Wall clock time and date at job start Mon Mar 30 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47210 * 2 1 4 4 H 1.08997 * 109.47891 * 54.99330 * 3 2 1 5 5 C 1.50699 * 109.47059 * 175.00022 * 3 2 1 6 6 H 1.08004 * 120.00651 * 120.00008 * 5 3 2 7 7 C 1.37879 * 119.99833 * 299.99559 * 5 3 2 8 8 N 1.31518 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00015 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46991 * 120.00069 * 9 7 5 12 12 H 1.48503 * 109.46876 * 239.99484 * 9 7 5 13 13 N 1.46906 * 109.46815 * 294.99444 * 3 2 1 14 14 C 1.48530 * 110.99956 * 292.39583 * 13 3 2 15 15 C 1.54939 * 103.22779 * 200.27791 * 14 13 3 16 16 C 1.54599 * 102.91985 * 37.41726 * 15 14 13 17 17 H 1.09004 * 110.38878 * 96.99643 * 16 15 14 18 18 N 1.46897 * 110.30966 * 219.12680 * 16 15 14 19 19 C 1.46854 * 110.99665 * 295.71762 * 18 16 15 20 20 C 1.53037 * 109.51886 * 185.84309 * 19 18 16 21 21 C 1.53126 * 109.27801 * 300.81620 * 20 19 18 22 22 C 1.53124 * 109.15878 * 57.65645 * 21 20 19 23 23 C 1.46844 * 111.00090 * 59.92438 * 18 16 15 24 24 C 1.47903 * 110.99951 * 175.00476 * 13 3 2 25 25 H 1.09001 * 109.46733 * 60.00093 * 1 2 3 26 26 H 1.08999 * 109.47461 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47435 * 300.00789 * 1 2 3 28 28 H 1.08994 * 109.47620 * 239.99228 * 2 1 3 29 29 H 1.09007 * 109.46552 * 119.99218 * 2 1 3 30 30 H 0.96999 * 120.00148 * 180.02562 * 8 7 5 31 31 H 1.08994 * 110.67168 * 318.71547 * 14 13 3 32 32 H 1.09004 * 110.66632 * 81.67893 * 14 13 3 33 33 H 1.08996 * 110.72205 * 279.05943 * 15 14 13 34 34 H 1.08997 * 110.72192 * 155.77225 * 15 14 13 35 35 H 1.08994 * 109.46310 * 65.82535 * 19 18 16 36 36 H 1.09004 * 109.45830 * 305.85222 * 19 18 16 37 37 H 1.09000 * 109.50480 * 180.88135 * 20 19 18 38 38 H 1.09002 * 109.53848 * 60.77851 * 20 19 18 39 39 H 1.08998 * 109.52297 * 177.56592 * 21 20 19 40 40 H 1.08999 * 109.51925 * 297.75795 * 21 20 19 41 41 H 1.08999 * 109.50059 * 62.28737 * 22 21 20 42 42 H 1.08993 * 109.49981 * 182.40384 * 22 21 20 43 43 H 1.09002 * 109.46133 * 294.17882 * 23 18 16 44 44 H 1.09002 * 109.46211 * 54.14407 * 23 18 16 45 45 H 1.09002 * 109.91519 * 26.48725 * 24 13 3 46 46 H 1.09006 * 110.07820 * 265.28906 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4060 0.3375 2.1734 9 14 6.0049 0.8812 1.3819 10 1 6.5988 1.5460 0.1944 11 1 6.3989 1.6167 2.6103 12 1 6.4969 -0.5176 1.4633 13 7 1.6514 2.0992 -1.2554 14 6 2.3700 1.5049 -2.4115 15 6 2.2642 2.6045 -3.4979 16 6 2.4101 3.9104 -2.6833 17 1 3.4398 4.2663 -2.7175 18 7 1.4984 4.9391 -3.2015 19 6 1.8537 5.3128 -4.5765 20 6 0.9793 6.4839 -5.0303 21 6 -0.4939 6.0726 -4.9579 22 6 -0.8256 5.6420 -3.5264 23 6 0.1012 4.4954 -3.1161 24 6 2.0235 3.5306 -1.2420 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 3.8290 -0.0602 2.9504 31 1 3.4127 1.3127 -2.1589 32 1 1.8797 0.5883 -2.7393 33 1 1.2941 2.5652 -3.9933 34 1 3.0728 2.5097 -4.2226 35 1 1.6922 4.4614 -5.2376 36 1 2.9026 5.6071 -4.6133 37 1 1.2325 6.7509 -6.0564 38 1 1.1505 7.3406 -4.3785 39 1 -1.1222 6.9178 -5.2389 40 1 -0.6738 5.2412 -5.6393 41 1 -0.6827 6.4850 -2.8504 42 1 -1.8618 5.3075 -3.4779 43 1 -0.0521 3.6477 -3.7841 44 1 -0.1228 4.1959 -2.0923 45 1 2.8722 3.6874 -0.5762 46 1 1.1773 4.1341 -0.9132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220554397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:39 Heat of formation + Delta-G solvation = -15.272799 kcal Electronic energy + Delta-G solvation = -21988.138000 eV Core-core repulsion = 19104.323798 eV Total energy + Delta-G solvation = -2883.814201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98931 -38.84150 -36.03375 -33.99796 -32.98223 -31.71081 -30.68560 -29.03544 -27.83648 -25.18520 -24.39414 -23.91604 -22.83433 -21.23890 -20.84188 -19.93003 -18.41189 -17.31866 -17.19203 -16.20586 -15.83160 -15.58442 -15.29211 -15.05918 -14.74031 -14.50956 -14.29773 -14.11343 -13.92802 -13.53604 -13.24692 -13.07553 -12.89140 -12.74877 -12.66556 -12.41011 -12.30154 -12.05958 -11.99005 -11.88896 -11.65899 -11.51767 -11.45650 -11.32207 -11.14213 -11.06430 -10.94899 -10.43200 -9.10567 -8.96714 -8.03457 -6.24422 1.35531 1.38855 1.47917 2.39885 2.98735 3.16246 3.54224 3.81018 3.90744 3.98560 4.09355 4.16162 4.28999 4.44354 4.52036 4.56255 4.58764 4.67301 4.70705 4.73452 4.80906 4.89040 4.89930 4.93552 5.02436 5.04391 5.10023 5.13367 5.16821 5.19967 5.25089 5.29497 5.33250 5.41361 5.43260 5.50178 5.55711 5.62939 5.78156 6.04885 6.16829 6.23942 6.31825 6.40326 6.54484 6.96687 7.45396 8.92746 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.005383 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.235850 B = 5200.197517 C = 5816.229381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.212 3.788 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.510 5.510 14 C 0.042 3.958 15 C -0.141 4.141 16 C 0.087 3.913 17 H 0.079 0.921 18 N -0.532 5.532 19 C 0.053 3.947 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.114 4.114 23 C 0.055 3.945 24 C 0.049 3.951 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.261 0.739 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 8.820 -14.306 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.104 3.896 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.234 5.234 14 C -0.086 4.086 15 C -0.181 4.181 16 C -0.023 4.023 17 H 0.097 0.903 18 N -0.256 5.256 19 C -0.075 4.075 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.073 4.073 24 C -0.079 4.079 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.184 9.098 -13.877 17.708 hybrid contribution 2.009 -0.992 0.473 2.290 sum -4.175 8.106 -13.404 16.211 Atomic orbital electron populations 1.21563 0.96387 0.99743 1.00559 1.21377 0.94408 0.98133 1.00196 1.19144 0.92009 0.91573 0.86841 0.98275 1.21971 0.93866 1.37409 1.05201 0.92794 1.25605 1.01673 0.95024 0.95572 1.70014 1.36162 1.39131 1.09809 0.85706 0.81595 0.77656 0.77872 1.19530 1.20881 1.20682 1.65050 1.52700 1.01685 1.03923 1.23021 0.97433 0.97269 0.90889 1.23051 1.02111 0.95322 0.97576 1.22422 0.96286 0.90044 0.93514 0.90320 1.62151 1.02684 1.39054 1.21749 1.22121 0.99934 0.97642 0.87759 1.21568 0.94591 0.97319 1.01438 1.21570 0.96486 1.01310 0.96122 1.21585 0.98404 0.97872 0.97273 1.22088 0.87784 0.96401 1.01010 1.22703 0.99009 0.90609 0.95620 0.92556 0.93579 0.94956 0.95232 0.92024 0.93009 0.94315 0.91717 0.90587 0.90636 0.94847 0.90987 0.90054 0.91732 0.90579 0.92259 0.91889 0.90875 0.95104 0.91695 0.95344 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.80 71.98 0.71 -4.39 16 2 C -0.10 -4.94 5.22 30.59 0.16 -4.78 16 3 C 0.21 10.65 1.72 44.17 0.08 10.73 16 4 H 0.00 -0.04 8.13 -2.39 -0.02 -0.06 16 5 C -0.55 -29.31 6.43 25.60 0.16 -29.15 16 6 H 0.05 2.90 5.99 -2.91 -0.02 2.88 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -52.27 11.29 21.45 0.24 -52.03 16 9 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.51 -21.44 4.72 -862.24 -4.07 -25.51 16 14 C 0.04 1.62 5.47 86.65 0.47 2.10 16 15 C -0.14 -4.31 5.46 31.80 0.17 -4.13 16 16 C 0.09 2.77 3.13 45.79 0.14 2.91 16 17 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 18 N -0.53 -14.58 4.66 -865.98 -4.04 -18.62 16 19 C 0.05 1.17 5.14 86.32 0.44 1.61 16 20 C -0.11 -1.99 6.09 30.65 0.19 -1.80 16 21 C -0.12 -2.03 6.00 30.68 0.18 -1.84 16 22 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 23 C 0.05 1.46 4.76 86.33 0.41 1.87 16 24 C 0.05 1.94 5.42 86.44 0.47 2.41 16 25 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.03 1.39 6.94 -2.39 -0.02 1.37 16 29 H 0.06 3.36 5.95 -2.38 -0.01 3.34 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.04 1.68 5.70 -2.39 -0.01 1.67 16 32 H 0.06 2.44 7.59 -2.39 -0.02 2.42 16 33 H 0.08 2.22 5.70 -2.39 -0.01 2.21 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.03 0.73 7.36 -2.39 -0.02 0.72 16 36 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.03 0.84 6.21 -2.39 -0.01 0.83 16 44 H 0.06 2.03 5.96 -2.39 -0.01 2.01 16 45 H 0.03 1.29 6.66 -2.39 -0.02 1.27 16 46 H 0.07 2.74 6.21 -2.38 -0.01 2.72 16 Total: -1.00 -57.48 331.56 -0.68 -58.17 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.93 Total: 17.43 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.22 Total: -25.06 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -7.86 Total: -96.15 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -57.48 -0.68 -58.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220554397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.894 kcal (2) G-P(sol) polarization free energy of solvation -57.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds