Wall clock time and date at job start Mon Mar 30 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 H 1.07994 * 120.00692 * 119.99605 * 4 2 1 6 6 C 1.37884 * 119.99565 * 300.00147 * 4 2 1 7 7 N 1.31517 * 120.00039 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47216 * 59.99545 * 8 6 4 10 10 H 1.48492 * 109.47327 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47102 * 300.00212 * 8 6 4 12 12 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 13 13 C 1.46901 * 110.99788 * 183.95405 * 12 2 1 14 14 C 1.46901 * 110.99790 * 60.00351 * 12 2 1 15 15 C 1.50701 * 109.46921 * 189.99765 * 14 12 2 16 16 C 1.35354 * 126.75025 * 94.99969 * 15 14 12 17 17 N 1.35310 * 106.17533 * 180.02562 * 16 15 14 18 18 C 1.46502 * 125.86849 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.46892 * 74.99921 * 18 17 16 20 20 C 1.52997 * 109.46995 * 194.99797 * 18 17 16 21 21 C 1.53002 * 109.46869 * 314.99981 * 18 17 16 22 22 N 1.28715 * 108.26114 * 359.97438 * 17 16 15 23 23 N 1.28634 * 110.17994 * 359.72346 * 22 17 16 24 24 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 26 26 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 27 27 H 0.96998 * 119.99780 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47121 * 296.04690 * 13 12 2 29 29 H 1.09005 * 109.47342 * 56.04784 * 13 12 2 30 30 H 1.08999 * 109.46894 * 176.04703 * 13 12 2 31 31 H 1.09002 * 109.47401 * 69.99793 * 14 12 2 32 32 H 1.09001 * 109.46874 * 309.99805 * 14 12 2 33 33 H 1.07998 * 126.90864 * 0.03203 * 16 15 14 34 34 H 1.08997 * 109.47385 * 60.00303 * 19 18 17 35 35 H 1.09002 * 109.47156 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47311 * 299.99808 * 19 18 17 37 37 H 1.08996 * 109.47155 * 60.00267 * 20 18 17 38 38 H 1.09002 * 109.47225 * 179.97438 * 20 18 17 39 39 H 1.08997 * 109.47402 * 299.99770 * 20 18 17 40 40 H 1.09002 * 109.47360 * 60.00177 * 21 18 17 41 41 H 1.09002 * 109.46793 * 180.02562 * 21 18 17 42 42 H 1.08996 * 109.47300 * 299.99744 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0083 10 1 1.8268 -0.4199 5.2204 11 1 1.8257 -2.5202 4.0077 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8581 -0.8911 -3.6159 16 6 1.0266 -1.7781 -4.2107 17 7 1.7243 -2.3202 -5.2355 18 6 1.2301 -3.3366 -6.1677 19 6 0.2645 -2.6896 -7.1625 20 6 2.4092 -3.9492 -6.9262 21 6 0.5007 -4.4323 -5.3877 22 7 2.8969 -1.7895 -5.2504 23 7 3.0065 -0.9286 -4.3009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1618 3.4843 28 1 3.9193 0.2044 -1.2299 29 1 3.8070 -1.2915 -0.2718 30 1 3.8165 -1.3721 -2.0499 31 1 2.0520 0.9346 -2.5280 32 1 0.4723 0.1324 -2.3564 33 1 0.0105 -2.0069 -3.9250 34 1 0.7841 -1.9091 -7.7182 35 1 -0.1036 -3.4459 -7.8559 36 1 -0.5755 -2.2532 -6.6221 37 1 3.0971 -4.4101 -6.2175 38 1 2.0416 -4.7058 -7.6195 39 1 2.9288 -3.1687 -7.4818 40 1 -0.3393 -3.9958 -4.8474 41 1 0.1334 -5.1887 -6.0813 42 1 1.1886 -4.8932 -4.6790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191324586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:55 Heat of formation + Delta-G solvation = 81.686641 kcal Electronic energy + Delta-G solvation = -20819.999350 eV Core-core repulsion = 17836.849283 eV Total energy + Delta-G solvation = -2983.150068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.23053 -38.94606 -38.13352 -34.96041 -32.94696 -32.46929 -30.92804 -29.04432 -28.39957 -28.04615 -26.56851 -25.08806 -24.50290 -22.39545 -21.31010 -20.44389 -18.36219 -17.85563 -17.41529 -16.98376 -16.00316 -15.75256 -15.62956 -15.43003 -15.03201 -14.83729 -14.31278 -14.12337 -13.72995 -13.33337 -13.30109 -13.17874 -12.93379 -12.90932 -12.78498 -12.76095 -12.61479 -12.39644 -12.30763 -12.06983 -12.03982 -11.96658 -11.70173 -11.64934 -10.91205 -10.86048 -10.50102 -10.09569 -8.96892 -8.08628 -6.19886 0.72824 1.43880 1.45483 1.46176 1.52754 1.55968 2.45001 3.19510 3.28737 3.46080 3.65231 3.68445 3.79945 3.96901 4.17541 4.45857 4.52260 4.59112 4.59800 4.67747 4.69104 4.70778 4.73919 4.78533 4.81008 4.89463 5.01112 5.06219 5.08381 5.08897 5.21226 5.22599 5.25281 5.32983 5.55247 5.74760 5.81471 5.84213 6.29061 6.37562 6.71232 6.92995 7.48624 7.60192 8.97121 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.032986 B = 0.004080 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.650993 B = 6861.286058 C = 6883.676794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.037 1.037 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.533 5.533 13 C 0.051 3.949 14 C 0.137 3.863 15 C -0.022 4.022 16 C -0.023 4.023 17 N -0.275 5.275 18 C 0.152 3.848 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.158 4.158 22 N -0.111 5.111 23 N -0.306 5.306 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.262 0.738 28 H 0.002 0.998 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.217 0.783 34 H 0.053 0.947 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 -10.447 -19.472 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H -0.019 1.019 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.257 5.257 13 C -0.097 4.097 14 C 0.007 3.993 15 C -0.160 4.160 16 C -0.175 4.175 17 N -0.071 5.071 18 C 0.071 3.929 19 C -0.212 4.212 20 C -0.204 4.204 21 C -0.215 4.215 22 N -0.089 5.089 23 N -0.173 5.173 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.123 0.877 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.988 -10.788 -20.076 23.137 hybrid contribution -0.064 0.798 1.634 1.819 sum -4.052 -9.990 -18.443 21.362 Atomic orbital electron populations 1.21664 0.96384 0.99691 1.00112 1.19108 0.93309 0.90129 0.86633 1.01932 1.21366 1.31210 1.12295 0.91007 0.92622 1.25654 0.95356 0.95750 1.01672 1.70003 1.37668 1.24004 1.24110 0.85618 0.78539 0.78806 0.78687 1.20128 1.20773 1.19588 1.62105 1.09840 1.52136 1.01653 1.22055 0.88357 0.98419 1.00897 1.20306 1.01465 0.92147 0.85359 1.21908 0.91511 1.02572 1.00052 1.23562 1.02367 0.99158 0.92377 1.48009 1.08969 1.28243 1.21836 1.21647 0.96676 0.85983 0.88597 1.22257 0.98064 1.02353 0.98496 1.22013 0.96051 1.01817 1.00513 1.22289 1.00505 0.97493 1.01262 1.78082 1.03387 1.08675 1.18781 1.74993 1.23286 1.14855 1.04156 0.94436 0.92057 0.94365 0.92885 0.97907 0.92226 0.92572 0.95624 0.87705 0.76659 0.92767 0.86626 0.90990 0.92974 0.86885 0.92070 0.90507 0.86511 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.76 71.98 0.63 -5.10 16 2 C 0.21 11.16 2.06 44.17 0.09 11.25 16 3 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 4 C -0.52 -29.19 7.88 25.60 0.20 -28.99 16 5 H 0.06 3.14 6.41 -2.91 -0.02 3.12 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.53 -24.19 4.61 -906.01 -4.18 -28.37 16 13 C 0.05 2.34 9.08 127.69 1.16 3.50 16 14 C 0.14 5.30 5.34 85.56 0.46 5.76 16 15 C -0.02 -0.76 5.95 41.60 0.25 -0.52 16 16 C -0.02 -0.62 10.63 83.49 0.89 0.27 16 17 N -0.27 -7.02 3.18 -307.52 -0.98 -8.00 16 18 C 0.15 2.34 1.23 3.60 0.00 2.34 16 19 C -0.15 -1.64 8.72 71.98 0.63 -1.02 16 20 C -0.15 -2.10 8.05 71.98 0.58 -1.52 16 21 C -0.16 -1.81 8.29 71.98 0.60 -1.22 16 22 N -0.11 -3.69 12.18 37.02 0.45 -3.24 16 23 N -0.31 -11.77 11.46 -48.60 -0.56 -12.32 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 26 H 0.04 1.55 6.20 -2.39 -0.01 1.53 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.06 2.82 6.10 -2.38 -0.01 2.81 16 30 H 0.06 2.44 6.56 -2.39 -0.02 2.43 16 31 H 0.03 1.05 8.12 -2.39 -0.02 1.04 16 32 H 0.10 3.65 5.83 -2.39 -0.01 3.64 16 33 H 0.22 4.28 7.59 -2.91 -0.02 4.25 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 40 H 0.08 0.83 7.39 -2.39 -0.02 0.81 16 41 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -69.47 332.94 3.92 -65.54 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.99 Total: 6.88 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.93 Total: -13.99 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -5.02 Total: -104.62 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -69.47 3.92 -65.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191324586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.230 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds