Wall clock time and date at job start Mon Mar 30 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99987 * 2 1 4 4 H 1.48494 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46887 * 300.00352 * 3 2 1 6 6 H 1.48502 * 109.47003 * 59.99693 * 3 2 1 7 7 C 1.37871 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00438 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53126 * 109.52193 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27603 * 182.37518 * 10 9 7 12 12 N 1.46852 * 109.52447 * 59.17702 * 11 10 9 13 13 C 1.46901 * 110.99899 * 174.15806 * 12 11 10 14 14 C 1.53000 * 109.46769 * 169.99926 * 13 12 11 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.46839 * 111.00222 * 294.21135 * 15 14 13 17 17 C 1.53034 * 109.52552 * 174.16216 * 16 15 14 18 18 C 1.53123 * 109.28182 * 59.17780 * 17 16 15 19 19 C 1.53120 * 109.16070 * 302.35293 * 18 17 16 20 20 C 1.46849 * 110.99649 * 169.99929 * 15 14 13 21 21 C 1.46849 * 111.19645 * 298.25820 * 12 11 10 22 22 C 1.53032 * 109.52573 * 61.74127 * 21 12 11 23 23 H 0.96996 * 120.00344 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.52089 * 300.12022 * 9 7 2 25 25 H 1.08999 * 109.50165 * 62.43415 * 10 9 7 26 26 H 1.08996 * 109.53138 * 302.33231 * 10 9 7 27 27 H 1.08998 * 109.46142 * 299.16245 * 11 10 9 28 28 H 1.08998 * 109.45246 * 179.18994 * 11 10 9 29 29 H 1.09001 * 109.46874 * 50.00206 * 13 12 11 30 30 H 1.08992 * 109.47407 * 290.00224 * 13 12 11 31 31 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 32 32 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 33 33 H 1.09006 * 109.46266 * 294.17473 * 16 15 14 34 34 H 1.09002 * 109.46276 * 54.14664 * 16 15 14 35 35 H 1.09006 * 109.50444 * 299.24199 * 17 16 15 36 36 H 1.09003 * 109.50687 * 179.12283 * 17 16 15 37 37 H 1.08993 * 109.52832 * 182.44067 * 18 17 16 38 38 H 1.09005 * 109.51783 * 62.25186 * 18 17 16 39 39 H 1.09005 * 109.50142 * 297.71204 * 19 18 17 40 40 H 1.08998 * 109.50777 * 177.59101 * 19 18 17 41 41 H 1.08991 * 109.46839 * 305.85721 * 20 15 14 42 42 H 1.09001 * 109.46094 * 65.83266 * 20 15 14 43 43 H 1.09000 * 109.45708 * 181.75875 * 21 12 11 44 44 H 1.09002 * 109.46385 * 301.72273 * 21 12 11 45 45 H 1.08996 * 109.50669 * 180.87260 * 22 21 12 46 46 H 1.09005 * 109.50103 * 60.75914 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0005 11 6 1.4753 -4.9851 -0.0593 12 7 0.6534 -5.0195 -1.2758 13 6 0.0071 -6.3288 -1.4376 14 6 -1.0265 -6.2517 -2.5631 15 7 -1.6732 -7.5608 -2.7244 16 6 -0.7129 -8.5679 -3.1931 17 6 -1.3824 -9.9440 -3.2103 18 6 -2.6002 -9.9022 -4.1377 19 6 -3.5617 -8.8124 -3.6558 20 6 -2.8290 -7.4691 -3.6256 21 6 -0.3404 -3.9384 -1.2759 22 6 0.3752 -2.5859 -1.2523 23 1 -0.4850 0.8400 -0.0004 24 1 0.6222 -2.5566 0.8889 25 1 2.8430 -3.6319 0.9114 26 1 2.8996 -3.5843 -0.8674 27 1 0.8318 -5.0705 0.8163 28 1 2.1807 -5.8159 -0.0740 29 1 -0.4887 -6.6066 -0.5074 30 1 0.7595 -7.0772 -1.6858 31 1 -1.7789 -5.5032 -2.3148 32 1 -0.5307 -5.9738 -3.4932 33 1 -0.3813 -8.3129 -4.1997 34 1 0.1462 -8.5904 -2.5226 35 1 -1.7021 -10.2058 -2.2016 36 1 -0.6741 -10.6889 -3.5731 37 1 -3.1053 -10.8678 -4.1195 38 1 -2.2763 -9.6787 -5.1543 39 1 -3.9156 -9.0563 -2.6541 40 1 -4.4104 -8.7487 -4.3368 41 1 -3.5069 -6.6936 -3.2693 42 1 -2.4874 -7.2193 -4.6301 43 1 -0.9538 -4.0092 -2.1741 44 1 -0.9754 -4.0287 -0.3946 45 1 -0.3628 -1.7839 -1.2368 46 1 0.9998 -2.4892 -2.1404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260494201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:58 Heat of formation + Delta-G solvation = -28.309060 kcal Electronic energy + Delta-G solvation = -20983.342615 eV Core-core repulsion = 18098.963119 eV Total energy + Delta-G solvation = -2884.379496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39983 -39.41965 -36.17783 -34.60174 -33.00780 -31.78430 -31.50207 -29.39153 -27.22675 -25.18049 -24.11338 -23.79554 -23.32775 -21.49324 -20.59989 -20.33515 -18.45396 -17.48389 -16.60139 -16.32947 -16.20538 -15.69608 -15.43005 -15.21506 -15.03885 -14.75930 -14.45932 -14.26317 -14.11360 -13.93184 -13.65085 -13.05332 -13.02716 -12.83746 -12.81214 -12.53803 -12.15415 -12.08145 -12.05454 -11.98672 -11.85527 -11.56367 -11.36266 -11.24807 -11.10737 -10.79441 -10.60429 -10.36795 -9.30680 -9.17824 -8.07509 -6.20869 1.40010 1.41799 1.53355 2.44090 2.70705 3.18868 3.29075 3.80407 3.91103 4.02315 4.07853 4.18233 4.23435 4.30776 4.35775 4.42402 4.48987 4.54113 4.57962 4.63597 4.68767 4.74914 4.78891 4.87624 4.92764 4.95849 4.98176 5.02420 5.07206 5.10198 5.13607 5.24292 5.24593 5.30666 5.34560 5.49577 5.56666 5.63149 5.99035 6.01213 6.08287 6.16525 6.30452 6.35313 6.41518 6.90879 7.46852 8.97280 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043121 B = 0.003477 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.184396 B = 8051.364706 C = 8488.446539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.099 4.099 11 C 0.067 3.933 12 N -0.542 5.542 13 C 0.067 3.933 14 C 0.061 3.939 15 N -0.545 5.545 16 C 0.049 3.951 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.113 4.113 20 C 0.052 3.948 21 C 0.066 3.934 22 C -0.095 4.095 23 H 0.260 0.740 24 H -0.013 1.013 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.020 0.980 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.012 0.988 45 H 0.060 0.940 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 -19.363 -7.675 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.060 4.060 12 N -0.267 5.267 13 C -0.061 4.061 14 C -0.067 4.067 15 N -0.270 5.270 16 C -0.078 4.078 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.076 4.076 21 C -0.062 4.062 22 C -0.133 4.133 23 H 0.069 0.931 24 H 0.005 0.995 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.030 0.970 45 H 0.079 0.921 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.837 -19.325 -7.616 21.328 hybrid contribution 0.066 1.546 0.110 1.552 sum -4.771 -17.779 -7.506 19.880 Atomic orbital electron populations 1.70023 1.07143 1.26959 1.51648 1.25753 0.95701 1.02377 0.94905 0.85572 0.79103 0.79808 0.77561 1.19207 1.20597 1.20683 1.21615 0.92990 0.92239 1.50142 0.93096 1.18671 0.93186 0.92687 0.93013 1.21541 0.97959 0.93934 1.00253 1.22039 0.96033 0.98406 0.89563 1.62032 1.23381 1.03021 1.38273 1.22032 0.96054 0.90594 0.97422 1.22087 0.96334 0.90818 0.97465 1.61912 1.09111 1.06401 1.49609 1.22222 0.94924 0.92423 0.98274 1.21585 0.97650 0.95349 1.00557 1.21588 0.96166 0.99234 0.98775 1.21574 0.97983 0.93451 1.02058 1.22145 0.92384 0.99074 0.93960 1.22119 0.93183 0.91786 0.99090 1.21425 0.99157 0.94672 0.98094 0.93114 0.99489 0.92749 0.92965 0.96168 0.89419 0.94981 0.89862 0.91217 0.94685 0.95273 0.90566 0.91608 0.90237 0.90544 0.92245 0.91636 0.90275 0.91178 0.95144 0.90547 0.97023 0.92109 0.95104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 11.37 21.44 0.24 -53.76 16 2 C 0.01 0.61 5.31 84.65 0.45 1.06 16 3 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.53 -30.17 8.57 25.60 0.22 -29.95 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 10 C -0.10 -4.23 5.32 30.65 0.16 -4.07 16 11 C 0.07 2.41 5.42 86.32 0.47 2.88 16 12 N -0.54 -19.19 4.81 -896.37 -4.31 -23.50 16 13 C 0.07 1.91 5.20 86.30 0.45 2.36 16 14 C 0.06 1.62 4.21 86.30 0.36 1.99 16 15 N -0.54 -12.46 4.66 -896.37 -4.17 -16.63 16 16 C 0.05 0.96 5.29 86.33 0.46 1.42 16 17 C -0.11 -1.76 6.09 30.65 0.19 -1.57 16 18 C -0.12 -1.68 6.00 30.68 0.18 -1.49 16 19 C -0.11 -1.78 6.09 30.65 0.19 -1.59 16 20 C 0.05 1.04 5.46 86.33 0.47 1.51 16 21 C 0.07 2.64 4.85 86.32 0.42 3.06 16 22 C -0.10 -4.68 5.12 30.64 0.16 -4.52 16 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 2.63 8.12 -2.39 -0.02 2.61 16 29 H 0.03 0.95 8.08 -2.39 -0.02 0.93 16 30 H 0.08 2.14 6.43 -2.39 -0.02 2.12 16 31 H 0.07 1.99 6.05 -2.39 -0.01 1.98 16 32 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.08 1.50 6.21 -2.39 -0.01 1.49 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.44 8.01 -2.39 -0.02 1.42 16 42 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 2.78 5.81 -2.39 -0.01 2.76 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 3.35 6.17 -2.39 -0.01 3.34 16 46 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -61.07 339.86 -1.16 -62.22 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.91 Total: 11.88 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.15 Total: -26.71 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -8.24 Total: -93.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -61.07 -1.16 -62.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260494201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.916 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds