Wall clock time and date at job start Mon Mar 30 2020 00:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47246 * 2 1 4 4 C 1.46908 * 111.00031 * 287.97519 * 3 2 1 5 5 C 1.50702 * 109.46951 * 160.35813 * 4 3 2 6 6 H 1.08000 * 120.00281 * 4.66918 * 5 4 3 7 7 C 1.37873 * 119.99695 * 184.66230 * 5 4 3 8 8 N 1.31518 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46592 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47128 * 120.00231 * 9 7 5 12 12 H 1.48501 * 109.46563 * 240.00302 * 9 7 5 13 13 C 1.46897 * 111.00039 * 164.02193 * 3 2 1 14 14 C 1.50697 * 109.47388 * 293.95321 * 13 3 2 15 15 C 1.35349 * 126.75176 * 94.99671 * 14 13 3 16 16 N 1.35313 * 106.17655 * 180.02562 * 15 14 13 17 17 C 1.46498 * 125.87206 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.47110 * 74.99793 * 17 16 15 19 19 C 1.52991 * 109.47618 * 194.99898 * 17 16 15 20 20 C 1.53005 * 109.47066 * 315.00429 * 17 16 15 21 21 N 1.28717 * 108.26080 * 359.97438 * 16 15 14 22 22 N 1.28625 * 110.18300 * 0.02562 * 21 16 15 23 23 H 1.09001 * 109.46859 * 59.36457 * 1 2 3 24 24 H 1.09005 * 109.47300 * 179.36348 * 1 2 3 25 25 H 1.08999 * 109.47692 * 299.36906 * 1 2 3 26 26 H 1.09000 * 109.47441 * 239.99418 * 2 1 3 27 27 H 1.09008 * 109.47026 * 119.99612 * 2 1 3 28 28 H 1.08994 * 109.46955 * 280.36359 * 4 3 2 29 29 H 1.08998 * 109.46591 * 40.35839 * 4 3 2 30 30 H 0.96997 * 120.00213 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47351 * 173.95135 * 13 3 2 32 32 H 1.08999 * 109.47142 * 53.95320 * 13 3 2 33 33 H 1.08002 * 126.91079 * 0.02710 * 15 14 13 34 34 H 1.09007 * 109.46677 * 60.00121 * 18 17 16 35 35 H 1.08998 * 109.47377 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47156 * 300.00340 * 18 17 16 37 37 H 1.09004 * 109.47146 * 59.99918 * 19 17 16 38 38 H 1.09000 * 109.47924 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.47473 * 300.00679 * 19 17 16 40 40 H 1.08998 * 109.47374 * 59.99553 * 20 17 16 41 41 H 1.08998 * 109.46748 * 179.97438 * 20 17 16 42 42 H 1.09004 * 109.46638 * 299.99433 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7961 2.0224 -1.3046 5 6 1.8474 3.5203 -1.1471 6 1 2.1023 3.9544 -0.1916 7 6 1.5689 4.3364 -2.2228 8 7 1.2581 3.8078 -3.3863 9 14 1.6331 6.1932 -2.0279 10 1 2.0038 6.5315 -0.6303 11 1 2.6452 6.7539 -2.9586 12 1 0.3006 6.7699 -2.3395 13 6 3.4382 1.4418 0.3775 14 6 3.5942 1.0064 1.8118 15 6 3.8986 -0.2367 2.2522 16 7 3.9324 -0.1603 3.6028 17 6 4.2238 -1.2664 4.5181 18 6 5.7239 -1.5669 4.4938 19 6 3.8045 -0.8780 5.9373 20 6 3.4475 -2.5097 4.0791 21 7 3.6657 1.0515 3.9450 22 7 3.4589 1.7725 2.9001 23 1 -0.3633 0.5237 -0.8842 24 1 -0.3634 -1.0276 -0.0114 25 1 -0.3634 0.5040 0.8955 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.5706 1.7036 -2.0021 29 1 0.8187 1.7306 -1.6887 30 1 1.0625 4.3819 -4.1432 31 1 3.8032 2.4627 0.2660 32 1 4.0129 0.7779 -0.2683 33 1 4.0783 -1.1132 1.6474 34 1 6.2769 -0.6811 4.8065 35 1 5.9406 -2.3902 5.1744 36 1 6.0226 -1.8436 3.4827 37 1 2.7359 -0.6640 5.9547 38 1 4.0209 -1.7012 6.6183 39 1 4.3575 0.0077 6.2500 40 1 3.7463 -2.7864 3.0681 41 1 3.6647 -3.3327 4.7599 42 1 2.3789 -2.2956 4.0965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276802485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:36 Heat of formation + Delta-G solvation = 72.055205 kcal Electronic energy + Delta-G solvation = -20795.700981 eV Core-core repulsion = 17812.133263 eV Total energy + Delta-G solvation = -2983.567718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.23985 -38.84561 -38.11069 -34.77815 -33.23147 -32.52480 -31.46835 -29.21213 -28.40332 -28.22289 -26.37051 -24.68616 -24.29728 -22.42872 -21.64418 -20.34072 -18.54636 -17.91350 -17.38721 -16.73463 -16.35880 -15.78424 -15.69969 -15.27725 -15.08150 -14.90320 -14.56475 -14.14575 -13.77979 -13.43021 -13.31913 -13.22373 -13.05770 -12.87848 -12.82748 -12.76386 -12.57786 -12.44608 -12.39383 -12.26359 -12.09297 -11.99080 -11.66067 -11.47810 -11.25585 -10.88544 -10.56251 -10.10822 -8.93219 -8.16371 -6.24407 0.70827 1.40128 1.41302 1.46878 1.55444 1.57905 2.43586 3.14555 3.29060 3.47388 3.52741 3.68148 3.79693 3.98589 4.14319 4.23047 4.40646 4.46615 4.59153 4.60255 4.68184 4.68417 4.71278 4.75144 4.77323 4.80576 4.92825 4.98919 5.05540 5.08075 5.16175 5.21022 5.28003 5.30196 5.35638 5.40092 5.71903 5.83872 6.13813 6.42241 6.69991 6.91158 7.44452 7.64206 8.93737 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.004460 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.480787 B = 6276.487743 C = 6798.844096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 N -0.544 5.544 4 C 0.209 3.791 5 C -0.518 4.518 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.277 1.277 13 C 0.150 3.850 14 C -0.016 4.016 15 C -0.033 4.033 16 N -0.273 5.273 17 C 0.151 3.849 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.157 4.157 21 N -0.112 5.112 22 N -0.304 5.304 23 H 0.034 0.966 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.030 0.970 27 H 0.080 0.920 28 H -0.030 1.030 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.221 0.779 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 -18.654 15.676 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 N -0.269 5.269 4 C 0.084 3.916 5 C -0.556 4.556 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.203 1.203 13 C 0.020 3.980 14 C -0.156 4.156 15 C -0.185 4.185 16 N -0.069 5.069 17 C 0.070 3.930 18 C -0.213 4.213 19 C -0.205 4.205 20 C -0.214 4.214 21 N -0.091 5.091 22 N -0.169 5.169 23 H 0.054 0.946 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.098 0.902 28 H -0.012 1.012 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.135 0.865 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.312 -17.376 17.087 25.443 hybrid contribution 0.359 0.275 -1.801 1.857 sum 7.671 -17.100 15.286 24.185 Atomic orbital electron populations 1.21697 0.95269 1.01589 1.00932 1.22111 0.96323 0.89100 1.00197 1.61954 1.16478 1.16709 1.31810 1.19413 0.94599 0.93470 0.84163 1.21494 1.45776 0.92395 0.95980 0.93097 1.25757 0.95009 1.03506 0.94828 1.70060 1.48739 1.36774 1.01691 0.85466 0.77904 0.79948 0.78115 1.19718 1.20021 1.20273 1.20017 0.89662 1.00888 0.87398 1.21949 1.05904 0.91673 0.96051 1.23581 1.08909 1.01044 0.84952 1.48058 1.43116 1.09201 1.06498 1.21667 0.98754 0.83284 0.89280 1.22266 0.90587 1.03622 1.04776 1.22018 1.01854 1.03685 0.92946 1.22290 0.99663 0.95187 1.04308 1.78144 1.19252 0.89896 1.21776 1.75063 1.17800 1.27647 0.96421 0.94649 0.89988 0.93776 0.95146 0.90177 1.01240 0.96430 0.92720 0.91811 0.92418 0.76252 0.93030 0.86571 0.90909 0.92904 0.86824 0.92340 0.90261 0.86535 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.99 71.98 0.72 -4.08 16 2 C 0.05 1.81 5.55 86.30 0.48 2.29 16 3 N -0.54 -24.68 4.37 -905.37 -3.96 -28.64 16 4 C 0.21 11.39 4.59 85.56 0.39 11.79 16 5 C -0.52 -30.96 8.61 25.60 0.22 -30.74 16 6 H 0.05 3.14 7.66 -2.91 -0.02 3.12 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 9 Si 0.96 46.77 29.54 68.60 2.03 48.80 16 10 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.15 6.14 5.35 85.56 0.46 6.60 16 14 C -0.02 -0.59 6.03 41.59 0.25 -0.34 16 15 C -0.03 -0.85 9.25 83.49 0.77 -0.08 16 16 N -0.27 -6.91 3.18 -307.52 -0.98 -7.89 16 17 C 0.15 2.21 1.23 3.60 0.00 2.22 16 18 C -0.15 -1.60 8.72 71.98 0.63 -0.97 16 19 C -0.15 -2.10 8.05 71.98 0.58 -1.52 16 20 C -0.16 -1.47 8.29 71.98 0.60 -0.87 16 21 N -0.11 -3.90 12.18 37.02 0.45 -3.45 16 22 N -0.30 -12.62 12.41 -48.60 -0.60 -13.22 16 23 H 0.03 1.41 6.52 -2.39 -0.02 1.40 16 24 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.03 1.04 8.05 -2.39 -0.02 1.03 16 27 H 0.08 2.46 5.85 -2.38 -0.01 2.44 16 28 H -0.03 -1.71 8.00 -2.39 -0.02 -1.73 16 29 H 0.02 1.02 6.24 -2.39 -0.01 1.01 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.06 3.01 7.32 -2.39 -0.02 3.00 16 32 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 33 H 0.22 3.72 7.59 -2.91 -0.02 3.70 16 34 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 1.04 8.03 -2.39 -0.02 1.02 16 40 H 0.08 0.62 7.39 -2.39 -0.02 0.60 16 41 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.41 339.76 3.76 -72.65 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 0.97 Total: 3.26 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.56 Total: -14.85 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.80 Total: -109.86 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.41 3.76 -72.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276802485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.703 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds