Wall clock time and date at job start Mon Mar 30 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99987 * 2 1 4 4 H 1.48494 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46887 * 300.00352 * 3 2 1 6 6 H 1.48502 * 109.47003 * 59.99693 * 3 2 1 7 7 C 1.37871 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00438 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53126 * 109.52193 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27603 * 182.37518 * 10 9 7 12 12 N 1.46852 * 109.52447 * 59.17702 * 11 10 9 13 13 C 1.46901 * 110.99899 * 174.15806 * 12 11 10 14 14 C 1.53000 * 109.46769 * 169.99926 * 13 12 11 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.46839 * 111.00222 * 294.21135 * 15 14 13 17 17 C 1.53034 * 109.52552 * 174.16216 * 16 15 14 18 18 C 1.53123 * 109.28182 * 59.17780 * 17 16 15 19 19 C 1.53120 * 109.16070 * 302.35293 * 18 17 16 20 20 C 1.46849 * 110.99649 * 169.99929 * 15 14 13 21 21 C 1.46849 * 111.19645 * 298.25820 * 12 11 10 22 22 C 1.53032 * 109.52573 * 61.74127 * 21 12 11 23 23 H 0.96996 * 120.00344 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.52089 * 300.12022 * 9 7 2 25 25 H 1.08999 * 109.50165 * 62.43415 * 10 9 7 26 26 H 1.08996 * 109.53138 * 302.33231 * 10 9 7 27 27 H 1.08998 * 109.46142 * 299.16245 * 11 10 9 28 28 H 1.08998 * 109.45246 * 179.18994 * 11 10 9 29 29 H 1.09001 * 109.46874 * 50.00206 * 13 12 11 30 30 H 1.08992 * 109.47407 * 290.00224 * 13 12 11 31 31 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 32 32 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 33 33 H 1.09006 * 109.46266 * 294.17473 * 16 15 14 34 34 H 1.09002 * 109.46276 * 54.14664 * 16 15 14 35 35 H 1.09006 * 109.50444 * 299.24199 * 17 16 15 36 36 H 1.09003 * 109.50687 * 179.12283 * 17 16 15 37 37 H 1.08993 * 109.52832 * 182.44067 * 18 17 16 38 38 H 1.09005 * 109.51783 * 62.25186 * 18 17 16 39 39 H 1.09005 * 109.50142 * 297.71204 * 19 18 17 40 40 H 1.08998 * 109.50777 * 177.59101 * 19 18 17 41 41 H 1.08991 * 109.46839 * 305.85721 * 20 15 14 42 42 H 1.09001 * 109.46094 * 65.83266 * 20 15 14 43 43 H 1.09000 * 109.45708 * 181.75875 * 21 12 11 44 44 H 1.09002 * 109.46385 * 301.72273 * 21 12 11 45 45 H 1.08996 * 109.50669 * 180.87260 * 22 21 12 46 46 H 1.09005 * 109.50103 * 60.75914 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0005 11 6 1.4753 -4.9851 -0.0593 12 7 0.6534 -5.0195 -1.2758 13 6 0.0071 -6.3288 -1.4376 14 6 -1.0265 -6.2517 -2.5631 15 7 -1.6732 -7.5608 -2.7244 16 6 -0.7129 -8.5679 -3.1931 17 6 -1.3824 -9.9440 -3.2103 18 6 -2.6002 -9.9022 -4.1377 19 6 -3.5617 -8.8124 -3.6558 20 6 -2.8290 -7.4691 -3.6256 21 6 -0.3404 -3.9384 -1.2759 22 6 0.3752 -2.5859 -1.2523 23 1 -0.4850 0.8400 -0.0004 24 1 0.6222 -2.5566 0.8889 25 1 2.8430 -3.6319 0.9114 26 1 2.8996 -3.5843 -0.8674 27 1 0.8318 -5.0705 0.8163 28 1 2.1807 -5.8159 -0.0740 29 1 -0.4887 -6.6066 -0.5074 30 1 0.7595 -7.0772 -1.6858 31 1 -1.7789 -5.5032 -2.3148 32 1 -0.5307 -5.9738 -3.4932 33 1 -0.3813 -8.3129 -4.1997 34 1 0.1462 -8.5904 -2.5226 35 1 -1.7021 -10.2058 -2.2016 36 1 -0.6741 -10.6889 -3.5731 37 1 -3.1053 -10.8678 -4.1195 38 1 -2.2763 -9.6787 -5.1543 39 1 -3.9156 -9.0563 -2.6541 40 1 -4.4104 -8.7487 -4.3368 41 1 -3.5069 -6.6936 -3.2693 42 1 -2.4874 -7.2193 -4.6301 43 1 -0.9538 -4.0092 -2.1741 44 1 -0.9754 -4.0287 -0.3946 45 1 -0.3628 -1.7839 -1.2368 46 1 0.9998 -2.4892 -2.1404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260494201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:59 Heat of formation + Delta-G solvation = -11.420519 kcal Electronic energy + Delta-G solvation = -20982.610273 eV Core-core repulsion = 18098.963119 eV Total energy + Delta-G solvation = -2883.647154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.30671 -38.04929 -34.67363 -33.19352 -31.32819 -30.96053 -29.79041 -28.00218 -25.53923 -23.92445 -23.16402 -22.40337 -21.71852 -20.17381 -19.81226 -18.54491 -16.52559 -16.20867 -15.31873 -15.04018 -14.61773 -14.59737 -14.30116 -13.98948 -13.95584 -13.37410 -13.05459 -13.02357 -12.55230 -12.48723 -12.19056 -12.14305 -11.46673 -11.39136 -11.34653 -10.97703 -10.92232 -10.78990 -10.68760 -10.46900 -10.36223 -10.30075 -10.16077 -9.92476 -9.37218 -8.91181 -8.63907 -8.35336 -8.26006 -7.67927 -5.93956 -3.99032 3.32318 3.40345 3.44643 3.74491 4.47810 4.56680 4.67086 4.68062 4.78777 5.01116 5.16591 5.29004 5.34414 5.36044 5.36781 5.46117 5.56969 5.67939 5.70909 5.75441 5.79240 5.82871 5.91665 5.93781 6.00802 6.04227 6.10500 6.20612 6.20731 6.30594 6.37092 6.65358 6.67931 6.90485 7.02090 7.05864 7.13176 7.22263 7.49260 7.67013 7.75351 7.88087 8.09415 8.20084 8.52400 9.04960 9.65193 11.12233 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043121 B = 0.003477 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.184396 B = 8051.364706 C = 8488.446539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.536 5.536 13 C 0.060 3.940 14 C 0.053 3.947 15 N -0.539 5.539 16 C 0.052 3.948 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.116 4.116 20 C 0.056 3.944 21 C 0.052 3.948 22 C -0.104 4.104 23 H 0.258 0.742 24 H 0.020 0.980 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.058 0.942 44 H 0.022 0.978 45 H 0.091 0.909 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 -17.771 -6.940 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.262 5.262 13 C -0.068 4.068 14 C -0.074 4.074 15 N -0.264 5.264 16 C -0.076 4.076 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.072 4.072 21 C -0.075 4.075 22 C -0.142 4.142 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.110 0.890 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.162 -17.712 -6.878 19.689 hybrid contribution 0.178 1.068 -0.122 1.089 sum -4.984 -16.645 -7.000 18.732 Atomic orbital electron populations 1.69886 1.05850 1.26126 1.51291 1.24971 0.94836 0.98990 0.95283 0.86586 0.80198 0.84039 0.77467 1.19846 1.21108 1.21167 1.21258 0.92910 0.90688 1.49819 0.92729 1.18689 0.92717 0.91736 0.93990 1.21675 0.98692 0.93784 1.00236 1.22096 0.95744 0.99173 0.89539 1.62075 1.23596 1.02042 1.38484 1.22023 0.95438 0.92278 0.97094 1.22262 0.96986 0.89828 0.98349 1.61889 1.08590 1.07217 1.48735 1.22146 0.95045 0.91835 0.98586 1.21592 0.97111 0.96265 1.00500 1.21580 0.96549 0.98788 0.98982 1.21583 0.97561 0.94386 1.01885 1.22063 0.92845 0.97897 0.94423 1.22370 0.93323 0.93133 0.98694 1.21660 1.00158 0.93083 0.99341 0.93204 0.96166 0.93218 0.92543 0.95772 0.92570 0.94722 0.91558 0.90149 0.94022 0.95042 0.90386 0.91155 0.91768 0.92017 0.92422 0.91120 0.91734 0.90746 0.95050 0.92322 0.95946 0.89040 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 11.37 55.43 0.63 -25.00 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.14 8.57 -34.44 -0.29 -14.44 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.19 2.16 -91.64 -0.20 0.99 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.16 5.42 -3.83 -0.02 1.14 16 12 N -0.54 -9.81 4.81 -234.67 -1.13 -10.94 16 13 C 0.06 0.91 5.20 -3.82 -0.02 0.89 16 14 C 0.05 0.74 4.21 -3.82 -0.02 0.72 16 15 N -0.54 -6.56 4.66 -234.67 -1.09 -7.65 16 16 C 0.05 0.56 5.29 -3.84 -0.02 0.54 16 17 C -0.12 -1.04 6.09 -26.65 -0.16 -1.21 16 18 C -0.12 -1.00 6.00 -26.61 -0.16 -1.16 16 19 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 20 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 21 C 0.05 1.04 4.85 -3.84 -0.02 1.02 16 22 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 29 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 31 H 0.08 1.17 6.05 -51.93 -0.31 0.86 16 32 H 0.04 0.61 8.12 -51.93 -0.42 0.18 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.86 6.21 -51.93 -0.32 0.53 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 1.07 5.81 -51.93 -0.30 0.77 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 46 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -28.28 339.86 -11.69 -39.97 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -8.73 Total: -2.38 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.47 Total: -15.60 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -1.59 Total: -43.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.28 -11.69 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260494201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.548 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds