Wall clock time and date at job start Mon Mar 30 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34767 * 120.00174 * 2 1 4 4 O 1.21282 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00047 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.53519 * 300.09475 * 5 3 2 7 7 C 1.53113 * 109.49629 * 60.20472 * 5 3 2 8 8 C 1.53111 * 109.15489 * 177.60733 * 7 5 3 9 9 C 1.53039 * 109.28098 * 302.33756 * 8 7 5 10 10 N 1.46850 * 109.52017 * 59.17415 * 9 8 7 11 11 C 1.46903 * 110.99690 * 174.16203 * 10 9 8 12 12 C 1.52999 * 109.47218 * 306.58948 * 11 10 9 13 13 C 1.50695 * 115.55123 * 305.98183 * 12 11 10 14 14 H 1.08001 * 120.00285 * 144.28581 * 13 12 11 15 15 C 1.37879 * 120.00107 * 324.27719 * 13 12 11 16 16 N 1.31518 * 119.99657 * 351.51532 * 15 13 12 17 17 Si 1.86798 * 120.00133 * 171.50797 * 15 13 12 18 18 H 1.48498 * 109.46936 * 95.00084 * 17 15 13 19 19 H 1.48502 * 109.46889 * 215.00239 * 17 15 13 20 20 H 1.48502 * 109.46968 * 334.99768 * 17 15 13 21 21 C 1.53007 * 117.49676 * 160.31067 * 12 11 10 22 22 C 1.53005 * 117.49578 * 91.65158 * 12 11 10 23 23 C 1.46839 * 111.20038 * 298.26356 * 10 9 8 24 24 H 1.08996 * 109.46961 * 59.99824 * 1 2 3 25 25 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46907 * 300.00236 * 1 2 3 27 27 H 0.96999 * 119.99699 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.53480 * 57.69477 * 7 5 3 29 29 H 1.09007 * 109.51977 * 297.50247 * 7 5 3 30 30 H 1.09004 * 109.50647 * 182.39523 * 8 7 5 31 31 H 1.09009 * 109.53624 * 62.29969 * 8 7 5 32 32 H 1.09001 * 109.45774 * 299.16255 * 9 8 7 33 33 H 1.08998 * 109.46555 * 179.19699 * 9 8 7 34 34 H 1.08998 * 109.46857 * 66.59088 * 11 10 9 35 35 H 1.08994 * 109.46883 * 186.58484 * 11 10 9 36 36 H 0.97007 * 119.99777 * 185.00437 * 16 15 13 37 37 H 1.09002 * 117.49525 * 359.97438 * 21 12 11 38 38 H 1.08995 * 117.49870 * 145.02266 * 21 12 11 39 39 H 1.09003 * 117.49648 * 214.97460 * 22 12 11 40 40 H 1.08997 * 117.49968 * 359.97438 * 22 12 11 41 41 H 1.09005 * 109.46011 * 181.76042 * 23 10 9 42 42 H 1.08996 * 109.46325 * 301.73346 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6460 1.1671 -0.0006 6 1 4.0107 0.6518 0.8879 7 6 4.1565 0.4501 -1.2535 8 6 5.6863 0.5068 -1.2765 9 6 6.1385 1.9684 -1.2393 10 7 5.6252 2.6100 -0.0221 11 6 6.1535 3.9736 0.1170 12 6 7.6807 3.9402 0.0307 13 6 8.3654 2.9993 0.9882 14 1 9.2563 2.4711 0.6821 15 6 7.8546 2.8130 2.2553 16 7 6.8738 3.5750 2.6875 17 14 8.5557 1.4780 3.3579 18 1 9.5920 2.0632 4.2460 19 1 7.4673 0.8959 4.1837 20 1 9.1649 0.4137 2.5205 21 6 8.3979 5.2485 -0.3085 22 6 8.3145 4.1288 -1.3491 23 6 4.1570 2.6096 -0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 3.7602 0.9421 -2.1418 29 1 3.8308 -0.5900 -1.2361 30 1 6.0544 0.0352 -2.1877 31 1 6.0837 -0.0193 -0.4084 32 1 5.7529 2.4902 -2.1151 33 1 7.2276 2.0119 -1.2412 34 1 5.7580 4.5998 -0.6827 35 1 5.8529 4.3830 1.0814 36 1 6.5632 3.4932 3.6029 37 1 7.7816 6.1328 -0.4706 38 1 9.3651 5.4285 0.1606 39 1 9.2271 3.5727 -1.5640 40 1 7.6435 4.2763 -2.1953 41 1 3.8069 3.1189 0.8975 42 1 3.7806 3.1283 -0.8821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232285123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:55 Heat of formation + Delta-G solvation = -9.747253 kcal Electronic energy + Delta-G solvation = -21542.241072 eV Core-core repulsion = 18522.833381 eV Total energy + Delta-G solvation = -3019.407690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93486 -38.04504 -36.04371 -34.56465 -32.37359 -31.92690 -30.57512 -26.97951 -25.93184 -25.18188 -23.15208 -22.21375 -21.07738 -20.38666 -19.18763 -18.80745 -17.13377 -16.10272 -15.75321 -15.23597 -14.69853 -14.56621 -14.07474 -13.98250 -13.60468 -13.55078 -13.09104 -12.76982 -12.54622 -12.40819 -12.15960 -12.05574 -11.32815 -11.20643 -10.95671 -10.88753 -10.55873 -10.45208 -10.32848 -10.21402 -9.99541 -9.83619 -9.51143 -9.18129 -9.11814 -8.89909 -8.52453 -7.92655 -7.08323 -5.82559 -3.87423 2.80740 3.27645 3.36222 3.44125 3.47412 4.50807 4.71126 4.94467 5.05299 5.14436 5.18310 5.31862 5.40524 5.56461 5.67383 5.68726 5.71343 5.87354 5.97149 6.12627 6.20006 6.21821 6.28633 6.37181 6.42164 6.47574 6.58323 6.67308 6.74168 6.79270 6.82913 6.93802 7.01531 7.28055 7.40175 7.49892 7.71016 8.11214 8.25561 8.30451 8.37391 8.61819 9.06212 9.72755 11.18309 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.006402 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.582738 B = 4372.624734 C = 4900.570213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.520 3.480 4 O -0.539 6.539 5 C -0.102 4.102 6 H 0.106 0.894 7 C -0.105 4.105 8 C -0.114 4.114 9 C 0.055 3.945 10 N -0.498 5.498 11 C 0.106 3.894 12 C 0.066 3.934 13 C -0.479 4.479 14 H 0.053 0.947 15 C 0.091 3.909 16 N -0.870 5.870 17 Si 0.889 3.111 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.207 4.207 22 C -0.220 4.220 23 C 0.083 3.917 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.401 0.599 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.009 0.991 33 H 0.096 0.904 34 H -0.017 1.017 35 H 0.118 0.882 36 H 0.257 0.743 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -8.660 -5.964 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.393 5.393 3 C 0.306 3.694 4 O -0.415 6.415 5 C -0.124 4.124 6 H 0.124 0.876 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.074 4.074 10 N -0.221 5.221 11 C -0.021 4.021 12 C 0.065 3.935 13 C -0.516 4.516 14 H 0.071 0.929 15 C -0.113 4.113 16 N -0.506 5.506 17 Si 0.717 3.283 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.245 4.245 22 C -0.257 4.257 23 C -0.046 4.046 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.235 0.765 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.114 0.886 34 H 0.001 0.999 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.901 -8.172 -5.407 13.238 hybrid contribution 0.242 -0.620 -0.138 0.680 sum -8.659 -8.792 -5.545 13.529 Atomic orbital electron populations 1.21482 0.80210 1.01763 1.02144 1.45862 1.07417 1.09014 1.77016 1.20945 0.90527 0.83234 0.74673 1.90681 1.70656 1.31385 1.48783 1.21354 0.89466 1.00496 1.01057 0.87636 1.21539 0.97587 0.98939 0.96280 1.21587 0.93602 0.98253 1.01759 1.22152 1.02213 0.92700 0.90289 1.61641 1.04010 1.20747 1.35665 1.21754 0.93919 0.85719 1.00702 1.18970 0.90640 0.93471 0.90408 1.20249 1.10101 1.24262 0.97034 0.92852 1.24736 0.93894 0.95076 0.97585 1.69780 1.26872 1.38320 1.15657 0.86656 0.78293 0.82809 0.80528 1.21353 1.21287 1.20020 1.22991 1.02809 0.93470 1.05274 1.22987 1.02947 1.05623 0.94157 1.21671 0.89499 0.92521 1.00951 0.92516 0.90997 0.92413 0.76531 0.92316 0.92298 0.92208 0.90790 0.97318 0.88604 0.99859 0.86473 0.93279 0.92024 0.90485 0.90867 0.91939 0.90527 0.95949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.70 59.85 0.64 1.48 16 2 N -0.74 -8.33 5.62 -67.08 -0.38 -8.70 16 3 C 0.52 8.08 7.15 -10.99 -0.08 8.00 16 4 O -0.54 -10.48 15.98 5.56 0.09 -10.40 16 5 C -0.10 -1.62 2.69 -91.69 -0.25 -1.87 16 6 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 7 C -0.11 -1.43 5.16 -26.62 -0.14 -1.57 16 8 C -0.11 -1.76 6.09 -26.65 -0.16 -1.92 16 9 C 0.05 1.05 4.80 -3.83 -0.02 1.03 16 10 N -0.50 -10.69 4.34 -234.67 -1.02 -11.71 16 11 C 0.11 2.52 4.17 -3.82 -0.02 2.50 16 12 C 0.07 1.60 1.08 -155.66 -0.17 1.43 16 13 C -0.48 -12.67 8.31 -34.44 -0.29 -12.95 16 14 H 0.05 1.43 7.83 -52.49 -0.41 1.02 16 15 C 0.09 2.41 5.19 -17.82 -0.09 2.32 16 16 N -0.87 -23.65 10.69 55.43 0.59 -23.06 16 17 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.21 -4.74 9.96 -26.69 -0.27 -5.01 16 22 C -0.22 -4.76 8.16 -26.69 -0.22 -4.97 16 23 C 0.08 1.63 4.04 -3.84 -0.02 1.61 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.40 3.36 8.31 -40.82 -0.34 3.02 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.62 7.66 -51.92 -0.40 0.22 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 2.01 5.36 -51.93 -0.28 1.74 16 34 H -0.02 -0.39 8.09 -51.93 -0.42 -0.81 16 35 H 0.12 3.10 5.99 -51.93 -0.31 2.79 16 36 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 42 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -29.79 330.44 -9.03 -38.82 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.21 Total: 4.11 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.06 Total: -9.93 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.80 Total: -43.47 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.79 -9.03 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232285123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.074 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds