Wall clock time and date at job start Mon Mar 30 2020 00:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 N 1.46501 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99799 * 272.11925 * 4 3 2 6 6 H 1.08002 * 119.99876 * 319.90968 * 5 4 3 7 7 C 1.38813 * 120.00172 * 139.91271 * 5 4 3 8 8 N 1.31617 * 119.99770 * 161.28352 * 7 5 4 9 9 Si 1.86797 * 119.99917 * 341.28685 * 7 5 4 10 10 H 1.48502 * 109.46960 * 95.70096 * 9 7 5 11 11 H 1.48503 * 109.46861 * 215.69937 * 9 7 5 12 12 H 1.48495 * 109.47078 * 335.70283 * 9 7 5 13 13 C 1.46499 * 120.00263 * 92.11275 * 4 3 2 14 14 C 1.50701 * 109.46718 * 84.49771 * 13 4 3 15 15 N 1.30518 * 126.34450 * 82.99229 * 14 13 4 16 16 N 1.28594 * 109.67492 * 180.02562 * 15 14 13 17 17 C 1.30522 * 109.67110 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34920 * 179.97438 * 17 16 15 19 19 C 1.53009 * 109.46438 * 60.03051 * 18 17 16 20 20 C 1.52996 * 109.47388 * 300.03547 * 18 17 16 21 21 N 1.35489 * 126.34762 * 263.25868 * 14 13 4 22 22 C 1.46500 * 126.98288 * 359.97438 * 21 14 13 23 23 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47033 * 299.99696 * 1 2 3 25 25 H 1.08995 * 109.47332 * 59.99713 * 1 2 3 26 26 H 1.09002 * 109.46783 * 240.00311 * 2 1 3 27 27 H 1.08995 * 109.47332 * 120.00287 * 2 1 3 28 28 H 1.09002 * 109.47242 * 60.00591 * 3 2 1 29 29 H 1.08995 * 109.47456 * 300.00211 * 3 2 1 30 30 H 0.97010 * 119.99809 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47113 * 324.50376 * 13 4 3 32 32 H 1.09001 * 109.47240 * 204.49706 * 13 4 3 33 33 H 1.08999 * 109.47407 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.46408 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47005 * 60.00175 * 19 18 17 36 36 H 1.08994 * 109.47302 * 299.99537 * 19 18 17 37 37 H 1.08993 * 109.47485 * 179.97438 * 20 18 17 38 38 H 1.09007 * 109.46778 * 299.99477 * 20 18 17 39 39 H 1.08999 * 109.47282 * 59.99390 * 20 18 17 40 40 H 1.09001 * 109.47339 * 270.36976 * 22 21 14 41 41 H 1.09003 * 109.47010 * 30.36590 * 22 21 14 42 42 H 1.08995 * 109.47372 * 150.36567 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3986 1.1842 6 1 3.8407 1.9699 2.0316 7 6 5.3338 0.6199 1.2962 8 7 6.1900 0.8444 2.2702 9 14 5.6575 -0.7466 0.0644 10 1 6.5517 -0.2436 -1.0092 11 1 6.3065 -1.8907 0.7537 12 1 4.3717 -1.1917 -0.5304 13 6 4.2370 1.4896 -1.2687 14 6 4.3699 2.9216 -1.7192 15 7 5.2738 3.7761 -1.3238 16 7 5.0888 4.9049 -1.9115 17 6 4.0588 4.8216 -2.7088 18 6 3.5107 5.9239 -3.5780 19 6 4.5889 6.3804 -4.5631 20 6 3.0894 7.1040 -2.7001 21 7 3.5701 3.5620 -2.6057 22 6 2.4139 3.0049 -3.3121 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 6.9894 0.3004 2.3483 31 1 3.6938 0.9204 -2.0231 32 1 5.2286 1.0582 -1.1321 33 1 2.6464 5.5553 -4.1306 34 1 4.1922 7.1774 -5.1921 35 1 4.8890 5.5397 -5.1885 36 1 5.4531 6.7491 -4.0106 37 1 2.6934 7.9014 -3.3288 38 1 2.3213 6.7788 -1.9984 39 1 3.9537 7.4726 -2.1477 40 1 2.7414 2.5626 -4.2529 41 1 1.9452 2.2389 -2.6942 42 1 1.6948 3.7986 -3.5145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195101405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:53 Heat of formation + Delta-G solvation = 86.818666 kcal Electronic energy + Delta-G solvation = -21351.038685 eV Core-core repulsion = 18368.111158 eV Total energy + Delta-G solvation = -2982.927527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.53184 -36.70952 -35.60836 -34.43193 -33.04063 -31.49455 -29.59910 -27.40902 -27.20057 -26.34597 -25.72833 -23.12535 -22.31559 -20.93233 -19.83931 -19.48665 -17.16900 -16.51174 -15.98028 -15.34717 -14.96766 -14.63723 -14.32927 -14.16997 -13.68517 -13.41920 -13.17844 -12.92455 -12.72193 -12.58193 -12.45867 -12.17028 -11.84391 -11.62566 -11.34175 -11.23964 -11.07211 -10.88768 -10.87377 -10.76244 -10.53666 -10.17448 -10.01194 -9.66892 -9.61990 -9.56337 -8.58325 -8.38647 -6.98803 -5.97780 -3.47355 2.32987 2.89816 3.29180 3.41862 3.45306 3.56148 4.45381 4.49170 4.68577 4.77555 4.90173 5.04154 5.10705 5.13215 5.21411 5.32454 5.34593 5.51435 5.54222 5.57891 5.60811 5.69316 5.81465 5.83168 5.86565 5.96967 6.11055 6.18619 6.20963 6.28351 6.37234 6.40768 6.44021 6.52667 6.76251 6.80747 6.95685 7.40210 8.00760 8.38312 8.88290 9.47646 9.66194 10.00109 11.17087 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.006905 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.823354 B = 4054.169617 C = 4887.110829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.151 3.849 4 N -0.586 5.586 5 C -0.270 4.270 6 H 0.079 0.921 7 C 0.047 3.953 8 N -0.889 5.889 9 Si 0.869 3.131 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.264 1.264 13 C 0.212 3.788 14 C 0.181 3.819 15 N -0.277 5.277 16 N -0.294 5.294 17 C 0.149 3.851 18 C 0.001 3.999 19 C -0.139 4.139 20 C -0.140 4.140 21 N -0.479 5.479 22 C 0.072 3.928 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 4.616 -14.661 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.026 3.974 4 N -0.306 5.306 5 C -0.399 4.399 6 H 0.096 0.904 7 C -0.155 4.155 8 N -0.529 5.529 9 Si 0.699 3.301 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.188 1.188 13 C 0.082 3.918 14 C -0.088 4.088 15 N -0.116 5.116 16 N -0.134 5.134 17 C -0.118 4.118 18 C -0.020 4.020 19 C -0.197 4.197 20 C -0.198 4.198 21 N -0.172 5.172 22 C -0.072 4.072 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.986 5.111 -13.768 17.760 hybrid contribution -0.849 -1.353 -1.275 2.044 sum -10.834 3.758 -15.043 18.916 Atomic orbital electron populations 1.21728 0.97042 1.00715 1.00973 1.22115 0.93853 1.00242 1.02304 1.21009 0.83664 0.93869 0.98904 1.44123 1.00531 1.84332 1.01662 1.18668 1.08310 1.23558 0.89347 0.90390 1.25460 0.96640 0.97291 0.96094 1.69834 1.10460 1.39251 1.33341 0.87018 0.78320 0.83358 0.81431 1.21049 1.22439 1.18839 1.19947 0.99019 0.84094 0.88709 1.26870 0.89924 1.00911 0.91126 1.74383 1.21314 0.96148 1.19785 1.74179 1.14057 1.17183 1.08013 1.24581 0.97134 0.86659 1.03411 1.19435 0.97711 0.91058 0.93803 1.21778 0.98823 1.00945 0.98166 1.21788 1.02217 0.96415 0.99417 1.46148 1.25355 1.10945 1.34731 1.22044 0.86989 1.00593 0.97585 0.93504 0.92982 0.93662 0.93147 0.91187 0.92865 0.94977 0.92513 0.92733 0.89228 0.90431 0.91960 0.92849 0.91210 0.91966 0.92736 0.91193 0.90601 0.88967 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.15 -2.45 6.26 -26.73 -0.17 -2.62 16 3 C 0.15 2.84 5.69 -4.04 -0.02 2.82 16 4 N -0.59 -13.59 2.03 -174.61 -0.36 -13.95 16 5 C -0.27 -7.55 9.93 -15.06 -0.15 -7.70 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.05 1.37 5.32 -17.43 -0.09 1.27 16 8 N -0.89 -27.56 13.97 55.49 0.78 -26.79 16 9 Si 0.87 21.66 24.90 -169.99 -4.23 17.43 16 10 H -0.28 -7.01 6.74 56.52 0.38 -6.63 16 11 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.21 4.61 4.52 -5.19 -0.02 4.59 16 14 C 0.18 3.91 7.61 -154.99 -1.18 2.73 16 15 N -0.28 -6.91 12.21 32.79 0.40 -6.51 16 16 N -0.29 -6.44 12.21 32.80 0.40 -6.03 16 17 C 0.15 2.57 6.54 -154.98 -1.01 1.56 16 18 C 0.00 0.01 3.27 -91.77 -0.30 -0.29 16 19 C -0.14 -1.50 9.18 37.16 0.34 -1.15 16 20 C -0.14 -1.59 9.18 37.16 0.34 -1.24 16 21 N -0.48 -8.12 3.15 -118.00 -0.37 -8.49 16 22 C 0.07 0.80 10.52 59.85 0.63 1.42 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 29 H 0.03 0.52 5.97 -51.93 -0.31 0.21 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 31 H 0.05 0.99 7.52 -51.93 -0.39 0.60 16 32 H 0.09 2.20 3.64 -51.93 -0.19 2.01 16 33 H 0.08 0.73 6.89 -51.93 -0.36 0.38 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.02 5.57 -51.93 -0.29 0.73 16 42 H 0.08 0.71 7.17 -51.93 -0.37 0.34 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -34.43 336.24 -6.56 -40.99 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.98 Total: -1.58 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.27 Total: -0.15 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.85 Total: -61.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.23 Total: 17.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.43 -6.56 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195101405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.813 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds