Wall clock time and date at job start Mon Mar 30 2020 00:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47783 * 2 1 4 4 C 1.46906 * 110.99855 * 300.97038 * 3 2 1 5 5 C 1.50696 * 109.46988 * 289.10151 * 4 3 2 6 6 H 1.08008 * 120.00210 * 4.73565 * 5 4 3 7 7 C 1.37872 * 120.00056 * 184.73731 * 5 4 3 8 8 N 1.31525 * 120.00118 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00101 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47418 * 89.99911 * 9 7 5 11 11 H 1.48499 * 109.47227 * 210.00041 * 9 7 5 12 12 H 1.48502 * 109.46813 * 329.99511 * 9 7 5 13 13 C 1.46903 * 110.99813 * 64.91895 * 3 2 1 14 14 C 1.50698 * 109.47129 * 70.69462 * 13 3 2 15 15 N 1.30830 * 125.96329 * 275.57719 * 14 13 3 16 16 C 1.33238 * 109.82768 * 180.02562 * 15 14 13 17 17 N 1.30703 * 108.94875 * 359.97438 * 16 15 14 18 18 N 1.34429 * 125.96112 * 95.59827 * 14 13 3 19 19 C 1.46504 * 126.82116 * 359.97438 * 18 14 13 20 20 C 1.52999 * 109.47001 * 66.26154 * 19 18 14 21 21 C 1.52998 * 109.46986 * 186.26204 * 19 18 14 22 22 C 1.52993 * 109.47390 * 306.26209 * 19 18 14 23 23 H 1.09005 * 109.46566 * 306.20167 * 1 2 3 24 24 H 1.08997 * 109.47034 * 66.20090 * 1 2 3 25 25 H 1.08998 * 109.47660 * 186.20199 * 1 2 3 26 26 H 1.09005 * 109.47069 * 239.99506 * 2 1 3 27 27 H 1.09005 * 109.47528 * 120.00326 * 2 1 3 28 28 H 1.09004 * 109.46995 * 49.10017 * 4 3 2 29 29 H 1.09004 * 109.47203 * 169.10060 * 4 3 2 30 30 H 0.96995 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47327 * 310.69385 * 13 3 2 32 32 H 1.08993 * 109.46973 * 190.69725 * 13 3 2 33 33 H 1.08013 * 125.52188 * 179.73502 * 16 15 14 34 34 H 1.08999 * 109.47074 * 65.15898 * 20 19 18 35 35 H 1.08997 * 109.47017 * 185.15214 * 20 19 18 36 36 H 1.09001 * 109.47215 * 305.15696 * 20 19 18 37 37 H 1.08996 * 109.47706 * 60.00105 * 21 19 18 38 38 H 1.09003 * 109.47463 * 180.02562 * 21 19 18 39 39 H 1.09004 * 109.47301 * 300.00004 * 21 19 18 40 40 H 1.09005 * 109.47247 * 66.66867 * 22 19 18 41 41 H 1.08999 * 109.47410 * 186.66822 * 22 19 18 42 42 H 1.09004 * 109.47537 * 306.67010 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5299 2.1165 -1.1760 5 6 2.2222 1.6022 -2.4118 6 1 2.8955 0.7605 -2.3429 7 6 1.9960 2.2061 -3.6304 8 7 2.6006 1.7576 -4.7089 9 14 0.8322 3.6623 -3.7495 10 1 1.5925 4.9216 -3.5466 11 1 0.1959 3.6790 -5.0912 12 1 -0.2172 3.5439 -2.7055 13 6 1.6472 2.0750 1.2422 14 6 2.4513 1.5164 2.3878 15 7 2.1587 0.4470 3.0823 16 6 3.0870 0.2473 4.0170 17 7 3.9874 1.1907 3.9295 18 7 3.5941 2.0303 2.8746 19 6 4.2911 3.2279 2.3989 20 6 3.4307 4.4624 2.6759 21 6 5.6283 3.3638 3.1298 22 6 4.5420 3.1083 0.8945 23 1 -0.3632 0.6070 0.8293 24 1 -0.3633 0.4147 -0.9403 25 1 -0.3634 -1.0216 0.1110 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.4544 1.9687 -1.2738 29 1 1.7413 3.1792 -1.0568 30 1 2.4418 2.1827 -5.5662 31 1 0.5852 1.9253 1.4366 32 1 1.8511 3.1409 1.1408 33 1 3.0923 -0.5609 4.7336 34 1 3.3283 4.5998 3.7523 35 1 3.9062 5.3416 2.2411 36 1 2.4449 4.3254 2.2316 37 1 6.2413 2.4843 2.9325 38 1 6.1468 4.2551 2.7762 39 1 5.4496 3.4490 4.2017 40 1 3.5898 3.1307 0.3644 41 1 5.1624 3.9406 0.5622 42 1 5.0525 2.1683 0.6848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282970671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:42 Heat of formation + Delta-G solvation = 98.690137 kcal Electronic energy + Delta-G solvation = -21730.648335 eV Core-core repulsion = 18748.235594 eV Total energy + Delta-G solvation = -2982.412741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95865 -37.58885 -36.96010 -32.69483 -31.56404 -30.94611 -29.67780 -28.06450 -27.51208 -27.18603 -25.22661 -23.08672 -22.50012 -20.90946 -19.77602 -18.85056 -16.82225 -16.34062 -15.75229 -15.54153 -14.90036 -14.48479 -14.40654 -13.92086 -13.79963 -13.56924 -12.96307 -12.67996 -12.47079 -12.43485 -12.14723 -12.10464 -11.82292 -11.74291 -11.68149 -11.42354 -11.23431 -11.05640 -10.69506 -10.54947 -10.48874 -10.04211 -9.98066 -9.63897 -9.41818 -9.36884 -9.22726 -8.60909 -7.47763 -6.09095 -4.06464 1.89001 2.48389 3.20665 3.22841 3.31567 3.32057 4.34733 4.36638 4.47097 4.71767 4.86103 4.87470 4.98643 5.06950 5.23880 5.40540 5.49214 5.60403 5.66343 5.74311 5.76161 5.82672 5.90725 5.92879 5.97099 6.06934 6.12218 6.20754 6.39810 6.51436 6.53999 6.68213 6.72924 6.79569 6.89816 7.02586 7.11456 7.50484 7.79021 7.90553 8.41705 8.59056 9.00701 9.51742 11.04027 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.006631 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.909184 B = 4221.398834 C = 4935.107167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 N -0.516 5.516 4 C 0.159 3.841 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.112 3.888 14 C 0.306 3.694 15 N -0.546 5.546 16 C 0.188 3.812 17 N -0.329 5.329 18 N -0.357 5.357 19 C 0.176 3.824 20 C -0.163 4.163 21 C -0.139 4.139 22 C -0.163 4.163 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.001 0.999 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 4.074 14.841 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.071 4.071 3 N -0.240 5.240 4 C 0.033 3.967 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.019 4.019 14 C 0.029 3.971 15 N -0.275 5.275 16 C -0.115 4.115 17 N -0.157 5.157 18 N -0.148 5.148 19 C 0.093 3.907 20 C -0.221 4.221 21 C -0.196 4.196 22 C -0.221 4.221 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.019 0.981 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.564 4.019 15.007 15.615 hybrid contribution -1.455 0.833 -0.254 1.695 sum 0.109 4.852 14.754 15.531 Atomic orbital electron populations 1.22317 0.99056 1.01261 1.01569 1.22074 0.92428 0.90044 1.02555 1.62244 1.59305 1.02599 0.99854 1.20289 0.94636 0.93252 0.88495 1.20935 1.26821 1.17107 0.89361 0.90148 1.24871 0.95671 0.96938 0.95708 1.69888 1.43104 1.41578 0.99184 0.86935 0.81887 0.83667 0.77710 1.20183 1.21202 1.19238 1.20821 0.96001 0.97975 0.87068 1.24214 0.86861 0.90518 0.95483 1.70471 1.30131 1.17025 1.09857 1.25816 0.89288 0.98350 0.98019 1.77892 1.24101 1.05916 1.07748 1.50570 1.18348 1.21575 1.24307 1.20895 0.92815 0.80994 0.96036 1.22354 1.00491 0.96745 1.02519 1.21885 0.94511 1.02712 1.00538 1.22393 1.05303 1.03269 0.91152 0.93388 0.91905 0.92987 0.89858 0.91257 0.98126 0.96106 0.92646 0.91526 0.89145 0.77345 0.91954 0.89920 0.91445 0.91521 0.91008 0.91723 0.88934 0.90869 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 9.22 37.16 0.34 -2.83 16 2 C 0.06 1.09 5.77 -3.83 -0.02 1.07 16 3 N -0.52 -10.06 3.77 -237.51 -0.89 -10.96 16 4 C 0.16 3.52 3.31 -4.97 -0.02 3.50 16 5 C -0.50 -13.48 9.22 -34.44 -0.32 -13.79 16 6 H 0.08 2.39 7.51 -52.48 -0.39 2.00 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 9 Si 0.87 20.40 27.38 -169.99 -4.65 15.75 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -5.98 6.68 56.52 0.38 -5.61 16 13 C 0.11 1.86 4.09 -4.98 -0.02 1.84 16 14 C 0.31 5.11 6.43 -155.70 -1.00 4.11 16 15 N -0.55 -9.24 10.12 -11.97 -0.12 -9.36 16 16 C 0.19 2.81 13.03 -91.82 -1.20 1.62 16 17 N -0.33 -5.20 11.82 29.29 0.35 -4.86 16 18 N -0.36 -5.57 3.47 -45.71 -0.16 -5.73 16 19 C 0.18 2.31 1.06 -131.82 -0.14 2.17 16 20 C -0.16 -1.78 8.56 37.16 0.32 -1.46 16 21 C -0.14 -1.59 8.05 37.16 0.30 -1.29 16 22 C -0.16 -2.38 8.24 37.15 0.31 -2.08 16 23 H 0.05 0.78 6.07 -51.93 -0.32 0.47 16 24 H 0.06 1.18 6.50 -51.93 -0.34 0.84 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.77 7.13 -51.93 -0.37 1.40 16 27 H 0.07 1.32 6.50 -51.93 -0.34 0.98 16 28 H 0.00 0.03 5.28 -51.93 -0.27 -0.25 16 29 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 1.08 5.91 -51.93 -0.31 0.77 16 32 H 0.09 1.37 4.01 -51.93 -0.21 1.16 16 33 H 0.21 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.77 5.60 -51.93 -0.29 0.48 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.54 4.36 -51.93 -0.23 1.31 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -30.38 320.94 -7.79 -38.17 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.37 Total: 3.34 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.54 Total: -5.31 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.05 Total: -56.78 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.65 Total: 15.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.38 -7.79 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282970671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.857 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds