Wall clock time and date at job start Mon Mar 30 2020 01:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 H 1.09003 * 109.47499 * 303.75844 * 3 2 1 5 5 C 1.50703 * 109.46671 * 183.76310 * 3 2 1 6 6 H 1.08008 * 119.99431 * 239.99802 * 5 3 2 7 7 C 1.37870 * 120.00401 * 60.00071 * 5 3 2 8 8 N 1.31519 * 119.99782 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00315 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47051 * 59.99964 * 9 7 5 11 11 H 1.48499 * 109.47345 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47158 * 300.00119 * 9 7 5 13 13 N 1.46896 * 109.47417 * 63.76393 * 3 2 1 14 14 C 1.47906 * 110.99891 * 60.33046 * 13 3 2 15 15 C 1.53997 * 107.05701 * 145.84821 * 14 13 3 16 16 C 1.54598 * 105.13732 * 358.77689 * 15 14 13 17 17 H 1.09000 * 110.72602 * 96.58039 * 16 15 14 18 18 N 1.46906 * 110.72089 * 219.68567 * 16 15 14 19 19 C 1.46848 * 110.99909 * 181.31843 * 18 16 15 20 20 C 1.53035 * 109.52645 * 185.83750 * 19 18 16 21 21 C 1.53117 * 109.27734 * 300.82154 * 20 19 18 22 22 C 1.53119 * 109.16189 * 57.65267 * 21 20 19 23 23 C 1.46850 * 110.99885 * 305.52633 * 18 16 15 24 24 C 1.48726 * 111.04884 * 177.91282 * 13 3 2 25 25 H 1.08993 * 109.47312 * 174.96352 * 1 2 3 26 26 H 1.08998 * 109.47060 * 294.96837 * 1 2 3 27 27 H 1.09002 * 109.46698 * 54.96316 * 1 2 3 28 28 H 1.09001 * 109.46918 * 240.00019 * 2 1 3 29 29 H 1.08999 * 109.46758 * 120.00400 * 2 1 3 30 30 H 0.97004 * 119.99787 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.91738 * 26.50106 * 14 13 3 32 32 H 1.08999 * 109.92113 * 265.19860 * 14 13 3 33 33 H 1.09000 * 110.30607 * 239.86462 * 15 14 13 34 34 H 1.08997 * 110.39383 * 117.73187 * 15 14 13 35 35 H 1.09006 * 109.46444 * 65.82283 * 19 18 16 36 36 H 1.08999 * 109.46407 * 305.85651 * 19 18 16 37 37 H 1.08995 * 109.50556 * 180.88184 * 20 19 18 38 38 H 1.09002 * 109.53138 * 60.78298 * 20 19 18 39 39 H 1.08998 * 109.52048 * 177.55315 * 21 20 19 40 40 H 1.08999 * 109.52548 * 297.74484 * 21 20 19 41 41 H 1.09000 * 109.50380 * 62.28277 * 22 21 20 42 42 H 1.09001 * 109.50779 * 182.40077 * 22 21 20 43 43 H 1.08999 * 109.46139 * 294.17779 * 23 18 16 44 44 H 1.09002 * 109.46127 * 54.15152 * 23 18 16 45 45 H 1.08994 * 110.84222 * 81.95756 * 24 13 3 46 46 H 1.09005 * 110.58233 * 318.76961 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9755 -0.8544 5 6 3.5442 1.4434 -0.0933 6 1 4.1336 1.8936 0.6919 7 6 4.1679 0.8696 -1.1807 8 7 3.4501 0.3210 -2.1365 9 14 6.0322 0.8714 -1.2966 10 1 6.6012 0.1457 -0.1326 11 1 6.4508 0.1988 -2.5527 12 1 6.5268 2.2716 -1.2970 13 7 1.6261 2.1083 1.2422 14 6 2.1816 1.4158 2.4253 15 6 2.4792 2.4955 3.4822 16 6 2.0890 3.8336 2.8134 17 1 1.0816 4.1309 3.1045 18 7 3.0574 4.8853 3.1512 19 6 2.6755 6.1669 2.5445 20 6 3.7769 7.1996 2.7944 21 6 3.9791 7.3679 4.3028 22 6 4.3285 6.0098 4.9177 23 6 3.2111 5.0116 4.6062 24 6 2.1469 3.5001 1.3015 25 1 -0.3633 -1.0236 -0.0902 26 1 -0.3633 0.4338 0.9316 27 1 -0.3633 0.5900 -0.8415 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8889 -0.0824 -2.9019 31 1 3.1015 0.8979 2.1543 32 1 1.4532 0.7050 2.8155 33 1 3.5393 2.4944 3.7359 34 1 1.8768 2.3291 4.3752 35 1 1.7432 6.5156 2.9887 36 1 2.5389 6.0342 1.4712 37 1 3.4861 8.1548 2.3575 38 1 4.7064 6.8587 2.3384 39 1 4.7924 8.0703 4.4851 40 1 3.0617 7.7466 4.7534 41 1 5.2665 5.6495 4.4952 42 1 4.4319 6.1150 5.9977 43 1 2.2763 5.3657 5.0407 44 1 3.4636 4.0398 5.0304 45 1 1.5092 4.1773 0.7335 46 1 3.1736 3.5408 0.9376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220554462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:41 Heat of formation + Delta-G solvation = -20.824839 kcal Electronic energy + Delta-G solvation = -21859.565009 eV Core-core repulsion = 18975.510053 eV Total energy + Delta-G solvation = -2884.054956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70404 -39.00497 -36.03620 -34.04098 -33.02765 -31.93609 -30.67487 -28.93757 -27.85013 -25.17435 -24.42014 -24.01020 -22.42108 -21.27869 -20.66939 -20.24956 -18.44577 -17.68706 -16.79684 -16.29084 -15.74236 -15.66946 -15.34780 -15.10936 -14.70715 -14.34452 -14.30646 -14.18124 -13.94720 -13.84842 -13.24980 -13.12623 -12.96830 -12.80868 -12.48117 -12.37465 -12.19342 -12.07617 -12.01411 -11.83471 -11.73936 -11.58451 -11.47740 -11.26580 -11.15351 -11.11945 -10.94708 -10.41636 -9.18615 -8.98180 -8.02536 -6.22654 1.37802 1.38520 1.45966 2.40911 2.87608 3.16579 3.65562 3.76134 3.90710 3.99757 4.06961 4.08042 4.26047 4.36951 4.50510 4.56606 4.59067 4.60844 4.69691 4.72781 4.79379 4.86639 4.90330 4.94799 4.96255 5.01950 5.09394 5.11306 5.15463 5.23336 5.24697 5.25758 5.34376 5.35249 5.45119 5.47702 5.52204 5.63445 5.78978 6.04215 6.18709 6.22495 6.29274 6.40442 6.55544 6.97323 7.46515 8.93430 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.006037 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.231622 B = 4637.057465 C = 5485.929900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.213 3.787 4 H 0.000 1.000 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.516 5.516 14 C 0.044 3.956 15 C -0.111 4.111 16 C 0.093 3.907 17 H 0.051 0.949 18 N -0.544 5.544 19 C 0.055 3.945 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.114 4.114 23 C 0.054 3.946 24 C 0.055 3.945 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 10.464 13.703 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.105 3.895 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.240 5.240 14 C -0.085 4.085 15 C -0.149 4.149 16 C -0.015 4.015 17 H 0.069 0.931 18 N -0.269 5.269 19 C -0.073 4.073 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.074 4.074 24 C -0.074 4.074 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.433 10.215 13.330 16.855 hybrid contribution 1.150 -0.086 -0.541 1.274 sum -0.283 10.130 12.789 16.317 Atomic orbital electron populations 1.21563 0.96257 0.99680 1.00707 1.21426 0.94485 0.98029 1.00430 1.19140 0.91800 0.91459 0.87057 0.98214 1.21884 0.93798 1.36957 1.05613 0.93133 1.25575 1.01653 0.95041 0.95528 1.69997 1.36307 1.38755 1.10037 0.85844 0.81755 0.78102 0.77335 1.19934 1.20834 1.20261 1.65030 1.54079 1.01811 1.03066 1.22663 0.98130 0.96802 0.90908 1.22407 1.01521 0.93053 0.97906 1.22364 0.93173 0.91439 0.94568 0.93126 1.61942 1.47584 1.05926 1.11492 1.22086 0.97041 0.89074 0.99071 1.21576 0.98357 0.97993 0.97317 1.21556 1.01983 0.97081 0.94711 1.21589 0.97951 0.94674 1.01003 1.22158 0.98158 1.00276 0.86794 1.22986 0.98366 0.90840 0.95220 0.93506 0.92584 0.94882 0.91940 0.95004 0.92987 0.94803 0.91287 0.91409 0.89761 0.94581 0.92188 0.90299 0.92598 0.90708 0.91632 0.92444 0.89831 0.94687 0.90617 0.92533 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.73 71.98 0.70 -4.37 16 2 C -0.11 -5.10 5.09 30.60 0.16 -4.94 16 3 C 0.21 10.88 1.87 44.17 0.08 10.96 16 4 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 5 C -0.54 -29.82 6.34 25.60 0.16 -29.66 16 6 H 0.05 2.82 6.05 -2.91 -0.02 2.80 16 7 C 0.02 1.21 5.30 84.65 0.45 1.66 16 8 N -0.91 -52.73 11.30 21.45 0.24 -52.49 16 9 Si 0.94 44.46 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.52 -22.27 4.81 -861.71 -4.14 -26.41 16 14 C 0.04 1.69 4.99 86.45 0.43 2.12 16 15 C -0.11 -3.47 5.32 31.48 0.17 -3.30 16 16 C 0.09 2.99 2.75 46.12 0.13 3.12 16 17 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 18 N -0.54 -15.62 4.50 -864.05 -3.89 -19.51 16 19 C 0.06 1.43 5.35 86.32 0.46 1.89 16 20 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 21 C -0.12 -2.05 6.00 30.67 0.18 -1.87 16 22 C -0.11 -2.21 6.09 30.65 0.19 -2.02 16 23 C 0.05 1.23 5.19 86.33 0.45 1.68 16 24 C 0.05 2.20 5.04 86.61 0.44 2.64 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.14 7.86 -2.39 -0.02 2.12 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 3.42 5.98 -2.39 -0.01 3.40 16 29 H 0.03 1.50 6.94 -2.39 -0.02 1.49 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.03 1.51 6.08 -2.39 -0.01 1.50 16 32 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 33 H 0.07 2.17 7.29 -2.39 -0.02 2.15 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 1.74 7.07 -2.39 -0.02 1.73 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 1.73 6.37 -2.39 -0.02 1.72 16 45 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 46 H 0.04 1.83 6.11 -2.38 -0.01 1.82 16 Total: -1.00 -59.36 336.52 -0.67 -60.03 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.91 Total: 16.27 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.18 Total: -24.38 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -7.79 Total: -98.41 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.36 -0.67 -60.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220554462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.208 kcal (2) G-P(sol) polarization free energy of solvation -59.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds