Wall clock time and date at job start Mon Mar 30 2020 00:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 H 1.07994 * 120.00692 * 119.99605 * 4 2 1 6 6 C 1.37884 * 119.99565 * 300.00147 * 4 2 1 7 7 N 1.31517 * 120.00039 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47216 * 59.99545 * 8 6 4 10 10 H 1.48492 * 109.47327 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47102 * 300.00212 * 8 6 4 12 12 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 13 13 C 1.46901 * 110.99788 * 183.95405 * 12 2 1 14 14 C 1.46901 * 110.99790 * 60.00351 * 12 2 1 15 15 C 1.50701 * 109.46921 * 189.99765 * 14 12 2 16 16 C 1.35354 * 126.75025 * 94.99969 * 15 14 12 17 17 N 1.35310 * 106.17533 * 180.02562 * 16 15 14 18 18 C 1.46502 * 125.86849 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.46892 * 74.99921 * 18 17 16 20 20 C 1.52997 * 109.46995 * 194.99797 * 18 17 16 21 21 C 1.53002 * 109.46869 * 314.99981 * 18 17 16 22 22 N 1.28715 * 108.26114 * 359.97438 * 17 16 15 23 23 N 1.28634 * 110.17994 * 359.72346 * 22 17 16 24 24 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 26 26 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 27 27 H 0.96998 * 119.99780 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47121 * 296.04690 * 13 12 2 29 29 H 1.09005 * 109.47342 * 56.04784 * 13 12 2 30 30 H 1.08999 * 109.46894 * 176.04703 * 13 12 2 31 31 H 1.09002 * 109.47401 * 69.99793 * 14 12 2 32 32 H 1.09001 * 109.46874 * 309.99805 * 14 12 2 33 33 H 1.07998 * 126.90864 * 0.03203 * 16 15 14 34 34 H 1.08997 * 109.47385 * 60.00303 * 19 18 17 35 35 H 1.09002 * 109.47156 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47311 * 299.99808 * 19 18 17 37 37 H 1.08996 * 109.47155 * 60.00267 * 20 18 17 38 38 H 1.09002 * 109.47225 * 179.97438 * 20 18 17 39 39 H 1.08997 * 109.47402 * 299.99770 * 20 18 17 40 40 H 1.09002 * 109.47360 * 60.00177 * 21 18 17 41 41 H 1.09002 * 109.46793 * 180.02562 * 21 18 17 42 42 H 1.08996 * 109.47300 * 299.99744 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0083 10 1 1.8268 -0.4199 5.2204 11 1 1.8257 -2.5202 4.0077 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8581 -0.8911 -3.6159 16 6 1.0266 -1.7781 -4.2107 17 7 1.7243 -2.3202 -5.2355 18 6 1.2301 -3.3366 -6.1677 19 6 0.2645 -2.6896 -7.1625 20 6 2.4092 -3.9492 -6.9262 21 6 0.5007 -4.4323 -5.3877 22 7 2.8969 -1.7895 -5.2504 23 7 3.0065 -0.9286 -4.3009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1618 3.4843 28 1 3.9193 0.2044 -1.2299 29 1 3.8070 -1.2915 -0.2718 30 1 3.8165 -1.3721 -2.0499 31 1 2.0520 0.9346 -2.5280 32 1 0.4723 0.1324 -2.3564 33 1 0.0105 -2.0069 -3.9250 34 1 0.7841 -1.9091 -7.7182 35 1 -0.1036 -3.4459 -7.8559 36 1 -0.5755 -2.2532 -6.6221 37 1 3.0971 -4.4101 -6.2175 38 1 2.0416 -4.7058 -7.6195 39 1 2.9288 -3.1687 -7.4818 40 1 -0.3393 -3.9958 -4.8474 41 1 0.1334 -5.1887 -6.0813 42 1 1.1886 -4.8932 -4.6790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191324586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:56 Heat of formation + Delta-G solvation = 102.589200 kcal Electronic energy + Delta-G solvation = -20819.092947 eV Core-core repulsion = 17836.849283 eV Total energy + Delta-G solvation = -2982.243665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.02987 -37.67168 -36.77460 -33.02955 -31.66329 -31.13968 -29.02216 -27.98403 -27.85267 -26.71880 -24.61970 -23.60000 -23.17233 -20.99590 -19.78504 -19.09001 -17.03869 -16.22935 -16.20001 -15.19230 -14.64959 -14.51060 -14.31397 -13.98488 -13.82125 -13.61678 -12.90301 -12.76911 -12.65975 -12.41651 -12.27152 -12.16309 -11.69529 -11.65155 -11.58942 -11.23408 -11.02915 -10.95698 -10.70292 -10.59416 -10.39985 -10.12528 -9.95869 -9.82031 -9.72625 -8.92754 -8.74523 -8.36391 -7.10080 -5.97132 -4.00963 1.88537 2.40884 2.90342 3.35504 3.39319 3.42813 4.09184 4.32606 4.42972 4.45245 4.67637 5.05963 5.09510 5.15085 5.25830 5.28519 5.30969 5.33906 5.39559 5.41980 5.49170 5.62559 5.73839 5.78169 5.93100 6.17663 6.34679 6.45489 6.52847 6.62113 6.86627 6.88733 6.98140 7.07683 7.19882 7.56906 7.76442 7.87479 8.25108 8.37667 8.65105 8.85951 9.05396 9.63599 11.09770 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.032986 B = 0.004080 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.650993 B = 6861.286058 C = 6883.676794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.532 5.532 13 C 0.040 3.960 14 C 0.131 3.869 15 C 0.006 3.994 16 C -0.040 4.040 17 N -0.289 5.289 18 C 0.165 3.835 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.160 4.160 22 N -0.095 5.095 23 N -0.268 5.268 24 H 0.034 0.966 25 H 0.085 0.915 26 H 0.009 0.991 27 H 0.260 0.740 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.184 0.816 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -8.504 -18.236 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.257 5.257 13 C -0.109 4.109 14 C 0.000 4.000 15 C -0.132 4.132 16 C -0.191 4.191 17 N -0.084 5.084 18 C 0.082 3.918 19 C -0.217 4.217 20 C -0.205 4.205 21 C -0.218 4.218 22 N -0.074 5.074 23 N -0.135 5.135 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.201 0.799 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.492 -8.828 -18.800 20.919 hybrid contribution -0.514 0.239 1.376 1.488 sum -3.006 -8.589 -17.425 19.658 Atomic orbital electron populations 1.21867 0.97773 0.99601 0.99904 1.19263 0.92271 0.92154 0.85739 0.98243 1.21114 1.30922 1.12248 0.89712 0.91931 1.24917 0.95247 0.95092 0.98938 1.69881 1.37015 1.23014 1.23455 0.86590 0.79134 0.79710 0.82135 1.20348 1.21386 1.20289 1.62146 1.09952 1.52303 1.01339 1.22201 0.88220 0.99069 1.01372 1.20373 1.00981 0.92546 0.86059 1.22076 0.90549 1.00886 0.99650 1.23187 1.01665 1.00944 0.93286 1.47517 1.10118 1.28738 1.22043 1.21051 0.95820 0.86317 0.88564 1.22237 0.98871 1.01833 0.98714 1.21977 0.96553 1.01492 1.00524 1.22246 1.01092 0.97527 1.00971 1.78169 1.01807 1.08434 1.18964 1.75057 1.22073 1.13395 1.03006 0.94674 0.89604 0.97258 0.92977 0.96985 0.90868 0.93366 0.94262 0.89229 0.79904 0.91423 0.89938 0.91341 0.91240 0.90461 0.90712 0.91022 0.89834 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.76 37.16 0.33 -2.87 16 2 C 0.21 5.41 2.06 -68.86 -0.14 5.27 16 3 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 4 C -0.50 -13.89 7.88 -34.44 -0.27 -14.16 16 5 H 0.06 1.74 6.41 -52.49 -0.34 1.41 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.99 4.61 -237.72 -1.10 -13.09 16 13 C 0.04 0.89 9.08 60.07 0.55 1.43 16 14 C 0.13 2.53 5.34 -4.97 -0.03 2.51 16 15 C 0.01 0.12 5.95 -82.78 -0.49 -0.38 16 16 C -0.04 -0.59 10.63 -17.05 -0.18 -0.77 16 17 N -0.29 -3.92 3.18 -48.55 -0.15 -4.07 16 18 C 0.17 1.50 1.23 -131.82 -0.16 1.34 16 19 C -0.16 -1.12 8.72 37.16 0.32 -0.80 16 20 C -0.15 -1.22 8.05 37.16 0.30 -0.92 16 21 C -0.16 -1.20 8.29 37.16 0.31 -0.90 16 22 N -0.10 -1.60 12.18 60.35 0.74 -0.87 16 23 N -0.27 -5.11 11.46 33.29 0.38 -4.73 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 26 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 1.69 6.10 -51.93 -0.32 1.37 16 30 H 0.05 1.03 6.56 -51.93 -0.34 0.68 16 31 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.09 1.62 5.83 -51.93 -0.30 1.32 16 33 H 0.18 2.14 7.59 -52.49 -0.40 1.74 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.68 8.03 -51.93 -0.42 0.27 16 40 H 0.07 0.53 7.39 -51.93 -0.38 0.14 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -31.47 332.94 -6.00 -37.46 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.92 Total: -2.61 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.43 Total: -8.70 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.49 Total: -47.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.47 -6.00 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191324586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.052 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds