Wall clock time and date at job start Mon Mar 30 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34767 * 120.00174 * 2 1 4 4 O 1.21282 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00047 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.53519 * 300.09475 * 5 3 2 7 7 C 1.53113 * 109.49629 * 60.20472 * 5 3 2 8 8 C 1.53111 * 109.15489 * 177.60733 * 7 5 3 9 9 C 1.53039 * 109.28098 * 302.33756 * 8 7 5 10 10 N 1.46850 * 109.52017 * 59.17415 * 9 8 7 11 11 C 1.46903 * 110.99690 * 174.16203 * 10 9 8 12 12 C 1.52999 * 109.47218 * 306.58948 * 11 10 9 13 13 C 1.50695 * 115.55123 * 305.98183 * 12 11 10 14 14 H 1.08001 * 120.00285 * 144.28581 * 13 12 11 15 15 C 1.37879 * 120.00107 * 324.27719 * 13 12 11 16 16 N 1.31518 * 119.99657 * 351.51532 * 15 13 12 17 17 Si 1.86798 * 120.00133 * 171.50797 * 15 13 12 18 18 H 1.48498 * 109.46936 * 95.00084 * 17 15 13 19 19 H 1.48502 * 109.46889 * 215.00239 * 17 15 13 20 20 H 1.48502 * 109.46968 * 334.99768 * 17 15 13 21 21 C 1.53007 * 117.49676 * 160.31067 * 12 11 10 22 22 C 1.53005 * 117.49578 * 91.65158 * 12 11 10 23 23 C 1.46839 * 111.20038 * 298.26356 * 10 9 8 24 24 H 1.08996 * 109.46961 * 59.99824 * 1 2 3 25 25 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46907 * 300.00236 * 1 2 3 27 27 H 0.96999 * 119.99699 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.53480 * 57.69477 * 7 5 3 29 29 H 1.09007 * 109.51977 * 297.50247 * 7 5 3 30 30 H 1.09004 * 109.50647 * 182.39523 * 8 7 5 31 31 H 1.09009 * 109.53624 * 62.29969 * 8 7 5 32 32 H 1.09001 * 109.45774 * 299.16255 * 9 8 7 33 33 H 1.08998 * 109.46555 * 179.19699 * 9 8 7 34 34 H 1.08998 * 109.46857 * 66.59088 * 11 10 9 35 35 H 1.08994 * 109.46883 * 186.58484 * 11 10 9 36 36 H 0.97007 * 119.99777 * 185.00437 * 16 15 13 37 37 H 1.09002 * 117.49525 * 359.97438 * 21 12 11 38 38 H 1.08995 * 117.49870 * 145.02266 * 21 12 11 39 39 H 1.09003 * 117.49648 * 214.97460 * 22 12 11 40 40 H 1.08997 * 117.49968 * 359.97438 * 22 12 11 41 41 H 1.09005 * 109.46011 * 181.76042 * 23 10 9 42 42 H 1.08996 * 109.46325 * 301.73346 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6460 1.1671 -0.0006 6 1 4.0107 0.6518 0.8879 7 6 4.1565 0.4501 -1.2535 8 6 5.6863 0.5068 -1.2765 9 6 6.1385 1.9684 -1.2393 10 7 5.6252 2.6100 -0.0221 11 6 6.1535 3.9736 0.1170 12 6 7.6807 3.9402 0.0307 13 6 8.3654 2.9993 0.9882 14 1 9.2563 2.4711 0.6821 15 6 7.8546 2.8130 2.2553 16 7 6.8738 3.5750 2.6875 17 14 8.5557 1.4780 3.3579 18 1 9.5920 2.0632 4.2460 19 1 7.4673 0.8959 4.1837 20 1 9.1649 0.4137 2.5205 21 6 8.3979 5.2485 -0.3085 22 6 8.3145 4.1288 -1.3491 23 6 4.1570 2.6096 -0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 3.7602 0.9421 -2.1418 29 1 3.8308 -0.5900 -1.2361 30 1 6.0544 0.0352 -2.1877 31 1 6.0837 -0.0193 -0.4084 32 1 5.7529 2.4902 -2.1151 33 1 7.2276 2.0119 -1.2412 34 1 5.7580 4.5998 -0.6827 35 1 5.8529 4.3830 1.0814 36 1 6.5632 3.4932 3.6029 37 1 7.7816 6.1328 -0.4706 38 1 9.3651 5.4285 0.1606 39 1 9.2271 3.5727 -1.5640 40 1 7.6435 4.2763 -2.1953 41 1 3.8069 3.1189 0.8975 42 1 3.7806 3.1283 -0.8821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232285123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:55 Heat of formation + Delta-G solvation = -29.649056 kcal Electronic energy + Delta-G solvation = -21543.104079 eV Core-core repulsion = 18522.833381 eV Total energy + Delta-G solvation = -3020.270697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21872 -39.61978 -37.69005 -35.66446 -34.02859 -33.76636 -31.94821 -28.16633 -27.53799 -27.06235 -24.50291 -23.69390 -22.85305 -21.65722 -20.69835 -20.52543 -18.44421 -17.84262 -16.96909 -16.59029 -16.45388 -16.07123 -15.70510 -15.31732 -15.18758 -15.04132 -14.43169 -14.20976 -14.10809 -13.53370 -13.45236 -13.19713 -13.08794 -13.01078 -12.78086 -12.37532 -12.33987 -12.23656 -11.92494 -11.70889 -11.62426 -11.34148 -11.06580 -10.85866 -10.76629 -10.37294 -10.12948 -9.87267 -8.77971 -7.83694 -5.94921 1.48109 1.51756 1.59669 1.60213 2.24054 2.55048 3.13228 3.40057 3.68726 3.76889 3.87983 3.99480 4.28901 4.30613 4.36613 4.48582 4.51316 4.53609 4.62219 4.72027 4.75457 4.82685 4.87929 4.91449 4.94638 4.96568 5.06095 5.09675 5.13713 5.17630 5.31971 5.44501 5.49852 5.53404 5.56880 5.71907 6.10337 6.45403 6.52845 6.61037 6.73742 7.03496 7.24801 7.67065 9.14728 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.006402 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.582738 B = 4372.624734 C = 4900.570213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.720 5.720 3 C 0.519 3.481 4 O -0.587 6.587 5 C -0.096 4.096 6 H 0.106 0.894 7 C -0.096 4.096 8 C -0.109 4.109 9 C 0.053 3.947 10 N -0.509 5.509 11 C 0.115 3.885 12 C 0.041 3.959 13 C -0.489 4.489 14 H 0.045 0.955 15 C 0.052 3.948 16 N -0.891 5.891 17 Si 0.943 3.057 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.269 1.269 21 C -0.212 4.212 22 C -0.191 4.191 23 C 0.089 3.911 24 H 0.049 0.951 25 H 0.115 0.885 26 H 0.045 0.955 27 H 0.419 0.581 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.010 0.990 33 H 0.076 0.924 34 H -0.021 1.021 35 H 0.084 0.916 36 H 0.254 0.746 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -11.453 -7.080 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.306 3.694 4 O -0.467 6.467 5 C -0.117 4.117 6 H 0.124 0.876 7 C -0.134 4.134 8 C -0.146 4.146 9 C -0.074 4.074 10 N -0.232 5.232 11 C -0.012 4.012 12 C 0.040 3.960 13 C -0.526 4.526 14 H 0.064 0.936 15 C -0.149 4.149 16 N -0.529 5.529 17 Si 0.770 3.230 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.194 1.194 21 C -0.251 4.251 22 C -0.229 4.229 23 C -0.040 4.040 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.064 0.936 27 H 0.256 0.744 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.094 0.906 34 H -0.003 1.003 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -9.231 -11.025 -6.536 15.795 hybrid contribution 0.344 0.278 0.196 0.484 sum -8.887 -10.746 -6.340 15.319 Atomic orbital electron populations 1.21682 0.78703 1.04335 1.01249 1.45709 1.08376 1.08369 1.74749 1.20844 0.90303 0.83778 0.74504 1.90668 1.71321 1.33345 1.51411 1.21250 0.90079 0.97833 1.02587 0.87638 1.21528 0.96080 1.01105 0.94653 1.21562 0.94893 0.95259 1.02915 1.22181 1.00982 0.95172 0.89104 1.61602 1.04871 1.19379 1.37334 1.21475 0.93895 0.87174 0.98697 1.19019 0.90809 0.94093 0.92087 1.20398 1.09974 1.24607 0.97647 0.93649 1.25313 0.94290 0.96622 0.98724 1.69944 1.27858 1.39467 1.15610 0.85805 0.77522 0.80734 0.78949 1.21377 1.21334 1.19359 1.23004 1.02446 0.93652 1.05957 1.22920 1.02777 1.03857 0.93305 1.21551 0.88553 0.95184 0.98751 0.93175 0.86642 0.93646 0.74406 0.92256 0.87917 0.89198 0.91568 0.97233 0.90566 1.00285 0.89767 0.93673 0.91336 0.90985 0.90195 0.90497 0.93799 0.97118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.70 127.77 1.37 2.73 16 2 N -0.72 -14.13 5.62 -484.52 -2.72 -16.85 16 3 C 0.52 15.57 7.15 87.66 0.63 16.20 16 4 O -0.59 -23.15 15.98 -3.04 -0.05 -23.20 16 5 C -0.10 -2.94 2.69 -11.49 -0.03 -2.97 16 6 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 7 C -0.10 -2.30 5.16 30.67 0.16 -2.14 16 8 C -0.11 -3.05 6.09 30.64 0.19 -2.86 16 9 C 0.05 2.00 4.80 86.33 0.41 2.41 16 10 N -0.51 -22.20 4.34 -896.37 -3.89 -26.09 16 11 C 0.12 5.66 4.17 86.30 0.36 6.02 16 12 C 0.04 1.99 1.08 -52.93 -0.06 1.94 16 13 C -0.49 -26.02 8.31 25.60 0.21 -25.80 16 14 H 0.05 2.43 7.83 -2.91 -0.02 2.41 16 15 C 0.05 2.78 5.19 84.65 0.44 3.22 16 16 N -0.89 -49.76 10.69 21.45 0.23 -49.53 16 17 Si 0.94 42.98 29.55 68.60 2.03 45.01 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C -0.21 -9.74 9.96 30.62 0.30 -9.43 16 22 C -0.19 -8.13 8.16 30.62 0.25 -7.88 16 23 C 0.09 3.59 4.04 86.33 0.35 3.94 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.42 5.24 8.31 -92.71 -0.77 4.47 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.62 7.66 -2.38 -0.02 1.60 16 30 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 3.14 5.36 -2.39 -0.01 3.13 16 34 H -0.02 -1.00 8.09 -2.39 -0.02 -1.02 16 35 H 0.08 4.70 5.99 -2.39 -0.01 4.68 16 36 H 0.25 13.77 8.32 -92.70 -0.77 13.00 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.04 2.02 8.10 -2.38 -0.02 2.00 16 42 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 Total: -1.00 -66.64 330.44 0.40 -66.25 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.22 Total: 19.05 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.58 Total: -14.63 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -6.38 Total: -92.48 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -66.64 0.40 -66.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232285123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.596 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds