Wall clock time and date at job start Mon Mar 30 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47291 * 240.00232 * 2 1 3 5 5 N 1.46499 * 109.47409 * 120.00086 * 2 1 3 6 6 C 1.35308 * 125.86944 * 74.99592 * 5 2 1 7 7 C 1.35347 * 106.17713 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.75515 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46939 * 94.99857 * 8 7 6 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47117 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47009 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99726 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99814 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00230 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47253 * 89.99909 * 17 15 13 19 19 H 1.48503 * 109.47130 * 210.00107 * 17 15 13 20 20 H 1.48504 * 109.47396 * 330.00030 * 17 15 13 21 21 N 1.33774 * 106.49812 * 0.02562 * 7 6 5 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.47087 * 299.99880 * 1 2 3 24 24 H 1.08997 * 109.47186 * 59.99928 * 1 2 3 25 25 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47201 * 300.00062 * 3 2 1 28 28 H 1.09004 * 109.47317 * 59.99668 * 3 2 1 29 29 H 1.09004 * 109.47015 * 299.99746 * 4 2 1 30 30 H 1.08997 * 109.47137 * 59.99809 * 4 2 1 31 31 H 1.08994 * 109.47145 * 180.02562 * 4 2 1 32 32 H 1.07997 * 126.91159 * 0.02959 * 6 5 2 33 33 H 1.09000 * 109.47363 * 214.99779 * 8 7 6 34 34 H 1.09004 * 109.47108 * 335.00124 * 8 7 6 35 35 H 1.00896 * 111.00288 * 56.05107 * 9 8 7 36 36 H 1.08998 * 109.47303 * 299.99909 * 10 9 8 37 37 H 1.09001 * 109.47373 * 59.99946 * 10 9 8 38 38 H 1.09002 * 109.46808 * 299.99517 * 11 10 9 39 39 H 1.09001 * 109.47194 * 59.99653 * 11 10 9 40 40 H 1.08998 * 109.47363 * 299.99766 * 12 11 10 41 41 H 1.09001 * 109.47309 * 59.99800 * 12 11 10 42 42 H 0.96997 * 120.00225 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0151 -2.0289 1.3958 7 6 2.5507 -2.2284 2.6227 8 6 2.7664 -3.5531 3.3080 9 7 4.1400 -4.0130 3.0634 10 6 4.3868 -5.3050 3.7175 11 6 5.8244 -5.7500 3.4413 12 6 6.0817 -7.0953 4.1230 13 6 7.4976 -7.5339 3.8505 14 1 8.1485 -6.9152 3.2507 15 6 7.9614 -8.7256 4.3661 16 7 9.1971 -9.1081 4.1287 17 14 6.8352 -9.7960 5.4029 18 1 6.1076 -10.7461 4.5236 19 1 7.6445 -10.5554 6.3897 20 1 5.8582 -8.9377 6.1198 21 7 2.8510 -1.0183 3.1075 22 7 2.5226 -0.1284 2.2385 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.6571 -2.7856 0.7135 33 1 2.6073 -3.4378 4.3801 34 1 2.0623 -4.2854 2.9129 35 1 4.8114 -3.3218 3.3626 36 1 4.2389 -5.2022 4.7924 37 1 3.6939 -6.0493 3.3249 38 1 5.9728 -5.8527 2.3663 39 1 6.5170 -5.0056 3.8342 40 1 5.9335 -6.9922 5.1979 41 1 5.3891 -7.8399 3.7305 42 1 9.5234 -9.9466 4.4910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190949730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:26 Heat of formation + Delta-G solvation = 78.916682 kcal Electronic energy + Delta-G solvation = -19552.878260 eV Core-core repulsion = 16569.608078 eV Total energy + Delta-G solvation = -2983.270182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.41394 -37.87315 -36.50612 -33.76088 -32.24348 -31.78886 -30.70985 -28.17822 -28.07277 -27.06580 -24.69743 -23.85961 -21.98394 -21.43746 -20.17338 -19.71613 -17.33779 -16.68832 -16.55970 -15.71676 -15.02383 -14.82248 -14.68556 -14.35207 -14.24578 -13.88670 -13.54971 -13.01558 -12.95381 -12.75342 -12.67455 -12.53070 -12.37547 -11.89628 -11.80268 -11.76975 -11.57335 -11.39082 -10.95510 -10.82316 -10.73503 -10.18899 -9.91380 -9.68929 -9.60463 -9.24307 -9.11755 -8.48946 -8.20442 -5.99276 -3.96771 1.51026 2.07709 2.45099 3.34162 3.41294 3.45464 3.83490 4.08857 4.19370 4.23935 4.49665 4.57955 4.77903 4.86402 4.88483 4.96570 5.04139 5.06885 5.14594 5.19710 5.34659 5.37107 5.40688 5.50015 5.55322 5.66089 5.71778 5.80106 5.94560 6.08204 6.22696 6.50355 6.59723 6.62150 6.97369 7.23304 7.40145 7.49064 7.60298 7.85555 8.46106 8.60433 9.06659 9.63389 11.14392 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.042006 B = 0.002712 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.418551 B =10320.860458 C =10474.472816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.285 5.285 6 C -0.032 4.032 7 C -0.014 4.014 8 C 0.144 3.856 9 N -0.687 5.687 10 C 0.057 3.943 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.266 1.266 21 N -0.268 5.268 22 N -0.087 5.087 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.186 0.814 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.344 0.656 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.014 0.986 41 H 0.011 0.989 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.259 19.067 -10.762 30.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.080 5.080 6 C -0.183 4.183 7 C -0.152 4.152 8 C 0.013 3.987 9 N -0.318 5.318 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 N -0.135 5.135 22 N -0.065 5.065 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.203 0.797 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.903 20.006 -10.681 30.843 hybrid contribution -0.726 -1.424 0.805 1.790 sum -21.629 18.582 -9.876 30.177 Atomic orbital electron populations 1.22249 0.91892 1.03646 1.03929 1.21144 0.95307 0.94108 0.81342 1.22001 1.02713 0.92256 1.03725 1.22257 1.02882 1.01242 0.95500 1.47618 1.40229 1.05656 1.14455 1.23232 1.08467 0.86401 1.00216 1.21907 1.03832 0.95308 0.94150 1.20083 0.92526 0.88840 0.97280 1.60571 1.02544 1.05888 1.62840 1.22167 0.99622 0.89756 0.95609 1.21440 0.92363 0.98578 1.01360 1.19545 0.97433 0.92560 0.95543 1.21167 0.96056 1.05684 1.32695 0.91042 1.25052 0.94958 0.97636 0.96023 1.69922 1.15718 1.22784 1.46055 0.86757 0.81057 0.80686 0.80641 1.20334 1.21474 1.19024 1.75069 1.18054 0.98237 1.22121 1.78232 1.14065 1.22189 0.92055 0.91346 0.89682 0.91345 0.91133 0.90208 0.90633 0.91058 0.89555 0.91010 0.79653 0.93572 0.89536 0.83793 0.95515 0.91344 0.91999 0.92974 0.96786 0.97041 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 8.73 37.16 0.32 -0.42 16 2 C 0.16 1.05 1.23 -131.82 -0.16 0.89 16 3 C -0.15 -0.89 8.05 37.16 0.30 -0.60 16 4 C -0.16 -0.79 8.29 37.16 0.31 -0.48 16 5 N -0.28 -2.93 3.18 -48.55 -0.15 -3.08 16 6 C -0.03 -0.33 10.63 -17.05 -0.18 -0.51 16 7 C -0.01 -0.18 6.76 -82.78 -0.56 -0.74 16 8 C 0.14 1.82 6.25 -4.98 -0.03 1.79 16 9 N -0.69 -10.24 6.49 -115.05 -0.75 -10.99 16 10 C 0.06 0.94 5.69 -3.82 -0.02 0.92 16 11 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 17 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 N -0.27 -4.05 12.41 33.29 0.41 -3.64 16 22 N -0.09 -1.18 12.18 60.35 0.74 -0.44 16 23 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 29 H 0.07 0.32 7.39 -51.93 -0.38 -0.06 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.19 1.36 7.59 -52.49 -0.40 0.96 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.34 5.33 8.72 -39.29 -0.34 4.99 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -33.98 345.29 -6.55 -40.53 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.39 Total: -1.85 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.71 Total: -15.44 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 1.02 Total: -45.89 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.98 -6.55 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190949730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.449 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds