Wall clock time and date at job start Mon Mar 30 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00494 * 2 1 4 4 O 1.21280 * 119.99546 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00049 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.53937 * 59.90118 * 5 3 2 7 7 C 1.53092 * 109.48615 * 299.80326 * 5 3 2 8 8 C 1.53125 * 109.15410 * 182.40029 * 7 5 3 9 9 C 1.53045 * 109.27552 * 57.65417 * 8 7 5 10 10 N 1.46845 * 109.52748 * 300.82286 * 9 8 7 11 11 C 1.46894 * 111.00256 * 185.83757 * 10 9 8 12 12 C 1.53002 * 109.47032 * 39.90262 * 11 10 9 13 13 C 1.50705 * 115.54800 * 291.70131 * 12 11 10 14 14 H 1.07999 * 120.00047 * 143.82761 * 13 12 11 15 15 C 1.37878 * 119.99896 * 323.83406 * 13 12 11 16 16 N 1.31507 * 120.00059 * 353.56546 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 173.57026 * 15 13 12 18 18 H 1.48507 * 109.46795 * 89.99593 * 17 15 13 19 19 H 1.48493 * 109.47181 * 209.99378 * 17 15 13 20 20 H 1.48496 * 109.46926 * 329.99625 * 17 15 13 21 21 C 1.53002 * 117.50136 * 146.03443 * 12 11 10 22 22 C 1.52998 * 117.50384 * 77.36964 * 12 11 10 23 23 C 1.46850 * 111.19787 * 61.73770 * 10 9 8 24 24 H 1.09002 * 109.47159 * 60.00042 * 1 2 3 25 25 H 1.08993 * 109.47473 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47215 * 300.00898 * 1 2 3 27 27 H 0.97004 * 119.99858 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.52796 * 62.50312 * 7 5 3 29 29 H 1.09003 * 109.52829 * 302.30084 * 7 5 3 30 30 H 1.09002 * 109.50654 * 297.71763 * 8 7 5 31 31 H 1.08992 * 109.54018 * 177.61488 * 8 7 5 32 32 H 1.09001 * 109.45778 * 180.80330 * 9 8 7 33 33 H 1.08999 * 109.45752 * 60.84063 * 9 8 7 34 34 H 1.09004 * 109.46924 * 159.89630 * 11 10 9 35 35 H 1.08997 * 109.47599 * 279.90000 * 11 10 9 36 36 H 0.97004 * 120.00145 * 185.00393 * 16 15 13 37 37 H 1.08994 * 117.49428 * 359.97438 * 21 12 11 38 38 H 1.09003 * 117.49849 * 145.01719 * 21 12 11 39 39 H 1.08997 * 117.49988 * 214.98125 * 22 12 11 40 40 H 1.09000 * 117.49720 * 359.97438 * 22 12 11 41 41 H 1.09002 * 109.45984 * 58.27419 * 23 10 9 42 42 H 1.08996 * 109.46498 * 178.25384 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1670 -0.0006 6 1 4.0101 0.6521 -0.8895 7 6 4.1571 0.4494 1.2514 8 6 5.6871 0.5060 1.2736 9 6 6.1391 1.9677 1.2368 10 7 5.6253 2.6100 0.0203 11 6 6.1534 3.9736 -0.1184 12 6 7.6257 3.9951 0.2974 13 6 7.8906 3.7643 1.7630 14 1 8.7611 3.2053 2.0729 15 6 7.0214 4.2667 2.7081 16 7 6.0331 5.0526 2.3406 17 14 7.2479 3.8312 4.5104 18 1 8.1348 4.8334 5.1542 19 1 5.9272 3.8306 5.1892 20 1 7.8618 2.4836 4.6206 21 6 8.5558 4.9560 -0.4458 22 6 8.6496 3.4494 -0.6999 23 6 4.1569 2.6096 -0.0006 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 3.8314 -0.5906 1.2337 29 1 3.7615 0.9410 2.1402 30 1 6.0834 -0.0194 0.4047 31 1 6.0562 0.0338 2.1839 32 1 7.2283 2.0111 1.2381 33 1 5.7540 2.4891 2.1131 34 1 6.0644 4.2938 -1.1565 35 1 5.5856 4.6500 0.5204 36 1 5.4658 5.4644 3.0112 37 1 8.1189 5.5726 -1.2312 38 1 9.3596 5.4210 0.1252 39 1 9.5149 2.9239 -0.2961 40 1 8.2743 3.0747 -1.6522 41 1 3.7811 3.1280 0.8816 42 1 3.8063 3.1191 -0.8981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232285122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:53 Heat of formation + Delta-G solvation = -3.247250 kcal Electronic energy + Delta-G solvation = -21714.412620 eV Core-core repulsion = 18695.286791 eV Total energy + Delta-G solvation = -3019.125829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88980 -38.09855 -35.97087 -34.53611 -32.51619 -32.00444 -30.39373 -26.99270 -25.77749 -25.61221 -22.81666 -22.07964 -21.00797 -20.33863 -19.16612 -18.65362 -17.10565 -16.20423 -15.75507 -15.18171 -14.84328 -14.47393 -13.94750 -13.92311 -13.77301 -13.19777 -13.07107 -12.73018 -12.63116 -12.38399 -12.05829 -11.84841 -11.44431 -11.17673 -11.06301 -10.76737 -10.54122 -10.44444 -10.25089 -10.04135 -9.91981 -9.64139 -9.36869 -9.21864 -9.09055 -8.85186 -8.60802 -8.22285 -7.00425 -5.91607 -4.04992 2.83982 3.21990 3.30592 3.31357 3.32808 4.30968 4.79818 4.94530 5.08321 5.11267 5.22178 5.39948 5.43127 5.62280 5.67565 5.74001 5.83549 6.01743 6.10909 6.19556 6.39365 6.42709 6.45065 6.51780 6.53902 6.57118 6.73427 6.79514 6.82301 6.93236 7.04292 7.22302 7.32617 7.41138 7.51909 7.58568 7.64128 8.10039 8.33200 8.37925 8.42906 8.45822 8.83928 9.46374 10.92288 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.006495 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.415586 B = 4310.043599 C = 4828.631323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.518 3.482 4 O -0.537 6.537 5 C -0.100 4.100 6 H 0.099 0.901 7 C -0.106 4.106 8 C -0.124 4.124 9 C 0.052 3.948 10 N -0.529 5.529 11 C 0.075 3.925 12 C 0.052 3.948 13 C -0.480 4.480 14 H 0.062 0.938 15 C 0.071 3.929 16 N -0.876 5.876 17 Si 0.883 3.117 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.204 4.204 22 C -0.201 4.201 23 C 0.079 3.921 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.401 0.599 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.027 0.973 35 H 0.108 0.892 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -11.142 -3.184 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.304 3.696 4 O -0.413 6.413 5 C -0.122 4.122 6 H 0.117 0.883 7 C -0.144 4.144 8 C -0.162 4.162 9 C -0.075 4.075 10 N -0.253 5.253 11 C -0.052 4.052 12 C 0.051 3.949 13 C -0.517 4.517 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.514 5.514 17 Si 0.710 3.290 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.242 4.242 22 C -0.239 4.239 23 C -0.050 4.050 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.234 0.766 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.833 -10.569 -3.493 13.061 hybrid contribution -0.063 -0.114 1.562 1.568 sum -6.896 -10.684 -1.931 12.862 Atomic orbital electron populations 1.21476 0.80264 1.01713 1.02152 1.45866 1.07377 1.08999 1.77142 1.20990 0.90610 0.83225 0.74746 1.90692 1.70634 1.31367 1.48561 1.21336 0.89418 1.00593 1.00803 0.88260 1.21542 0.98081 0.98442 0.96376 1.21816 0.93270 1.00126 1.00967 1.22853 1.03566 0.89826 0.91265 1.62047 1.04533 1.20515 1.38169 1.22038 0.96065 0.89225 0.97850 1.19037 0.88115 0.96305 0.91434 1.20448 1.08318 1.34119 0.88855 0.92039 1.24894 0.94629 0.94994 0.98576 1.69652 1.18518 1.30400 1.32864 0.86717 0.77643 0.79285 0.85335 1.20587 1.21067 1.19422 1.22933 1.05706 0.91507 1.04102 1.22802 1.03596 0.96071 1.01402 1.21673 0.90061 0.92092 1.01163 0.92468 0.91030 0.92494 0.76593 0.92725 0.92174 0.91990 0.92363 0.86337 0.93973 0.95491 0.87464 0.92737 0.91862 0.90687 0.91144 0.91170 0.94384 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.70 59.84 0.64 1.50 16 2 N -0.74 -8.47 5.62 -67.08 -0.38 -8.84 16 3 C 0.52 8.23 7.15 -10.99 -0.08 8.15 16 4 O -0.54 -10.78 15.98 5.56 0.09 -10.69 16 5 C -0.10 -1.59 2.69 -91.70 -0.25 -1.84 16 6 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 7 C -0.11 -1.60 5.16 -26.62 -0.14 -1.73 16 8 C -0.12 -2.08 6.09 -26.64 -0.16 -2.24 16 9 C 0.05 1.11 3.86 -3.83 -0.01 1.10 16 10 N -0.53 -11.31 4.84 -234.67 -1.14 -12.45 16 11 C 0.07 1.79 5.03 -3.83 -0.02 1.77 16 12 C 0.05 1.24 1.27 -155.66 -0.20 1.05 16 13 C -0.48 -12.21 5.75 -34.44 -0.20 -12.41 16 14 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 15 C 0.07 1.82 3.19 -17.82 -0.06 1.76 16 16 N -0.88 -23.53 10.35 55.43 0.57 -22.95 16 17 Si 0.88 20.24 29.29 -169.99 -4.98 15.26 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C -0.20 -4.63 9.91 -26.69 -0.26 -4.89 16 22 C -0.20 -4.36 9.94 -26.69 -0.27 -4.63 16 23 C 0.08 1.60 3.95 -3.83 -0.02 1.59 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.40 3.38 8.31 -40.82 -0.34 3.04 16 28 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 2.75 4.78 -51.93 -0.25 2.50 16 33 H 0.04 1.01 5.79 -51.93 -0.30 0.71 16 34 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.11 2.87 5.03 -51.93 -0.26 2.61 16 36 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -28.84 323.63 -8.97 -37.81 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.00 Total: 7.82 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.02 Total: -10.83 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.94 Total: -44.25 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.98 Total: 15.26 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.84 -8.97 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232285122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.560 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds