Wall clock time and date at job start Mon Mar 30 2020 01:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 H 1.09003 * 109.47499 * 303.75844 * 3 2 1 5 5 C 1.50703 * 109.46671 * 183.76310 * 3 2 1 6 6 H 1.08008 * 119.99431 * 239.99802 * 5 3 2 7 7 C 1.37870 * 120.00401 * 60.00071 * 5 3 2 8 8 N 1.31519 * 119.99782 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00315 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47051 * 59.99964 * 9 7 5 11 11 H 1.48499 * 109.47345 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47158 * 300.00119 * 9 7 5 13 13 N 1.46896 * 109.47417 * 63.76393 * 3 2 1 14 14 C 1.47906 * 110.99891 * 60.33046 * 13 3 2 15 15 C 1.53997 * 107.05701 * 145.84821 * 14 13 3 16 16 C 1.54598 * 105.13732 * 358.77689 * 15 14 13 17 17 H 1.09000 * 110.72602 * 96.58039 * 16 15 14 18 18 N 1.46906 * 110.72089 * 219.68567 * 16 15 14 19 19 C 1.46848 * 110.99909 * 181.31843 * 18 16 15 20 20 C 1.53035 * 109.52645 * 185.83750 * 19 18 16 21 21 C 1.53117 * 109.27734 * 300.82154 * 20 19 18 22 22 C 1.53119 * 109.16189 * 57.65267 * 21 20 19 23 23 C 1.46850 * 110.99885 * 305.52633 * 18 16 15 24 24 C 1.48726 * 111.04884 * 177.91282 * 13 3 2 25 25 H 1.08993 * 109.47312 * 174.96352 * 1 2 3 26 26 H 1.08998 * 109.47060 * 294.96837 * 1 2 3 27 27 H 1.09002 * 109.46698 * 54.96316 * 1 2 3 28 28 H 1.09001 * 109.46918 * 240.00019 * 2 1 3 29 29 H 1.08999 * 109.46758 * 120.00400 * 2 1 3 30 30 H 0.97004 * 119.99787 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.91738 * 26.50106 * 14 13 3 32 32 H 1.08999 * 109.92113 * 265.19860 * 14 13 3 33 33 H 1.09000 * 110.30607 * 239.86462 * 15 14 13 34 34 H 1.08997 * 110.39383 * 117.73187 * 15 14 13 35 35 H 1.09006 * 109.46444 * 65.82283 * 19 18 16 36 36 H 1.08999 * 109.46407 * 305.85651 * 19 18 16 37 37 H 1.08995 * 109.50556 * 180.88184 * 20 19 18 38 38 H 1.09002 * 109.53138 * 60.78298 * 20 19 18 39 39 H 1.08998 * 109.52048 * 177.55315 * 21 20 19 40 40 H 1.08999 * 109.52548 * 297.74484 * 21 20 19 41 41 H 1.09000 * 109.50380 * 62.28277 * 22 21 20 42 42 H 1.09001 * 109.50779 * 182.40077 * 22 21 20 43 43 H 1.08999 * 109.46139 * 294.17779 * 23 18 16 44 44 H 1.09002 * 109.46127 * 54.15152 * 23 18 16 45 45 H 1.08994 * 110.84222 * 81.95756 * 24 13 3 46 46 H 1.09005 * 110.58233 * 318.76961 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9755 -0.8544 5 6 3.5442 1.4434 -0.0933 6 1 4.1336 1.8936 0.6919 7 6 4.1679 0.8696 -1.1807 8 7 3.4501 0.3210 -2.1365 9 14 6.0322 0.8714 -1.2966 10 1 6.6012 0.1457 -0.1326 11 1 6.4508 0.1988 -2.5527 12 1 6.5268 2.2716 -1.2970 13 7 1.6261 2.1083 1.2422 14 6 2.1816 1.4158 2.4253 15 6 2.4792 2.4955 3.4822 16 6 2.0890 3.8336 2.8134 17 1 1.0816 4.1309 3.1045 18 7 3.0574 4.8853 3.1512 19 6 2.6755 6.1669 2.5445 20 6 3.7769 7.1996 2.7944 21 6 3.9791 7.3679 4.3028 22 6 4.3285 6.0098 4.9177 23 6 3.2111 5.0116 4.6062 24 6 2.1469 3.5001 1.3015 25 1 -0.3633 -1.0236 -0.0902 26 1 -0.3633 0.4338 0.9316 27 1 -0.3633 0.5900 -0.8415 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8889 -0.0824 -2.9019 31 1 3.1015 0.8979 2.1543 32 1 1.4532 0.7050 2.8155 33 1 3.5393 2.4944 3.7359 34 1 1.8768 2.3291 4.3752 35 1 1.7432 6.5156 2.9887 36 1 2.5389 6.0342 1.4712 37 1 3.4861 8.1548 2.3575 38 1 4.7064 6.8587 2.3384 39 1 4.7924 8.0703 4.4851 40 1 3.0617 7.7466 4.7534 41 1 5.2665 5.6495 4.4952 42 1 4.4319 6.1150 5.9977 43 1 2.2763 5.3657 5.0407 44 1 3.4636 4.0398 5.0304 45 1 1.5092 4.1773 0.7335 46 1 3.1736 3.5408 0.9376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220554462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:42 Heat of formation + Delta-G solvation = -4.805392 kcal Electronic energy + Delta-G solvation = -21858.870354 eV Core-core repulsion = 18975.510053 eV Total energy + Delta-G solvation = -2883.360300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38746 -37.58401 -34.43719 -32.42168 -31.31179 -30.90929 -29.13382 -27.42283 -25.98505 -23.73371 -23.18596 -22.61079 -20.80341 -19.87700 -19.57046 -18.57485 -16.49876 -16.30228 -15.07301 -14.78521 -14.61610 -14.31945 -14.00496 -13.76939 -13.31085 -12.97330 -12.92190 -12.75223 -12.28268 -12.22307 -12.15771 -11.48441 -11.18849 -11.14604 -11.02754 -10.84198 -10.73946 -10.67789 -10.56843 -10.47333 -10.19468 -10.08995 -10.03464 -9.88464 -9.61434 -9.41921 -9.03729 -8.31639 -8.04104 -7.13267 -5.94769 -4.06829 3.31724 3.36396 3.40013 4.04722 4.43806 4.83686 4.86694 4.94184 5.13568 5.29308 5.32962 5.39292 5.40534 5.52014 5.58860 5.65189 5.68077 5.74181 5.88921 5.92426 5.99220 6.05264 6.13983 6.15218 6.33726 6.35929 6.38381 6.39963 6.48827 6.61328 6.70471 6.73014 6.89506 6.95194 7.09777 7.21265 7.31673 7.36076 7.46983 7.67778 7.78646 8.01651 8.19628 8.29077 8.48715 9.03258 9.59713 11.04832 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.006037 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.231622 B = 4637.057465 C = 5485.929900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.206 3.794 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.517 5.517 14 C 0.043 3.957 15 C -0.122 4.122 16 C 0.079 3.921 17 H 0.043 0.957 18 N -0.528 5.528 19 C 0.057 3.943 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.117 4.117 23 C 0.055 3.945 24 C 0.052 3.948 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 9.500 11.465 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.099 3.901 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.241 5.241 14 C -0.086 4.086 15 C -0.160 4.160 16 C -0.029 4.029 17 H 0.061 0.939 18 N -0.253 5.253 19 C -0.071 4.071 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.073 4.073 24 C -0.076 4.076 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.385 9.242 11.075 14.491 hybrid contribution 1.153 0.184 0.158 1.178 sum -0.232 9.426 11.234 14.666 Atomic orbital electron populations 1.21702 0.98916 0.98324 1.00482 1.21589 0.92157 0.99186 1.02002 1.19389 0.92965 0.91055 0.86700 0.94424 1.21704 0.92668 1.37547 1.05954 0.92230 1.24900 0.97782 0.95071 0.95648 1.69873 1.34933 1.38039 1.09648 0.86751 0.86349 0.78247 0.77230 1.20385 1.21358 1.20304 1.65112 1.54127 1.01120 1.03741 1.22656 0.99312 0.95813 0.90788 1.22480 1.01045 0.94445 0.98019 1.22588 0.92238 0.90600 0.97481 0.93915 1.61976 1.48056 1.05680 1.09601 1.22058 0.95789 0.89121 1.00178 1.21586 0.99909 0.98035 0.95961 1.21566 1.00923 0.97134 0.96104 1.21587 0.99364 0.94874 0.99633 1.22077 0.97077 0.99584 0.88598 1.23061 1.00577 0.91602 0.92386 0.95634 0.93683 0.94150 0.88984 0.94973 0.92919 0.91866 0.92503 0.91213 0.92722 0.95505 0.90322 0.91911 0.91003 0.92203 0.92628 0.91100 0.92043 0.95603 0.90587 0.92332 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.73 37.16 0.36 -2.47 16 2 C -0.11 -2.64 5.09 -26.73 -0.14 -2.78 16 3 C 0.21 5.09 1.87 -68.87 -0.13 4.96 16 4 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.54 -14.35 6.34 -34.44 -0.22 -14.57 16 6 H 0.06 1.61 6.05 -52.48 -0.32 1.29 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.95 11.30 55.43 0.63 -24.32 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 N -0.52 -11.04 4.81 -223.72 -1.08 -12.12 16 14 C 0.04 0.85 4.99 -2.75 -0.01 0.83 16 15 C -0.12 -2.01 5.32 -25.37 -0.14 -2.15 16 16 C 0.08 1.32 2.75 -65.85 -0.18 1.14 16 17 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 18 N -0.53 -7.91 4.50 -224.46 -1.01 -8.92 16 19 C 0.06 0.76 5.35 -3.83 -0.02 0.74 16 20 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 21 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 22 C -0.12 -1.28 6.09 -26.65 -0.16 -1.45 16 23 C 0.05 0.70 5.19 -3.83 -0.02 0.68 16 24 C 0.05 1.04 5.04 -1.79 -0.01 1.03 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 2.45 5.98 -51.93 -0.31 2.14 16 29 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.40 6.08 -51.93 -0.32 1.08 16 32 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.07 1.17 7.29 -51.93 -0.38 0.79 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.13 7.07 -51.93 -0.37 0.77 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.97 6.37 -51.93 -0.33 0.64 16 45 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 46 H 0.07 1.62 6.11 -51.93 -0.32 1.30 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -27.08 336.52 -11.06 -38.13 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.57 Total: 1.07 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.08 Total: -15.18 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -1.46 Total: -45.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.08 -11.06 -38.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220554462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.328 kcal (2) G-P(sol) polarization free energy of solvation -27.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds