Wall clock time and date at job start Mon Mar 30 2020 00:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47291 * 240.00232 * 2 1 3 5 5 N 1.46499 * 109.47409 * 120.00086 * 2 1 3 6 6 C 1.35308 * 125.86944 * 74.99592 * 5 2 1 7 7 C 1.35347 * 106.17713 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.75515 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46939 * 94.99857 * 8 7 6 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47117 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47009 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99726 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99814 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00230 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47253 * 89.99909 * 17 15 13 19 19 H 1.48503 * 109.47130 * 210.00107 * 17 15 13 20 20 H 1.48504 * 109.47396 * 330.00030 * 17 15 13 21 21 N 1.33774 * 106.49812 * 0.02562 * 7 6 5 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.47087 * 299.99880 * 1 2 3 24 24 H 1.08997 * 109.47186 * 59.99928 * 1 2 3 25 25 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47201 * 300.00062 * 3 2 1 28 28 H 1.09004 * 109.47317 * 59.99668 * 3 2 1 29 29 H 1.09004 * 109.47015 * 299.99746 * 4 2 1 30 30 H 1.08997 * 109.47137 * 59.99809 * 4 2 1 31 31 H 1.08994 * 109.47145 * 180.02562 * 4 2 1 32 32 H 1.07997 * 126.91159 * 0.02959 * 6 5 2 33 33 H 1.09000 * 109.47363 * 214.99779 * 8 7 6 34 34 H 1.09004 * 109.47108 * 335.00124 * 8 7 6 35 35 H 1.00896 * 111.00288 * 56.05107 * 9 8 7 36 36 H 1.08998 * 109.47303 * 299.99909 * 10 9 8 37 37 H 1.09001 * 109.47373 * 59.99946 * 10 9 8 38 38 H 1.09002 * 109.46808 * 299.99517 * 11 10 9 39 39 H 1.09001 * 109.47194 * 59.99653 * 11 10 9 40 40 H 1.08998 * 109.47363 * 299.99766 * 12 11 10 41 41 H 1.09001 * 109.47309 * 59.99800 * 12 11 10 42 42 H 0.96997 * 120.00225 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0151 -2.0289 1.3958 7 6 2.5507 -2.2284 2.6227 8 6 2.7664 -3.5531 3.3080 9 7 4.1400 -4.0130 3.0634 10 6 4.3868 -5.3050 3.7175 11 6 5.8244 -5.7500 3.4413 12 6 6.0817 -7.0953 4.1230 13 6 7.4976 -7.5339 3.8505 14 1 8.1485 -6.9152 3.2507 15 6 7.9614 -8.7256 4.3661 16 7 9.1971 -9.1081 4.1287 17 14 6.8352 -9.7960 5.4029 18 1 6.1076 -10.7461 4.5236 19 1 7.6445 -10.5554 6.3897 20 1 5.8582 -8.9377 6.1198 21 7 2.8510 -1.0183 3.1075 22 7 2.5226 -0.1284 2.2385 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.6571 -2.7856 0.7135 33 1 2.6073 -3.4378 4.3801 34 1 2.0623 -4.2854 2.9129 35 1 4.8114 -3.3218 3.3626 36 1 4.2389 -5.2022 4.7924 37 1 3.6939 -6.0493 3.3249 38 1 5.9728 -5.8527 2.3663 39 1 6.5170 -5.0056 3.8342 40 1 5.9335 -6.9922 5.1979 41 1 5.3891 -7.8399 3.7305 42 1 9.5234 -9.9466 4.4910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190949730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:25 Heat of formation + Delta-G solvation = 54.775169 kcal Electronic energy + Delta-G solvation = -19553.925115 eV Core-core repulsion = 16569.608078 eV Total energy + Delta-G solvation = -2984.317037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.27699 -38.51023 -37.72718 -35.54468 -33.85281 -32.71671 -32.04900 -29.12251 -28.42739 -28.22156 -26.06029 -24.63885 -23.59323 -22.37684 -21.76830 -20.56733 -18.89709 -17.94664 -17.38320 -16.93444 -16.38674 -15.87626 -15.68210 -15.51818 -15.08096 -14.93136 -14.70740 -14.57717 -13.84888 -13.62836 -13.43451 -13.32634 -13.26706 -13.10968 -12.80690 -12.64443 -12.52460 -12.47090 -12.38391 -12.04713 -11.78603 -11.74777 -11.55260 -11.44191 -11.26818 -10.97312 -10.74449 -10.20406 -9.36775 -8.27718 -6.32227 0.68457 1.37871 1.40566 1.41541 1.48600 1.52850 2.38665 3.07558 3.21292 3.40041 3.56583 3.65122 3.76907 3.90966 4.12654 4.25985 4.36284 4.43371 4.53505 4.57073 4.63356 4.66721 4.70106 4.72314 4.75621 4.78370 4.93387 4.94598 5.00205 5.05165 5.13399 5.15775 5.18786 5.29033 5.53450 5.63773 5.68316 5.78089 6.07267 6.30425 6.35790 6.76338 7.32282 7.54537 8.89514 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.042006 B = 0.002712 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.418551 B =10320.860458 C =10474.472816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 C -0.148 4.148 4 C -0.158 4.158 5 N -0.275 5.275 6 C -0.020 4.020 7 C -0.035 4.035 8 C 0.149 3.851 9 N -0.690 5.690 10 C 0.070 3.930 11 C -0.092 4.092 12 C -0.009 4.009 13 C -0.535 4.535 14 H 0.026 0.974 15 C -0.001 4.001 16 N -0.955 5.955 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.244 1.244 21 N -0.309 5.309 22 N -0.114 5.114 23 H 0.053 0.947 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.053 0.947 32 H 0.221 0.779 33 H 0.042 0.958 34 H 0.111 0.889 35 H 0.337 0.663 36 H 0.032 0.968 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.039 0.961 40 H 0.020 0.980 41 H 0.025 0.975 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.541 18.620 -11.570 32.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 C -0.206 4.206 4 C -0.216 4.216 5 N -0.070 5.070 6 C -0.172 4.172 7 C -0.174 4.174 8 C 0.018 3.982 9 N -0.321 5.321 10 C -0.058 4.058 11 C -0.130 4.130 12 C -0.047 4.047 13 C -0.573 4.573 14 H 0.045 0.955 15 C -0.197 4.197 16 N -0.596 5.596 17 Si 0.780 3.220 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.167 1.167 21 N -0.175 5.175 22 N -0.093 5.093 23 H 0.072 0.928 24 H 0.132 0.868 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.043 0.957 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.203 19.607 -11.503 33.205 hybrid contribution 0.355 -1.190 0.923 1.547 sum -23.848 18.418 -10.580 31.935 Atomic orbital electron populations 1.22258 0.90051 1.04282 1.04610 1.21630 0.96660 0.94089 0.80501 1.22024 1.01548 0.92464 1.04539 1.22289 1.01737 1.01984 0.95544 1.48044 1.38574 1.05915 1.14497 1.23721 1.06798 0.87014 0.99682 1.22090 1.05075 0.94875 0.95374 1.20125 0.91350 0.89364 0.97343 1.60544 1.03793 1.05165 1.62572 1.21926 0.96819 0.90902 0.96178 1.21268 0.95146 0.96507 1.00048 1.19489 0.94333 0.94692 0.96230 1.21545 0.98192 1.05471 1.32085 0.95518 1.26120 0.96720 0.99355 0.97541 1.70088 1.18123 1.23687 1.47683 0.85559 0.78992 0.78682 0.78795 1.18803 1.21143 1.16750 1.75007 1.19544 0.99369 1.23590 1.78153 1.15482 1.22520 0.93122 0.92813 0.86844 0.90724 0.92954 0.87080 0.92113 0.90184 0.86766 0.92810 0.76270 0.93944 0.87096 0.84553 0.94980 0.89778 0.93141 0.94212 0.96199 0.95714 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.73 71.98 0.63 -0.38 16 2 C 0.15 1.66 1.23 3.61 0.00 1.67 16 3 C -0.15 -1.62 8.05 71.98 0.58 -1.04 16 4 C -0.16 -1.12 8.29 71.98 0.60 -0.52 16 5 N -0.28 -5.36 3.18 -307.52 -0.98 -6.34 16 6 C -0.02 -0.38 10.63 83.49 0.89 0.51 16 7 C -0.04 -0.88 6.76 41.60 0.28 -0.60 16 8 C 0.15 3.49 6.25 85.56 0.53 4.02 16 9 N -0.69 -19.65 6.49 -517.92 -3.36 -23.01 16 10 C 0.07 2.19 5.69 86.30 0.49 2.68 16 11 C -0.09 -3.70 5.41 30.59 0.17 -3.53 16 12 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 13 C -0.53 -31.97 9.66 25.60 0.25 -31.72 16 14 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 15 C 0.00 -0.07 5.47 84.66 0.46 0.39 16 16 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 17 Si 0.96 44.87 27.47 68.60 1.88 46.75 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 21 N -0.31 -9.46 12.41 -48.60 -0.60 -10.06 16 22 N -0.11 -3.14 12.18 37.02 0.45 -2.69 16 23 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.84 8.03 -2.39 -0.02 0.82 16 29 H 0.08 0.44 7.39 -2.38 -0.02 0.43 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.22 2.41 7.59 -2.91 -0.02 2.39 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.34 10.40 8.72 -89.70 -0.78 9.61 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 41 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 42 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -76.43 345.29 2.83 -73.60 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.14 Total: 11.83 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 5.00 Total: -28.86 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.19 Total: -103.33 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -76.43 2.83 -73.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190949730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.374 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds