0.02 1.40 16 36 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 37 H 0.09 2.06 6.53 -2.39 -0.02 2.05 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 2.88 6.07 -2.39 -0.01 2.86 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.05 3.10 6.12 -2.39 -0.01 3.08 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.06 2.48 7.95 -2.39 -0.02 2.46 16 45 H 0.09 2.71 7.99 -2.39 -0.02 2.69 16 46 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -63.66 332.08 2.18 -61.48 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.92 Total: 10.73 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 4.77 Total: -6.19 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -5.54 Total: -113.83 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -63.66 2.18 -61.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.235 kcal (2) G-P(sol) polarization free energy of solvation -63.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds