Wall clock time and date at job start Mon Mar 30 2020 00:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 N 1.46501 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99799 * 272.11925 * 4 3 2 6 6 H 1.08002 * 119.99876 * 319.90968 * 5 4 3 7 7 C 1.38813 * 120.00172 * 139.91271 * 5 4 3 8 8 N 1.31617 * 119.99770 * 161.28352 * 7 5 4 9 9 Si 1.86797 * 119.99917 * 341.28685 * 7 5 4 10 10 H 1.48502 * 109.46960 * 95.70096 * 9 7 5 11 11 H 1.48503 * 109.46861 * 215.69937 * 9 7 5 12 12 H 1.48495 * 109.47078 * 335.70283 * 9 7 5 13 13 C 1.46499 * 120.00263 * 92.11275 * 4 3 2 14 14 C 1.50701 * 109.46718 * 84.49771 * 13 4 3 15 15 N 1.30518 * 126.34450 * 82.99229 * 14 13 4 16 16 N 1.28594 * 109.67492 * 180.02562 * 15 14 13 17 17 C 1.30522 * 109.67110 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34920 * 179.97438 * 17 16 15 19 19 C 1.53009 * 109.46438 * 60.03051 * 18 17 16 20 20 C 1.52996 * 109.47388 * 300.03547 * 18 17 16 21 21 N 1.35489 * 126.34762 * 263.25868 * 14 13 4 22 22 C 1.46500 * 126.98288 * 359.97438 * 21 14 13 23 23 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47033 * 299.99696 * 1 2 3 25 25 H 1.08995 * 109.47332 * 59.99713 * 1 2 3 26 26 H 1.09002 * 109.46783 * 240.00311 * 2 1 3 27 27 H 1.08995 * 109.47332 * 120.00287 * 2 1 3 28 28 H 1.09002 * 109.47242 * 60.00591 * 3 2 1 29 29 H 1.08995 * 109.47456 * 300.00211 * 3 2 1 30 30 H 0.97010 * 119.99809 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47113 * 324.50376 * 13 4 3 32 32 H 1.09001 * 109.47240 * 204.49706 * 13 4 3 33 33 H 1.08999 * 109.47407 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.46408 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47005 * 60.00175 * 19 18 17 36 36 H 1.08994 * 109.47302 * 299.99537 * 19 18 17 37 37 H 1.08993 * 109.47485 * 179.97438 * 20 18 17 38 38 H 1.09007 * 109.46778 * 299.99477 * 20 18 17 39 39 H 1.08999 * 109.47282 * 59.99390 * 20 18 17 40 40 H 1.09001 * 109.47339 * 270.36976 * 22 21 14 41 41 H 1.09003 * 109.47010 * 30.36590 * 22 21 14 42 42 H 1.08995 * 109.47372 * 150.36567 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3986 1.1842 6 1 3.8407 1.9699 2.0316 7 6 5.3338 0.6199 1.2962 8 7 6.1900 0.8444 2.2702 9 14 5.6575 -0.7466 0.0644 10 1 6.5517 -0.2436 -1.0092 11 1 6.3065 -1.8907 0.7537 12 1 4.3717 -1.1917 -0.5304 13 6 4.2370 1.4896 -1.2687 14 6 4.3699 2.9216 -1.7192 15 7 5.2738 3.7761 -1.3238 16 7 5.0888 4.9049 -1.9115 17 6 4.0588 4.8216 -2.7088 18 6 3.5107 5.9239 -3.5780 19 6 4.5889 6.3804 -4.5631 20 6 3.0894 7.1040 -2.7001 21 7 3.5701 3.5620 -2.6057 22 6 2.4139 3.0049 -3.3121 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 6.9894 0.3004 2.3483 31 1 3.6938 0.9204 -2.0231 32 1 5.2286 1.0582 -1.1321 33 1 2.6464 5.5553 -4.1306 34 1 4.1922 7.1774 -5.1921 35 1 4.8890 5.5397 -5.1885 36 1 5.4531 6.7491 -4.0106 37 1 2.6934 7.9014 -3.3288 38 1 2.3213 6.7788 -1.9984 39 1 3.9537 7.4726 -2.1477 40 1 2.7414 2.5626 -4.2529 41 1 1.9452 2.2389 -2.6942 42 1 1.6948 3.7986 -3.5145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195101405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:53 Heat of formation + Delta-G solvation = 64.245169 kcal Electronic energy + Delta-G solvation = -21352.017545 eV Core-core repulsion = 18368.111158 eV Total energy + Delta-G solvation = -2983.906387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.00082 -38.40693 -36.69368 -35.71943 -34.63709 -33.40851 -31.14741 -28.54119 -28.05975 -27.78442 -27.56747 -24.32865 -23.97837 -22.38761 -21.37711 -20.72785 -19.05323 -17.81702 -17.49222 -17.12916 -16.22705 -16.16528 -15.67433 -15.52624 -15.02941 -14.59867 -14.49154 -14.36094 -14.13510 -13.90040 -13.79172 -13.33398 -13.02219 -12.85729 -12.66053 -12.48089 -12.29258 -12.26663 -12.18450 -12.16509 -12.07569 -11.98159 -11.60106 -11.37621 -11.06134 -10.93569 -10.72220 -9.96898 -8.91649 -8.19925 -5.67667 0.92007 1.29858 1.38093 1.48679 1.67006 1.98511 2.40563 3.04928 3.31046 3.35040 3.61495 3.79055 3.84256 4.06494 4.14951 4.18450 4.30930 4.35232 4.40070 4.49941 4.55056 4.66821 4.72993 4.78255 4.80028 4.88964 4.91801 4.93614 5.04836 5.08158 5.15442 5.27694 5.30145 5.33594 5.42404 5.46497 5.59519 5.91358 6.11339 6.16904 6.89303 7.53410 7.91456 7.95930 8.99631 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.006905 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.823354 B = 4054.169617 C = 4887.110829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.149 3.851 4 N -0.596 5.596 5 C -0.256 4.256 6 H 0.027 0.973 7 C -0.015 4.015 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.229 1.229 13 C 0.214 3.786 14 C 0.168 3.832 15 N -0.345 5.345 16 N -0.346 5.346 17 C 0.172 3.828 18 C 0.001 3.999 19 C -0.135 4.135 20 C -0.138 4.138 21 N -0.471 5.471 22 C 0.056 3.944 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 4.343 -19.080 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.025 3.975 4 N -0.318 5.318 5 C -0.387 4.387 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.591 5.591 9 Si 0.767 3.233 10 H -0.210 1.210 11 H -0.232 1.232 12 H -0.151 1.151 13 C 0.085 3.915 14 C -0.104 4.104 15 N -0.184 5.184 16 N -0.185 5.185 17 C -0.097 4.097 18 C -0.020 4.020 19 C -0.193 4.193 20 C -0.196 4.196 21 N -0.162 5.162 22 C -0.085 4.085 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.512 4.837 -18.234 23.204 hybrid contribution 0.123 -1.062 0.042 1.070 sum -13.389 3.775 -18.192 22.901 Atomic orbital electron populations 1.21658 0.93723 1.02103 1.02152 1.21994 0.96699 0.97940 1.01193 1.21167 0.80975 0.95712 0.99671 1.44165 1.02182 1.84833 1.00616 1.18414 1.08263 1.21845 0.90127 0.95571 1.26189 0.96495 0.99939 0.98590 1.70003 1.11514 1.40986 1.36638 0.85892 0.79468 0.79234 0.78714 1.21017 1.23229 1.15138 1.19889 0.97939 0.84811 0.88870 1.26494 0.90799 1.00557 0.92577 1.74245 1.24110 0.97917 1.22167 1.74047 1.17201 1.16869 1.10378 1.25592 0.95099 0.87609 1.01416 1.19833 0.99250 0.89485 0.93412 1.21765 0.97687 1.01997 0.97884 1.21783 1.00908 0.97221 0.99655 1.46339 1.25886 1.10362 1.33648 1.22597 0.85604 1.02096 0.98181 0.92046 0.93309 0.91022 0.92118 0.94425 0.94887 0.91421 0.92844 0.88071 0.92318 0.86213 0.88318 0.92902 0.93856 0.88155 0.93514 0.93972 0.87667 0.88519 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.91 71.98 0.71 -2.37 16 2 C -0.14 -4.31 6.26 30.60 0.19 -4.12 16 3 C 0.15 5.36 5.69 86.38 0.49 5.85 16 4 N -0.60 -27.61 2.03 -706.34 -1.44 -29.04 16 5 C -0.26 -15.05 9.93 84.03 0.83 -14.22 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C -0.02 -0.92 5.32 84.86 0.45 -0.47 16 8 N -0.95 -62.49 13.97 21.65 0.30 -62.18 16 9 Si 0.94 45.99 24.90 68.60 1.71 47.70 16 10 H -0.28 -13.70 6.74 99.48 0.67 -13.03 16 11 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 12 H -0.23 -9.74 7.11 99.48 0.71 -9.03 16 13 C 0.21 9.02 4.52 85.63 0.39 9.41 16 14 C 0.17 7.12 7.61 137.98 1.05 8.17 16 15 N -0.35 -17.77 12.21 -50.16 -0.61 -18.39 16 16 N -0.35 -15.45 12.21 -50.15 -0.61 -16.06 16 17 C 0.17 5.61 6.54 137.98 0.90 6.51 16 18 C 0.00 0.02 3.27 -11.54 -0.04 -0.02 16 19 C -0.14 -2.48 9.18 71.99 0.66 -1.82 16 20 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 21 N -0.47 -14.60 3.15 -527.25 -1.66 -16.26 16 22 C 0.06 0.92 10.52 127.77 1.34 2.27 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 29 H 0.07 1.94 5.97 -2.39 -0.01 1.93 16 30 H 0.26 16.38 8.31 -92.70 -0.77 15.60 16 31 H 0.10 3.26 7.52 -2.39 -0.02 3.24 16 32 H 0.06 2.86 3.64 -2.39 -0.01 2.85 16 33 H 0.12 1.47 6.89 -2.39 -0.02 1.46 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.55 5.57 -2.39 -0.01 1.54 16 42 H 0.12 1.17 7.17 -2.39 -0.02 1.16 16 Total: -1.00 -84.85 336.24 6.29 -78.57 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.95 Total: 8.53 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 7.65 Total: 7.14 kcal Atomic # 7 Polarization: -137.91 SS G_CDS: -4.02 Total: -141.93 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.71 Total: 47.70 kcal Total: -84.85 6.29 -78.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195101405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.812 kcal (2) G-P(sol) polarization free energy of solvation -84.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds