Wall clock time and date at job start Mon Mar 30 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47210 * 2 1 4 4 H 1.08997 * 109.47891 * 54.99330 * 3 2 1 5 5 C 1.50699 * 109.47059 * 175.00022 * 3 2 1 6 6 H 1.08004 * 120.00651 * 120.00008 * 5 3 2 7 7 C 1.37879 * 119.99833 * 299.99559 * 5 3 2 8 8 N 1.31518 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00015 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46991 * 120.00069 * 9 7 5 12 12 H 1.48503 * 109.46876 * 239.99484 * 9 7 5 13 13 N 1.46906 * 109.46815 * 294.99444 * 3 2 1 14 14 C 1.48530 * 110.99956 * 292.39583 * 13 3 2 15 15 C 1.54939 * 103.22779 * 200.27791 * 14 13 3 16 16 C 1.54599 * 102.91985 * 37.41726 * 15 14 13 17 17 H 1.09004 * 110.38878 * 96.99643 * 16 15 14 18 18 N 1.46897 * 110.30966 * 219.12680 * 16 15 14 19 19 C 1.46854 * 110.99665 * 295.71762 * 18 16 15 20 20 C 1.53037 * 109.51886 * 185.84309 * 19 18 16 21 21 C 1.53126 * 109.27801 * 300.81620 * 20 19 18 22 22 C 1.53124 * 109.15878 * 57.65645 * 21 20 19 23 23 C 1.46844 * 111.00090 * 59.92438 * 18 16 15 24 24 C 1.47903 * 110.99951 * 175.00476 * 13 3 2 25 25 H 1.09001 * 109.46733 * 60.00093 * 1 2 3 26 26 H 1.08999 * 109.47461 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47435 * 300.00789 * 1 2 3 28 28 H 1.08994 * 109.47620 * 239.99228 * 2 1 3 29 29 H 1.09007 * 109.46552 * 119.99218 * 2 1 3 30 30 H 0.96999 * 120.00148 * 180.02562 * 8 7 5 31 31 H 1.08994 * 110.67168 * 318.71547 * 14 13 3 32 32 H 1.09004 * 110.66632 * 81.67893 * 14 13 3 33 33 H 1.08996 * 110.72205 * 279.05943 * 15 14 13 34 34 H 1.08997 * 110.72192 * 155.77225 * 15 14 13 35 35 H 1.08994 * 109.46310 * 65.82535 * 19 18 16 36 36 H 1.09004 * 109.45830 * 305.85222 * 19 18 16 37 37 H 1.09000 * 109.50480 * 180.88135 * 20 19 18 38 38 H 1.09002 * 109.53848 * 60.77851 * 20 19 18 39 39 H 1.08998 * 109.52297 * 177.56592 * 21 20 19 40 40 H 1.08999 * 109.51925 * 297.75795 * 21 20 19 41 41 H 1.08999 * 109.50059 * 62.28737 * 22 21 20 42 42 H 1.08993 * 109.49981 * 182.40384 * 22 21 20 43 43 H 1.09002 * 109.46133 * 294.17882 * 23 18 16 44 44 H 1.09002 * 109.46211 * 54.14407 * 23 18 16 45 45 H 1.09002 * 109.91519 * 26.48725 * 24 13 3 46 46 H 1.09006 * 110.07820 * 265.28906 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4060 0.3375 2.1734 9 14 6.0049 0.8812 1.3819 10 1 6.5988 1.5460 0.1944 11 1 6.3989 1.6167 2.6103 12 1 6.4969 -0.5176 1.4633 13 7 1.6514 2.0992 -1.2554 14 6 2.3700 1.5049 -2.4115 15 6 2.2642 2.6045 -3.4979 16 6 2.4101 3.9104 -2.6833 17 1 3.4398 4.2663 -2.7175 18 7 1.4984 4.9391 -3.2015 19 6 1.8537 5.3128 -4.5765 20 6 0.9793 6.4839 -5.0303 21 6 -0.4939 6.0726 -4.9579 22 6 -0.8256 5.6420 -3.5264 23 6 0.1012 4.4954 -3.1161 24 6 2.0235 3.5306 -1.2420 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 3.8290 -0.0602 2.9504 31 1 3.4127 1.3127 -2.1589 32 1 1.8797 0.5883 -2.7393 33 1 1.2941 2.5652 -3.9933 34 1 3.0728 2.5097 -4.2226 35 1 1.6922 4.4614 -5.2376 36 1 2.9026 5.6071 -4.6133 37 1 1.2325 6.7509 -6.0564 38 1 1.1505 7.3406 -4.3785 39 1 -1.1222 6.9178 -5.2389 40 1 -0.6738 5.2412 -5.6393 41 1 -0.6827 6.4850 -2.8504 42 1 -1.8618 5.3075 -3.4779 43 1 -0.0521 3.6477 -3.7841 44 1 -0.1228 4.1959 -2.0923 45 1 2.8722 3.6874 -0.5762 46 1 1.1773 4.1341 -0.9132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220554397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:39 Heat of formation + Delta-G solvation = 0.191619 kcal Electronic energy + Delta-G solvation = -21987.467412 eV Core-core repulsion = 19104.323798 eV Total energy + Delta-G solvation = -2883.143614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67268 -37.42967 -34.47052 -32.35502 -31.29717 -30.73187 -29.12922 -27.52358 -26.01148 -23.77227 -22.96198 -22.78086 -21.24996 -20.02832 -19.03264 -18.72126 -16.57751 -15.95166 -15.43913 -14.77918 -14.46057 -14.21466 -14.13199 -13.76117 -13.35536 -13.06634 -12.89593 -12.65120 -12.26456 -12.03601 -12.01835 -11.51739 -11.36084 -11.17738 -10.99539 -10.88454 -10.82033 -10.66648 -10.56755 -10.40883 -10.35692 -10.09196 -10.02734 -9.88521 -9.59362 -9.43762 -9.05102 -8.35964 -7.94408 -7.15239 -5.99033 -4.11684 3.25250 3.34223 3.36853 4.13587 4.39217 4.86144 4.91955 4.97561 5.11888 5.24667 5.30500 5.36443 5.44239 5.56646 5.61136 5.65224 5.76647 5.80506 5.90911 5.96816 6.03159 6.06786 6.17156 6.23074 6.29391 6.34642 6.36386 6.46370 6.48907 6.59809 6.63031 6.70991 6.86269 6.90836 7.09913 7.19199 7.34398 7.40578 7.48260 7.60946 7.75650 7.98444 8.15966 8.26945 8.45365 8.98819 9.55164 11.00477 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.005383 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.235850 B = 5200.197517 C = 5816.229381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.205 3.795 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.514 5.514 14 C 0.042 3.958 15 C -0.157 4.157 16 C 0.078 3.922 17 H 0.079 0.921 18 N -0.528 5.528 19 C 0.055 3.945 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.117 4.117 23 C 0.052 3.948 24 C 0.045 3.955 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 7.977 -12.015 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.098 3.902 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.238 5.238 14 C -0.086 4.086 15 C -0.197 4.197 16 C -0.031 4.031 17 H 0.097 0.903 18 N -0.252 5.252 19 C -0.073 4.073 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.076 4.076 24 C -0.083 4.083 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.938 8.244 -11.567 15.395 hybrid contribution 1.965 -0.758 -0.241 2.120 sum -3.973 7.486 -11.808 14.535 Atomic orbital electron populations 1.21706 0.98925 0.98339 1.00525 1.21534 0.92176 0.99138 1.01800 1.19390 0.93107 0.91318 0.86413 0.94460 1.21752 0.92803 1.38019 1.05416 0.92317 1.24909 0.97729 0.95068 0.95694 1.69888 1.34664 1.38334 1.09378 0.86646 0.86310 0.77688 0.77997 1.19955 1.21012 1.21051 1.65127 1.52731 1.01032 1.04922 1.23037 0.99163 0.95953 0.90458 1.23159 1.00864 0.97244 0.98439 1.22620 0.95858 0.89156 0.95491 0.90261 1.62157 1.02847 1.40156 1.19991 1.22011 0.99162 0.96781 0.89326 1.21573 0.94856 0.98480 1.00404 1.21576 0.96373 1.00534 0.97318 1.21606 0.98484 0.99106 0.96296 1.22132 0.87552 0.95393 1.02495 1.22777 1.00345 0.91386 0.93832 0.93438 0.95692 0.94250 0.95162 0.89073 0.92971 0.91950 0.91964 0.91502 0.92557 0.95093 0.91326 0.92148 0.91300 0.92332 0.92577 0.91400 0.91948 0.94723 0.89312 0.92206 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.55 5.22 -26.73 -0.14 -2.69 16 3 C 0.20 4.97 1.72 -68.86 -0.12 4.85 16 4 H 0.04 1.02 8.13 -51.93 -0.42 0.60 16 5 C -0.54 -14.14 6.43 -34.44 -0.22 -14.36 16 6 H 0.06 1.54 5.99 -52.48 -0.31 1.23 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.67 11.29 55.43 0.63 -24.04 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.51 -10.64 4.72 -223.88 -1.06 -11.69 16 14 C 0.04 0.82 5.47 -1.90 -0.01 0.81 16 15 C -0.16 -2.54 5.46 -24.87 -0.14 -2.67 16 16 C 0.08 1.27 3.13 -66.36 -0.21 1.06 16 17 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 18 N -0.53 -7.62 4.66 -225.07 -1.05 -8.67 16 19 C 0.06 0.68 5.14 -3.83 -0.02 0.66 16 20 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 21 C -0.12 -1.23 6.00 -26.60 -0.16 -1.39 16 22 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 23 C 0.05 0.72 4.76 -3.84 -0.02 0.71 16 24 C 0.05 0.87 5.42 -2.76 -0.01 0.86 16 25 H 0.05 0.94 7.75 -51.93 -0.40 0.53 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.03 0.70 6.94 -51.93 -0.36 0.34 16 29 H 0.09 2.41 5.95 -51.92 -0.31 2.10 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.06 1.35 5.70 -51.93 -0.30 1.05 16 32 H 0.06 1.20 7.59 -51.93 -0.39 0.80 16 33 H 0.07 1.06 5.70 -51.93 -0.30 0.76 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.39 7.36 -51.93 -0.38 0.01 16 36 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.51 6.21 -51.93 -0.32 0.19 16 44 H 0.09 1.40 5.96 -51.93 -0.31 1.09 16 45 H 0.06 1.30 6.66 -51.93 -0.35 0.96 16 46 H 0.07 1.34 6.21 -51.93 -0.32 1.02 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -26.34 331.56 -10.87 -37.20 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.26 Total: 2.06 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.10 Total: -15.77 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -1.48 Total: -44.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.34 -10.87 -37.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220554397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.396 kcal (2) G-P(sol) polarization free energy of solvation -26.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds