Wall clock time and date at job start Mon Mar 30 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00494 * 2 1 4 4 O 1.21280 * 119.99546 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00049 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.53937 * 59.90118 * 5 3 2 7 7 C 1.53092 * 109.48615 * 299.80326 * 5 3 2 8 8 C 1.53125 * 109.15410 * 182.40029 * 7 5 3 9 9 C 1.53045 * 109.27552 * 57.65417 * 8 7 5 10 10 N 1.46845 * 109.52748 * 300.82286 * 9 8 7 11 11 C 1.46894 * 111.00256 * 185.83757 * 10 9 8 12 12 C 1.53002 * 109.47032 * 39.90262 * 11 10 9 13 13 C 1.50705 * 115.54800 * 291.70131 * 12 11 10 14 14 H 1.07999 * 120.00047 * 143.82761 * 13 12 11 15 15 C 1.37878 * 119.99896 * 323.83406 * 13 12 11 16 16 N 1.31507 * 120.00059 * 353.56546 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 173.57026 * 15 13 12 18 18 H 1.48507 * 109.46795 * 89.99593 * 17 15 13 19 19 H 1.48493 * 109.47181 * 209.99378 * 17 15 13 20 20 H 1.48496 * 109.46926 * 329.99625 * 17 15 13 21 21 C 1.53002 * 117.50136 * 146.03443 * 12 11 10 22 22 C 1.52998 * 117.50384 * 77.36964 * 12 11 10 23 23 C 1.46850 * 111.19787 * 61.73770 * 10 9 8 24 24 H 1.09002 * 109.47159 * 60.00042 * 1 2 3 25 25 H 1.08993 * 109.47473 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47215 * 300.00898 * 1 2 3 27 27 H 0.97004 * 119.99858 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.52796 * 62.50312 * 7 5 3 29 29 H 1.09003 * 109.52829 * 302.30084 * 7 5 3 30 30 H 1.09002 * 109.50654 * 297.71763 * 8 7 5 31 31 H 1.08992 * 109.54018 * 177.61488 * 8 7 5 32 32 H 1.09001 * 109.45778 * 180.80330 * 9 8 7 33 33 H 1.08999 * 109.45752 * 60.84063 * 9 8 7 34 34 H 1.09004 * 109.46924 * 159.89630 * 11 10 9 35 35 H 1.08997 * 109.47599 * 279.90000 * 11 10 9 36 36 H 0.97004 * 120.00145 * 185.00393 * 16 15 13 37 37 H 1.08994 * 117.49428 * 359.97438 * 21 12 11 38 38 H 1.09003 * 117.49849 * 145.01719 * 21 12 11 39 39 H 1.08997 * 117.49988 * 214.98125 * 22 12 11 40 40 H 1.09000 * 117.49720 * 359.97438 * 22 12 11 41 41 H 1.09002 * 109.45984 * 58.27419 * 23 10 9 42 42 H 1.08996 * 109.46498 * 178.25384 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1670 -0.0006 6 1 4.0101 0.6521 -0.8895 7 6 4.1571 0.4494 1.2514 8 6 5.6871 0.5060 1.2736 9 6 6.1391 1.9677 1.2368 10 7 5.6253 2.6100 0.0203 11 6 6.1534 3.9736 -0.1184 12 6 7.6257 3.9951 0.2974 13 6 7.8906 3.7643 1.7630 14 1 8.7611 3.2053 2.0729 15 6 7.0214 4.2667 2.7081 16 7 6.0331 5.0526 2.3406 17 14 7.2479 3.8312 4.5104 18 1 8.1348 4.8334 5.1542 19 1 5.9272 3.8306 5.1892 20 1 7.8618 2.4836 4.6206 21 6 8.5558 4.9560 -0.4458 22 6 8.6496 3.4494 -0.6999 23 6 4.1569 2.6096 -0.0006 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 3.8314 -0.5906 1.2337 29 1 3.7615 0.9410 2.1402 30 1 6.0834 -0.0194 0.4047 31 1 6.0562 0.0338 2.1839 32 1 7.2283 2.0111 1.2381 33 1 5.7540 2.4891 2.1131 34 1 6.0644 4.2938 -1.1565 35 1 5.5856 4.6500 0.5204 36 1 5.4658 5.4644 3.0112 37 1 8.1189 5.5726 -1.2312 38 1 9.3596 5.4210 0.1252 39 1 9.5149 2.9239 -0.2961 40 1 8.2743 3.0747 -1.6522 41 1 3.7811 3.1280 0.8816 42 1 3.8063 3.1191 -0.8981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232285122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:52 Heat of formation + Delta-G solvation = -23.250742 kcal Electronic energy + Delta-G solvation = -21715.280037 eV Core-core repulsion = 18695.286791 eV Total energy + Delta-G solvation = -3019.993245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21954 -39.73316 -37.60967 -35.66366 -34.34978 -33.65684 -31.86964 -28.25679 -27.60809 -27.18572 -24.24124 -23.62928 -22.79238 -21.68353 -20.75097 -20.33597 -18.48927 -17.92713 -16.95246 -16.75799 -16.42593 -15.95152 -15.68647 -15.50942 -15.11451 -14.72953 -14.63017 -14.22624 -14.10711 -13.53414 -13.32555 -13.23422 -13.10305 -12.94208 -12.86163 -12.48492 -12.26878 -12.18624 -11.99148 -11.57056 -11.53189 -11.14007 -11.08250 -10.82162 -10.68288 -10.44850 -10.13610 -10.09630 -8.84842 -7.87426 -6.06438 1.36690 1.41520 1.48518 1.60499 2.25560 2.39622 3.03125 3.35585 3.71511 3.80721 3.89748 4.05199 4.33577 4.36232 4.46539 4.54853 4.61115 4.62085 4.69124 4.72744 4.85348 4.93908 4.96423 4.96721 5.04001 5.07599 5.11573 5.15624 5.24819 5.27240 5.41369 5.45578 5.58535 5.62591 5.69279 5.82752 6.14327 6.46634 6.52865 6.59235 6.64697 6.86743 7.26670 7.46432 8.93001 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.006495 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.415586 B = 4310.043599 C = 4828.631323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.719 5.719 3 C 0.516 3.484 4 O -0.590 6.590 5 C -0.091 4.091 6 H 0.126 0.874 7 C -0.100 4.100 8 C -0.118 4.118 9 C 0.055 3.945 10 N -0.517 5.517 11 C 0.079 3.921 12 C 0.025 3.975 13 C -0.480 4.480 14 H 0.058 0.942 15 C 0.036 3.964 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.256 1.256 21 C -0.207 4.207 22 C -0.175 4.175 23 C 0.085 3.915 24 H 0.048 0.952 25 H 0.117 0.883 26 H 0.043 0.957 27 H 0.420 0.580 28 H 0.105 0.895 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.007 0.993 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.083 0.917 41 H -0.005 1.005 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -14.509 -3.673 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.303 3.697 4 O -0.470 6.470 5 C -0.112 4.112 6 H 0.144 0.856 7 C -0.137 4.137 8 C -0.156 4.156 9 C -0.072 4.072 10 N -0.241 5.241 11 C -0.049 4.049 12 C 0.024 3.976 13 C -0.518 4.518 14 H 0.076 0.924 15 C -0.163 4.163 16 N -0.541 5.541 17 Si 0.757 3.243 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.180 1.180 21 C -0.246 4.246 22 C -0.212 4.212 23 C -0.044 4.044 24 H 0.067 0.933 25 H 0.135 0.865 26 H 0.062 0.938 27 H 0.257 0.743 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.013 0.987 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.720 -14.009 -3.986 16.040 hybrid contribution -0.099 0.937 1.671 1.918 sum -6.819 -13.072 -2.314 14.924 Atomic orbital electron populations 1.21674 0.78841 1.04344 1.01143 1.45691 1.08292 1.08360 1.74782 1.20952 0.90545 0.83744 0.74499 1.90681 1.71412 1.33519 1.51375 1.21242 0.89817 0.97576 1.02612 0.85626 1.21527 0.96692 1.00882 0.94643 1.21756 0.94524 0.96622 1.02682 1.22673 1.02284 0.92645 0.89626 1.62119 1.05049 1.18858 1.38070 1.21846 0.96032 0.90180 0.96838 1.19110 0.88586 0.98373 0.91523 1.20576 1.07946 1.33482 0.89773 0.92369 1.25402 0.94436 0.94990 1.01510 1.69839 1.19350 1.31664 1.33274 0.85961 0.77022 0.79608 0.81747 1.20594 1.21928 1.17977 1.22944 1.05154 0.92445 1.04050 1.22770 1.02491 0.95068 1.00912 1.21581 0.89211 0.95064 0.98533 0.93283 0.86507 0.93825 0.74282 0.87691 0.94444 0.89942 0.90879 0.88213 0.97469 0.95629 0.90676 0.93533 0.91175 0.91118 0.90295 0.89854 0.98661 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 10.70 127.77 1.37 2.77 16 2 N -0.72 -14.14 5.62 -484.53 -2.72 -16.86 16 3 C 0.52 15.74 7.15 87.66 0.63 16.36 16 4 O -0.59 -24.14 15.98 -3.03 -0.05 -24.19 16 5 C -0.09 -2.75 2.69 -11.50 -0.03 -2.78 16 6 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 7 C -0.10 -2.70 5.16 30.67 0.16 -2.54 16 8 C -0.12 -3.63 6.09 30.65 0.19 -3.44 16 9 C 0.06 2.34 3.86 86.33 0.33 2.67 16 10 N -0.52 -22.30 4.84 -896.35 -4.34 -26.64 16 11 C 0.08 3.86 5.03 86.31 0.43 4.30 16 12 C 0.02 1.19 1.27 -52.93 -0.07 1.13 16 13 C -0.48 -24.67 5.75 25.60 0.15 -24.52 16 14 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 15 C 0.04 1.87 3.19 84.66 0.27 2.14 16 16 N -0.90 -50.62 10.35 21.45 0.22 -50.39 16 17 Si 0.93 42.15 29.29 68.60 2.01 44.16 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 C -0.21 -9.35 9.91 30.62 0.30 -9.05 16 22 C -0.18 -7.34 9.94 30.62 0.30 -7.04 16 23 C 0.09 3.54 3.95 86.33 0.34 3.88 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.42 5.01 8.31 -92.71 -0.77 4.24 16 28 H 0.10 1.85 7.65 -2.39 -0.02 1.83 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.10 4.58 4.78 -2.39 -0.01 4.57 16 33 H 0.01 0.35 5.79 -2.39 -0.01 0.33 16 34 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.08 4.25 5.03 -2.39 -0.01 4.23 16 36 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 37 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.00 -0.25 8.08 -2.39 -0.02 -0.27 16 42 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -66.25 323.63 -0.27 -66.53 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.23 Total: 23.51 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.38 Total: -16.12 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -6.84 Total: -93.89 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.01 Total: 44.16 kcal Total: -66.25 -0.27 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232285122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.275 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds