Wall clock time and date at job start Mon Mar 30 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00057 * 2 1 4 4 C 1.53002 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.53134 * 54.90096 * 4 3 2 6 6 C 1.53117 * 109.50023 * 294.80373 * 4 3 2 7 7 C 1.53117 * 109.15817 * 182.40395 * 6 4 3 8 8 C 1.53036 * 109.27896 * 57.65431 * 7 6 4 9 9 N 1.46844 * 109.52371 * 300.82116 * 8 7 6 10 10 C 1.46899 * 111.00071 * 185.84145 * 9 8 7 11 11 C 1.52997 * 109.47363 * 66.15920 * 10 9 8 12 12 H 1.09001 * 109.47180 * 303.65681 * 11 10 9 13 13 C 1.47204 * 109.47182 * 63.65670 * 11 10 9 14 14 N 7.53953 * 152.66972 * 307.89502 * 2 1 3 15 15 C 1.53002 * 109.47243 * 183.65872 * 11 10 9 16 16 C 1.50702 * 109.47190 * 175.00091 * 15 11 10 17 17 H 1.08002 * 119.99909 * 359.97438 * 16 15 11 18 18 C 1.37873 * 119.99964 * 180.02562 * 16 15 11 19 19 N 1.31517 * 120.00114 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46786 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47470 * 119.99671 * 20 18 16 23 23 H 1.48501 * 109.46688 * 240.00028 * 20 18 16 24 24 C 1.46845 * 111.20050 * 61.73959 * 9 8 7 25 25 H 1.08991 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46561 * 299.99849 * 1 2 3 27 27 H 1.09001 * 109.47298 * 59.99637 * 1 2 3 28 28 H 1.08999 * 109.47241 * 60.00190 * 3 2 1 29 29 H 1.09007 * 109.47045 * 300.00383 * 3 2 1 30 30 H 1.09003 * 109.52614 * 302.30637 * 6 4 3 31 31 H 1.08999 * 109.52663 * 62.43564 * 6 4 3 32 32 H 1.08998 * 109.50633 * 297.71231 * 7 6 4 33 33 H 1.09004 * 109.50535 * 177.59431 * 7 6 4 34 34 H 1.09007 * 109.45776 * 180.80354 * 8 7 6 35 35 H 1.08996 * 109.46242 * 60.83994 * 8 7 6 36 36 H 1.09000 * 109.47556 * 186.16208 * 10 9 8 37 37 H 1.09010 * 109.47058 * 306.16377 * 10 9 8 38 38 H 1.08996 * 109.46985 * 295.00180 * 15 11 10 39 39 H 1.09000 * 109.47299 * 55.00407 * 15 11 10 40 40 H 0.96998 * 119.99882 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.45921 * 58.27620 * 24 9 8 42 42 H 1.08994 * 109.46574 * 178.23893 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8518 0.5673 -0.8413 6 6 3.9978 0.5405 1.3092 7 6 5.5276 0.4783 1.3261 8 6 6.0926 1.8910 1.1620 9 7 5.6221 2.4634 -0.1058 10 6 6.2547 3.7640 -0.3631 11 6 7.7546 3.5656 -0.5906 12 1 8.1881 3.0552 0.2695 13 6 7.9642 2.7534 -1.8002 14 7 8.1270 2.1261 -2.7316 15 6 8.4282 4.9279 -0.7679 16 6 9.9201 4.7412 -0.8692 17 1 10.3454 3.7501 -0.8123 18 6 10.7422 5.8358 -1.0335 19 7 10.2244 7.0427 -1.1023 20 14 12.5916 5.6043 -1.1598 21 1 12.9179 4.1594 -1.0547 22 1 13.0678 6.1260 -2.4660 23 1 13.2592 6.3435 -0.0583 24 6 4.1582 2.5769 -0.1264 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6482 1.1371 2.1519 31 1 3.5904 -0.4678 1.3830 32 1 5.8754 -0.1503 0.5064 33 1 5.8644 0.0596 2.2746 34 1 7.1818 1.8484 1.1593 35 1 5.7558 2.5153 1.9895 36 1 5.8094 4.2157 -1.2496 37 1 6.1008 4.4189 0.4947 38 1 8.0585 5.4002 -1.6780 39 1 8.1986 5.5611 0.0891 40 1 10.8028 7.8127 -1.2182 41 1 3.8304 3.1981 0.7072 42 1 3.8424 3.0327 -1.0648 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247398596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:00 Heat of formation + Delta-G solvation = -39.575911 kcal Electronic energy + Delta-G solvation = -20243.610050 eV Core-core repulsion = 17222.908892 eV Total energy + Delta-G solvation = -3020.701158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.50069 -37.90612 -36.32729 -34.21071 -33.16315 -31.70895 -31.17521 -27.49887 -26.83145 -25.46385 -24.21893 -22.60181 -21.84047 -21.17445 -19.72827 -16.71664 -16.61308 -16.48147 -16.05053 -15.83840 -15.06373 -14.73469 -14.40008 -14.37754 -13.96295 -13.70639 -13.16598 -12.92693 -12.72655 -12.33332 -12.22743 -11.99695 -11.90240 -11.75874 -11.45892 -11.22539 -11.06585 -11.03216 -10.74245 -10.65839 -10.56972 -10.45274 -10.33798 -10.01126 -9.86840 -9.51931 -9.19299 -8.45647 -8.16145 -6.09355 -4.12234 3.28825 3.37088 3.41228 3.43672 3.79053 3.88529 4.10113 4.41945 4.62629 4.75416 4.86770 4.95406 5.01394 5.04937 5.17791 5.23017 5.28910 5.29700 5.34711 5.38081 5.42378 5.58485 5.59699 5.62716 5.78122 5.80503 5.93733 6.03061 6.05336 6.12062 6.24124 6.38396 6.41050 6.53488 6.92145 7.21316 7.23710 7.43366 7.53841 7.86363 8.23958 8.63082 8.92882 9.53314 11.01624 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039952 B = 0.003482 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.667584 B = 8039.197313 C = 8119.751421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.084 4.084 5 H 0.087 0.913 6 C -0.110 4.110 7 C -0.117 4.117 8 C 0.049 3.951 9 N -0.540 5.540 10 C 0.063 3.937 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.257 3.743 14 N -0.480 5.480 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.065 3.935 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.034 0.966 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.829 -9.266 7.298 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.103 4.103 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.078 4.078 9 N -0.264 5.264 10 C -0.065 4.065 11 C -0.012 4.012 12 H 0.118 0.882 13 C -0.060 4.060 14 N -0.157 5.157 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.063 4.063 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.285 -10.513 5.500 20.965 hybrid contribution 0.531 1.106 0.886 1.513 sum -16.754 -9.407 6.385 20.248 Atomic orbital electron populations 1.22722 0.81295 1.02610 0.99864 1.87882 1.19392 1.28091 1.95383 1.22549 0.93903 0.84494 1.00054 1.21151 0.91797 0.97377 0.99943 0.89454 1.21554 0.95779 1.01079 0.96303 1.21592 0.95159 0.96872 1.01893 1.22195 1.00887 0.95118 0.89624 1.61873 1.05323 1.25408 1.33829 1.22220 0.93807 0.88963 1.01508 1.19253 0.94480 0.97694 0.89780 0.88248 1.28761 0.91143 0.91972 0.94090 1.80919 1.10543 1.11942 1.12252 1.19175 0.95156 0.87785 0.98640 1.21182 0.91300 0.93263 1.50515 0.92447 1.24955 0.98894 0.95195 0.94963 1.69949 1.35275 0.98089 1.49770 0.86540 0.85483 0.78392 0.77707 1.19654 1.20963 1.20874 1.21945 0.88020 0.95327 1.01006 0.89756 0.94228 0.94152 0.93403 0.93221 0.92583 0.91356 0.91123 0.91595 0.89931 0.94715 0.90219 0.92873 0.95567 0.94496 0.92870 0.94743 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.13 10.30 -35.23 -0.36 -4.49 16 3 C 0.07 0.64 5.32 37.16 0.20 0.84 16 4 C -0.08 -0.91 2.59 -90.54 -0.23 -1.15 16 5 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -1.14 5.16 -26.61 -0.14 -1.28 16 7 C -0.12 -1.30 6.09 -26.65 -0.16 -1.47 16 8 C 0.05 0.61 5.30 -3.84 -0.02 0.59 16 9 N -0.54 -7.38 4.32 -234.67 -1.01 -8.39 16 10 C 0.06 0.95 4.34 -3.83 -0.02 0.93 16 11 C 0.01 0.18 2.12 -93.41 -0.20 -0.02 16 12 H 0.10 1.74 6.29 -51.93 -0.33 1.41 16 13 C 0.26 5.45 13.63 -20.80 -0.28 5.17 16 14 N -0.48 -11.06 18.53 42.10 0.78 -10.28 16 15 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 16 C -0.52 -14.00 8.60 -34.44 -0.30 -14.29 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.07 0.75 4.74 -3.84 -0.02 0.73 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.08 6.16 -51.92 -0.32 0.76 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 1.20 7.98 -51.93 -0.41 0.78 16 37 H 0.05 0.73 8.12 -51.92 -0.42 0.31 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -30.51 342.27 -7.34 -37.85 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -7.34 Total: -4.98 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.28 Total: -6.39 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.50 Total: -43.48 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.36 Total: -4.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.51 -7.34 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247398596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.728 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds