Wall clock time and date at job start Mon Mar 30 2020 00:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47246 * 2 1 4 4 C 1.46908 * 111.00031 * 287.97519 * 3 2 1 5 5 C 1.50702 * 109.46951 * 160.35813 * 4 3 2 6 6 H 1.08000 * 120.00281 * 4.66918 * 5 4 3 7 7 C 1.37873 * 119.99695 * 184.66230 * 5 4 3 8 8 N 1.31518 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46592 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47128 * 120.00231 * 9 7 5 12 12 H 1.48501 * 109.46563 * 240.00302 * 9 7 5 13 13 C 1.46897 * 111.00039 * 164.02193 * 3 2 1 14 14 C 1.50697 * 109.47388 * 293.95321 * 13 3 2 15 15 C 1.35349 * 126.75176 * 94.99671 * 14 13 3 16 16 N 1.35313 * 106.17655 * 180.02562 * 15 14 13 17 17 C 1.46498 * 125.87206 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.47110 * 74.99793 * 17 16 15 19 19 C 1.52991 * 109.47618 * 194.99898 * 17 16 15 20 20 C 1.53005 * 109.47066 * 315.00429 * 17 16 15 21 21 N 1.28717 * 108.26080 * 359.97438 * 16 15 14 22 22 N 1.28625 * 110.18300 * 0.02562 * 21 16 15 23 23 H 1.09001 * 109.46859 * 59.36457 * 1 2 3 24 24 H 1.09005 * 109.47300 * 179.36348 * 1 2 3 25 25 H 1.08999 * 109.47692 * 299.36906 * 1 2 3 26 26 H 1.09000 * 109.47441 * 239.99418 * 2 1 3 27 27 H 1.09008 * 109.47026 * 119.99612 * 2 1 3 28 28 H 1.08994 * 109.46955 * 280.36359 * 4 3 2 29 29 H 1.08998 * 109.46591 * 40.35839 * 4 3 2 30 30 H 0.96997 * 120.00213 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47351 * 173.95135 * 13 3 2 32 32 H 1.08999 * 109.47142 * 53.95320 * 13 3 2 33 33 H 1.08002 * 126.91079 * 0.02710 * 15 14 13 34 34 H 1.09007 * 109.46677 * 60.00121 * 18 17 16 35 35 H 1.08998 * 109.47377 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47156 * 300.00340 * 18 17 16 37 37 H 1.09004 * 109.47146 * 59.99918 * 19 17 16 38 38 H 1.09000 * 109.47924 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.47473 * 300.00679 * 19 17 16 40 40 H 1.08998 * 109.47374 * 59.99553 * 20 17 16 41 41 H 1.08998 * 109.46748 * 179.97438 * 20 17 16 42 42 H 1.09004 * 109.46638 * 299.99433 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7961 2.0224 -1.3046 5 6 1.8474 3.5203 -1.1471 6 1 2.1023 3.9544 -0.1916 7 6 1.5689 4.3364 -2.2228 8 7 1.2581 3.8078 -3.3863 9 14 1.6331 6.1932 -2.0279 10 1 2.0038 6.5315 -0.6303 11 1 2.6452 6.7539 -2.9586 12 1 0.3006 6.7699 -2.3395 13 6 3.4382 1.4418 0.3775 14 6 3.5942 1.0064 1.8118 15 6 3.8986 -0.2367 2.2522 16 7 3.9324 -0.1603 3.6028 17 6 4.2238 -1.2664 4.5181 18 6 5.7239 -1.5669 4.4938 19 6 3.8045 -0.8780 5.9373 20 6 3.4475 -2.5097 4.0791 21 7 3.6657 1.0515 3.9450 22 7 3.4589 1.7725 2.9001 23 1 -0.3633 0.5237 -0.8842 24 1 -0.3634 -1.0276 -0.0114 25 1 -0.3634 0.5040 0.8955 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.5706 1.7036 -2.0021 29 1 0.8187 1.7306 -1.6887 30 1 1.0625 4.3819 -4.1432 31 1 3.8032 2.4627 0.2660 32 1 4.0129 0.7779 -0.2683 33 1 4.0783 -1.1132 1.6474 34 1 6.2769 -0.6811 4.8065 35 1 5.9406 -2.3902 5.1744 36 1 6.0226 -1.8436 3.4827 37 1 2.7359 -0.6640 5.9547 38 1 4.0209 -1.7012 6.6183 39 1 4.3575 0.0077 6.2500 40 1 3.7463 -2.7864 3.0681 41 1 3.6647 -3.3327 4.7599 42 1 2.3789 -2.2956 4.0965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276802485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:36 Heat of formation + Delta-G solvation = 95.171920 kcal Electronic energy + Delta-G solvation = -20794.698565 eV Core-core repulsion = 17812.133263 eV Total energy + Delta-G solvation = -2982.565302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.02417 -37.66501 -36.79137 -32.62480 -31.95429 -31.31046 -29.86752 -27.98094 -27.88073 -26.85411 -24.74347 -23.51084 -22.50142 -21.09140 -20.20152 -19.11661 -17.04191 -16.43995 -16.14249 -14.94783 -14.78373 -14.65139 -14.37984 -14.17667 -13.86808 -13.52284 -13.22839 -12.90230 -12.81601 -12.62287 -12.20067 -12.14159 -11.75988 -11.72051 -11.62704 -11.34829 -11.18148 -11.00526 -10.91969 -10.73887 -10.51888 -10.31238 -10.17719 -9.79937 -9.56955 -9.17701 -8.78316 -8.32822 -7.17318 -5.93298 -3.93128 1.86305 2.40256 2.95614 3.39599 3.46883 3.55241 4.06626 4.29940 4.40255 4.53369 4.65173 5.01069 5.04783 5.09532 5.16860 5.21668 5.25868 5.32252 5.38591 5.43123 5.48347 5.58470 5.69724 5.72335 5.75077 5.88603 6.00273 6.12295 6.28503 6.36099 6.41892 6.61168 6.71829 6.86437 6.86815 7.29918 7.38536 7.94171 8.19413 8.27172 8.63308 8.91866 9.16587 9.71045 11.17377 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.004460 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.480787 B = 6276.487743 C = 6798.844096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.500 4.500 6 H 0.066 0.934 7 C 0.054 3.946 8 N -0.903 5.903 9 Si 0.895 3.105 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.143 3.857 14 C 0.012 3.988 15 C -0.060 4.060 16 N -0.289 5.289 17 C 0.165 3.835 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.159 4.159 21 N -0.094 5.094 22 N -0.250 5.250 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.054 0.946 28 H -0.010 1.010 29 H 0.039 0.961 30 H 0.259 0.741 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.179 0.821 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.009 -16.128 14.509 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 N -0.253 5.253 4 C 0.067 3.933 5 C -0.539 4.539 6 H 0.085 0.915 7 C -0.146 4.146 8 N -0.543 5.543 9 Si 0.723 3.277 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.013 3.987 14 C -0.127 4.127 15 C -0.211 4.211 16 N -0.084 5.084 17 C 0.082 3.918 18 C -0.217 4.217 19 C -0.206 4.206 20 C -0.218 4.218 21 N -0.073 5.073 22 N -0.116 5.116 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.007 0.993 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.055 0.945 33 H 0.197 0.803 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.508 -14.835 15.879 22.684 hybrid contribution 0.571 -0.380 -1.533 1.679 sum 7.079 -15.215 14.346 22.077 Atomic orbital electron populations 1.21727 0.95596 0.99704 1.02950 1.22014 0.96060 0.91092 0.98684 1.62082 1.14615 1.14171 1.34411 1.19808 0.96547 0.94385 0.82530 1.21275 1.45506 0.90621 0.96482 0.91535 1.24968 0.95560 0.98897 0.95208 1.69968 1.48246 1.35050 1.01028 0.86474 0.77444 0.85505 0.78277 1.19462 1.21238 1.21156 1.20224 0.90835 1.02273 0.85365 1.22175 1.03168 0.89950 0.97385 1.23195 1.11811 1.01506 0.84540 1.47535 1.45696 1.09289 1.05885 1.21038 0.96826 0.84012 0.89914 1.22239 0.92736 1.03162 1.03530 1.21978 1.03280 1.02907 0.92409 1.22239 1.01019 0.95686 1.02818 1.78241 1.18217 0.88381 1.22435 1.75131 1.15734 1.25546 0.95227 0.91891 0.93866 0.92583 0.96073 0.92711 0.99262 0.94344 0.93142 0.88231 0.94494 0.80343 0.91321 0.89964 0.91445 0.91217 0.90485 0.90610 0.91248 0.89804 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.99 37.16 0.37 -2.16 16 2 C 0.05 0.93 5.55 -3.83 -0.02 0.90 16 3 N -0.53 -11.72 4.37 -237.52 -1.04 -12.76 16 4 C 0.19 5.03 4.59 -4.97 -0.02 5.00 16 5 C -0.50 -14.40 8.61 -34.44 -0.30 -14.70 16 6 H 0.07 1.96 7.66 -52.49 -0.40 1.56 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.14 2.87 5.35 -4.98 -0.03 2.84 16 14 C 0.01 0.22 6.03 -82.78 -0.50 -0.28 16 15 C -0.06 -0.85 9.25 -17.05 -0.16 -1.01 16 16 N -0.29 -3.90 3.18 -48.55 -0.15 -4.06 16 17 C 0.17 1.46 1.23 -131.82 -0.16 1.30 16 18 C -0.16 -1.11 8.72 37.16 0.32 -0.79 16 19 C -0.15 -1.21 8.05 37.15 0.30 -0.92 16 20 C -0.16 -1.09 8.29 37.16 0.31 -0.79 16 21 N -0.09 -1.63 12.18 60.35 0.74 -0.90 16 22 N -0.25 -5.06 12.41 33.29 0.41 -4.65 16 23 H 0.06 1.24 6.52 -51.93 -0.34 0.91 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 27 H 0.05 0.91 5.85 -51.92 -0.30 0.60 16 28 H -0.01 -0.28 8.00 -51.93 -0.42 -0.70 16 29 H 0.04 1.07 6.24 -51.93 -0.32 0.75 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.10 2.22 7.32 -51.93 -0.38 1.84 16 32 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.18 1.93 7.59 -52.49 -0.40 1.53 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 40 H 0.07 0.45 7.39 -51.93 -0.38 0.07 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -33.36 339.76 -6.33 -39.69 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -7.14 Total: -4.31 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 0.02 Total: -9.12 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.69 Total: -48.73 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.36 -6.33 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276802485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.862 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds