Wall clock time and date at job start Mon Mar 30 2020 00:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47783 * 2 1 4 4 C 1.46906 * 110.99855 * 300.97038 * 3 2 1 5 5 C 1.50696 * 109.46988 * 289.10151 * 4 3 2 6 6 H 1.08008 * 120.00210 * 4.73565 * 5 4 3 7 7 C 1.37872 * 120.00056 * 184.73731 * 5 4 3 8 8 N 1.31525 * 120.00118 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00101 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47418 * 89.99911 * 9 7 5 11 11 H 1.48499 * 109.47227 * 210.00041 * 9 7 5 12 12 H 1.48502 * 109.46813 * 329.99511 * 9 7 5 13 13 C 1.46903 * 110.99813 * 64.91895 * 3 2 1 14 14 C 1.50698 * 109.47129 * 70.69462 * 13 3 2 15 15 N 1.30830 * 125.96329 * 275.57719 * 14 13 3 16 16 C 1.33238 * 109.82768 * 180.02562 * 15 14 13 17 17 N 1.30703 * 108.94875 * 359.97438 * 16 15 14 18 18 N 1.34429 * 125.96112 * 95.59827 * 14 13 3 19 19 C 1.46504 * 126.82116 * 359.97438 * 18 14 13 20 20 C 1.52999 * 109.47001 * 66.26154 * 19 18 14 21 21 C 1.52998 * 109.46986 * 186.26204 * 19 18 14 22 22 C 1.52993 * 109.47390 * 306.26209 * 19 18 14 23 23 H 1.09005 * 109.46566 * 306.20167 * 1 2 3 24 24 H 1.08997 * 109.47034 * 66.20090 * 1 2 3 25 25 H 1.08998 * 109.47660 * 186.20199 * 1 2 3 26 26 H 1.09005 * 109.47069 * 239.99506 * 2 1 3 27 27 H 1.09005 * 109.47528 * 120.00326 * 2 1 3 28 28 H 1.09004 * 109.46995 * 49.10017 * 4 3 2 29 29 H 1.09004 * 109.47203 * 169.10060 * 4 3 2 30 30 H 0.96995 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47327 * 310.69385 * 13 3 2 32 32 H 1.08993 * 109.46973 * 190.69725 * 13 3 2 33 33 H 1.08013 * 125.52188 * 179.73502 * 16 15 14 34 34 H 1.08999 * 109.47074 * 65.15898 * 20 19 18 35 35 H 1.08997 * 109.47017 * 185.15214 * 20 19 18 36 36 H 1.09001 * 109.47215 * 305.15696 * 20 19 18 37 37 H 1.08996 * 109.47706 * 60.00105 * 21 19 18 38 38 H 1.09003 * 109.47463 * 180.02562 * 21 19 18 39 39 H 1.09004 * 109.47301 * 300.00004 * 21 19 18 40 40 H 1.09005 * 109.47247 * 66.66867 * 22 19 18 41 41 H 1.08999 * 109.47410 * 186.66822 * 22 19 18 42 42 H 1.09004 * 109.47537 * 306.67010 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5299 2.1165 -1.1760 5 6 2.2222 1.6022 -2.4118 6 1 2.8955 0.7605 -2.3429 7 6 1.9960 2.2061 -3.6304 8 7 2.6006 1.7576 -4.7089 9 14 0.8322 3.6623 -3.7495 10 1 1.5925 4.9216 -3.5466 11 1 0.1959 3.6790 -5.0912 12 1 -0.2172 3.5439 -2.7055 13 6 1.6472 2.0750 1.2422 14 6 2.4513 1.5164 2.3878 15 7 2.1587 0.4470 3.0823 16 6 3.0870 0.2473 4.0170 17 7 3.9874 1.1907 3.9295 18 7 3.5941 2.0303 2.8746 19 6 4.2911 3.2279 2.3989 20 6 3.4307 4.4624 2.6759 21 6 5.6283 3.3638 3.1298 22 6 4.5420 3.1083 0.8945 23 1 -0.3632 0.6070 0.8293 24 1 -0.3633 0.4147 -0.9403 25 1 -0.3634 -1.0216 0.1110 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.4544 1.9687 -1.2738 29 1 1.7413 3.1792 -1.0568 30 1 2.4418 2.1827 -5.5662 31 1 0.5852 1.9253 1.4366 32 1 1.8511 3.1409 1.1408 33 1 3.0923 -0.5609 4.7336 34 1 3.3283 4.5998 3.7523 35 1 3.9062 5.3416 2.2411 36 1 2.4449 4.3254 2.2316 37 1 6.2413 2.4843 2.9325 38 1 6.1468 4.2551 2.7762 39 1 5.4496 3.4490 4.2017 40 1 3.5898 3.1307 0.3644 41 1 5.1624 3.9406 0.5622 42 1 5.0525 2.1683 0.6848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282970671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:42 Heat of formation + Delta-G solvation = 80.221001 kcal Electronic energy + Delta-G solvation = -21731.449217 eV Core-core repulsion = 18748.235594 eV Total energy + Delta-G solvation = -2983.213623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.15613 -39.09244 -38.06352 -34.71909 -32.91106 -32.11002 -31.28544 -29.69208 -28.41701 -28.27702 -26.72838 -24.73568 -23.78944 -22.18865 -21.25466 -20.12777 -18.83973 -17.48176 -17.11245 -16.95171 -16.32292 -16.05988 -15.78779 -15.25665 -14.95399 -14.77162 -14.49316 -14.42101 -13.70217 -13.50813 -13.35643 -13.25589 -13.20840 -13.04291 -12.84348 -12.77912 -12.64981 -12.38516 -12.28231 -12.17487 -11.87251 -11.68275 -11.52960 -11.40972 -10.87689 -10.71683 -10.63251 -10.44204 -9.03690 -8.21613 -6.24364 0.66161 1.37194 1.39559 1.42113 1.51702 1.99438 2.39559 3.07279 3.13836 3.41673 3.44461 3.75937 3.79884 3.88908 3.99258 4.25232 4.33679 4.39624 4.56089 4.61728 4.65116 4.68333 4.72123 4.76687 4.77678 4.85690 4.87365 4.99338 5.10948 5.14157 5.20630 5.24965 5.35876 5.44055 5.49413 5.58445 5.63153 5.90550 6.02428 6.28509 6.62993 6.81739 7.20757 7.38153 8.95304 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.006631 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.909184 B = 4221.398834 C = 4935.107167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.062 3.938 3 N -0.527 5.527 4 C 0.171 3.829 5 C -0.504 4.504 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.952 5.952 9 Si 0.942 3.058 10 H -0.261 1.261 11 H -0.290 1.290 12 H -0.244 1.244 13 C 0.117 3.883 14 C 0.292 3.708 15 N -0.565 5.565 16 C 0.185 3.815 17 N -0.341 5.341 18 N -0.357 5.357 19 C 0.168 3.832 20 C -0.158 4.158 21 C -0.132 4.132 22 C -0.157 4.157 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.006 0.994 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.244 0.756 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 6.238 16.738 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.066 4.066 3 N -0.252 5.252 4 C 0.044 3.956 5 C -0.543 4.543 6 H 0.049 0.951 7 C -0.188 4.188 8 N -0.593 5.593 9 Si 0.765 3.235 10 H -0.186 1.186 11 H -0.216 1.216 12 H -0.168 1.168 13 C -0.012 4.012 14 C 0.015 3.985 15 N -0.294 5.294 16 C -0.117 4.117 17 N -0.169 5.169 18 N -0.148 5.148 19 C 0.086 3.914 20 C -0.216 4.216 21 C -0.190 4.190 22 C -0.215 4.215 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.472 6.185 16.939 18.039 hybrid contribution -0.995 0.041 -0.803 1.279 sum -0.522 6.226 16.136 17.303 Atomic orbital electron populations 1.22206 0.97167 1.02555 1.01246 1.21928 0.93915 0.89827 1.00896 1.62042 1.59935 1.02655 1.00531 1.20036 0.94054 0.93896 0.87572 1.21129 1.25884 1.15545 0.91707 0.95064 1.25800 0.97620 1.00340 0.95070 1.70065 1.45488 1.43742 0.99982 0.85798 0.79933 0.79749 0.78023 1.18608 1.21573 1.16768 1.20821 0.96498 0.98535 0.85394 1.24171 0.87508 0.91014 0.95783 1.70446 1.31123 1.17298 1.10510 1.26525 0.88393 0.98819 0.97998 1.77863 1.24559 1.06318 1.08193 1.50801 1.18011 1.22000 1.24034 1.21174 0.94118 0.81167 0.94961 1.22349 0.99909 0.96219 1.03138 1.21856 0.93463 1.03177 1.00458 1.22321 1.04215 1.02587 0.92400 0.91863 0.93430 0.91381 0.93279 0.91058 0.97656 0.94531 0.92652 0.90617 0.87465 0.74034 0.91327 0.87427 0.91891 0.93302 0.88261 0.91598 0.90853 0.88539 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 9.22 71.98 0.66 -5.13 16 2 C 0.06 2.42 5.77 86.30 0.50 2.92 16 3 N -0.53 -20.47 3.77 -905.35 -3.41 -23.88 16 4 C 0.17 7.43 3.31 85.55 0.28 7.71 16 5 C -0.50 -27.70 9.22 25.60 0.24 -27.46 16 6 H 0.03 1.97 7.51 -2.91 -0.02 1.95 16 7 C 0.01 0.47 5.47 84.65 0.46 0.94 16 8 N -0.95 -58.25 13.96 21.45 0.30 -57.95 16 9 Si 0.94 41.40 27.38 68.60 1.88 43.27 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.24 -9.76 6.68 99.48 0.66 -9.09 16 13 C 0.12 3.70 4.09 85.56 0.35 4.05 16 14 C 0.29 9.38 6.43 138.23 0.89 10.27 16 15 N -0.56 -18.32 10.12 -191.78 -1.94 -20.26 16 16 C 0.18 5.24 13.03 180.77 2.36 7.59 16 17 N -0.34 -10.35 11.82 -61.24 -0.72 -11.07 16 18 N -0.36 -10.68 3.47 -298.52 -1.03 -11.72 16 19 C 0.17 4.11 1.06 3.60 0.00 4.11 16 20 C -0.16 -2.96 8.56 71.98 0.62 -2.35 16 21 C -0.13 -2.75 8.05 71.98 0.58 -2.17 16 22 C -0.16 -4.44 8.24 71.98 0.59 -3.85 16 23 H 0.06 1.92 6.07 -2.38 -0.01 1.90 16 24 H 0.05 1.73 6.50 -2.39 -0.02 1.71 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 2.20 7.13 -2.38 -0.02 2.19 16 27 H 0.07 2.72 6.50 -2.38 -0.02 2.71 16 28 H 0.01 0.25 5.28 -2.39 -0.01 0.24 16 29 H 0.04 1.49 6.74 -2.38 -0.02 1.48 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.08 2.26 5.91 -2.39 -0.01 2.24 16 32 H 0.11 2.99 4.01 -2.39 -0.01 2.98 16 33 H 0.24 4.70 8.06 -2.90 -0.02 4.68 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.24 5.60 -2.39 -0.01 1.23 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 2.36 4.36 -2.38 -0.01 2.35 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 42 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -67.74 320.94 3.57 -64.17 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.97 Total: 20.81 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 7.53 Total: -3.37 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -6.81 Total: -124.88 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.27 kcal Total: -67.74 3.57 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282970671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.391 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds