Wall clock time and date at job start Mon Mar 30 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46960 * 2 1 4 4 N 1.46895 * 109.47223 * 120.00065 * 2 1 3 5 5 C 1.46896 * 111.00279 * 274.99953 * 4 2 1 6 6 C 1.53002 * 109.47100 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47009 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47207 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99749 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99805 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99810 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47437 * 60.00158 * 12 10 8 14 14 H 1.48512 * 109.46678 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47272 * 299.99265 * 12 10 8 16 16 C 1.53002 * 109.46743 * 240.00128 * 2 1 3 17 17 C 1.53002 * 109.47105 * 55.45829 * 16 2 1 18 18 C 1.52994 * 109.47118 * 295.45805 * 16 2 1 19 19 N 1.46502 * 109.46804 * 175.45696 * 16 2 1 20 20 C 1.34431 * 126.81892 * 164.76093 * 19 16 2 21 21 N 1.30829 * 108.07673 * 179.73271 * 20 19 16 22 22 C 1.33239 * 109.82785 * 0.02562 * 21 20 19 23 23 N 1.30710 * 108.95064 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46932 * 294.53310 * 1 2 3 25 25 H 1.08999 * 109.47489 * 54.52924 * 1 2 3 26 26 H 1.09001 * 109.47467 * 174.53551 * 1 2 3 27 27 H 1.00903 * 110.99854 * 151.04237 * 4 2 1 28 28 H 1.08999 * 109.46705 * 299.99900 * 5 4 2 29 29 H 1.08990 * 109.47290 * 59.99903 * 5 4 2 30 30 H 1.08995 * 109.46906 * 299.99931 * 6 5 4 31 31 H 1.09007 * 109.47083 * 59.99983 * 6 5 4 32 32 H 1.09001 * 109.47208 * 300.00518 * 7 6 5 33 33 H 1.09001 * 109.46533 * 59.99945 * 7 6 5 34 34 H 0.97001 * 119.99898 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47363 * 180.02562 * 17 16 2 36 36 H 1.09001 * 109.47361 * 299.99936 * 17 16 2 37 37 H 1.09002 * 109.47413 * 59.99948 * 17 16 2 38 38 H 1.08998 * 109.47582 * 299.99792 * 18 16 2 39 39 H 1.09001 * 109.47037 * 60.00254 * 18 16 2 40 40 H 1.09009 * 109.47029 * 180.02562 * 18 16 2 41 41 H 1.08006 * 125.96130 * 359.77873 * 20 19 16 42 42 H 1.08003 * 125.52653 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5964 -0.5330 3.5741 7 6 2.6624 0.4202 4.7691 8 6 3.1679 -0.3241 5.9780 9 1 3.4175 -1.3721 5.9016 10 6 3.3117 0.3328 7.1817 11 7 3.0082 1.6091 7.2746 12 14 3.9389 -0.5897 8.6800 13 1 5.2952 -1.1255 8.3995 14 1 4.0029 0.3355 9.8399 15 1 3.0179 -1.7120 8.9918 16 6 2.0399 -0.7212 -1.2493 17 6 1.4387 -0.0689 -2.4959 18 6 1.6253 -2.1929 -1.1935 19 7 3.5009 -0.6272 -1.3053 20 6 4.3264 -1.3587 -2.0738 21 7 5.5528 -0.9693 -1.8372 22 6 5.5503 0.0040 -0.9273 23 7 4.3168 0.2489 -0.5711 24 1 -0.3633 0.4267 0.9349 25 1 -0.3634 0.5963 -0.8369 26 1 -0.3634 -1.0230 -0.0979 27 1 2.9173 -1.1205 1.0286 28 1 2.7589 1.0461 2.1181 29 1 1.0873 0.6162 2.5525 30 1 1.9203 -1.3568 3.8029 31 1 3.5919 -0.9264 3.3681 32 1 3.3386 1.2438 4.5400 33 1 1.6671 0.8139 4.9751 34 1 3.1090 2.0712 8.1215 35 1 1.8016 -0.5830 -3.3859 36 1 0.3518 -0.1388 -2.4543 37 1 1.7341 0.9796 -2.5357 38 1 2.0536 -2.6577 -0.3055 39 1 0.5383 -2.2628 -1.1519 40 1 1.9890 -2.7068 -2.0834 41 1 4.0290 -2.1323 -2.7664 42 1 6.4256 0.5087 -0.5458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283690445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:30 Heat of formation + Delta-G solvation = 76.864115 kcal Electronic energy + Delta-G solvation = -20680.481494 eV Core-core repulsion = 17697.122306 eV Total energy + Delta-G solvation = -2983.359188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25948 -38.71963 -35.36151 -33.31262 -31.91645 -31.41422 -30.47359 -28.75733 -27.77204 -26.13159 -24.43256 -22.80933 -21.94561 -21.42284 -20.20347 -19.27901 -17.25588 -16.34865 -15.99172 -15.76979 -15.25245 -14.79477 -14.49841 -14.29886 -14.12198 -13.48102 -13.27275 -12.99540 -12.78602 -12.60110 -12.33036 -12.15849 -11.95914 -11.82367 -11.65624 -11.46985 -11.28107 -10.83518 -10.63295 -10.49187 -10.45292 -10.03793 -9.86726 -9.77310 -9.63635 -9.27961 -9.01415 -8.29756 -8.16010 -5.95069 -3.97016 1.56967 2.13398 2.91497 3.36704 3.40453 3.43473 3.98625 4.20143 4.23798 4.46795 4.50533 4.68919 4.72404 4.97254 5.13111 5.18816 5.25888 5.32707 5.40373 5.40538 5.53521 5.60263 5.68705 5.83797 5.87892 5.96360 6.04345 6.19866 6.21773 6.37632 6.43357 6.73514 6.77828 6.81368 7.18951 7.36177 7.62467 7.73355 7.89504 8.01997 8.05610 8.49075 9.09840 9.66570 11.16396 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.004019 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.594387 B = 6964.565282 C = 7596.351297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 H 0.057 0.943 4 N -0.679 5.679 5 C 0.063 3.937 6 C -0.104 4.104 7 C 0.024 3.976 8 C -0.518 4.518 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.176 3.824 17 C -0.159 4.159 18 C -0.155 4.155 19 N -0.370 5.370 20 C 0.251 3.749 21 N -0.548 5.548 22 C 0.196 3.804 23 N -0.311 5.311 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.337 0.663 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.212 0.788 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -5.045 -22.656 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 H 0.075 0.925 4 N -0.310 5.310 5 C -0.066 4.066 6 C -0.142 4.142 7 C -0.014 4.014 8 C -0.557 4.557 9 H 0.072 0.928 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.093 3.907 17 C -0.217 4.217 18 C -0.213 4.213 19 N -0.161 5.161 20 C -0.046 4.046 21 N -0.276 5.276 22 C -0.107 4.107 23 N -0.138 5.138 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.229 0.771 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.316 -4.726 -21.969 22.882 hybrid contribution 1.093 0.016 0.548 1.223 sum -3.222 -4.710 -21.421 22.168 Atomic orbital electron populations 1.21958 0.93559 1.02410 1.02197 1.21565 0.96011 0.96603 0.87856 0.92470 1.60807 1.33125 1.33417 1.03683 1.22117 1.00275 0.93884 0.90299 1.21590 0.99058 0.99362 0.94221 1.19044 0.97026 0.94214 0.91102 1.21220 1.43533 0.96323 0.94590 0.92822 1.25021 0.95652 0.94874 0.98912 1.69962 1.48959 1.08975 1.25739 0.86664 0.79446 0.79607 0.82319 1.20280 1.21300 1.20248 1.21124 0.73626 0.98310 0.97688 1.22300 1.02302 1.01506 0.95613 1.22214 1.03677 0.92277 1.03128 1.50890 1.07782 1.27047 1.30426 1.25860 0.85731 0.97097 0.95926 1.70549 1.21122 1.16028 1.19859 1.26028 0.95585 0.94941 0.94170 1.78137 1.02898 1.14635 1.18160 0.91511 0.92496 0.91619 0.84498 0.95330 0.91687 0.92804 0.93972 0.96813 0.96661 0.93020 0.91734 0.89498 0.91644 0.90253 0.89361 0.92205 0.77118 0.76845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.65 37.16 0.32 -1.13 16 2 C 0.09 1.09 1.59 -67.71 -0.11 0.98 16 3 H 0.06 0.82 7.57 -51.93 -0.39 0.43 16 4 N -0.68 -10.18 5.49 -106.73 -0.59 -10.77 16 5 C 0.06 1.15 5.48 -3.83 -0.02 1.13 16 6 C -0.10 -2.28 5.41 -26.73 -0.14 -2.43 16 7 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 8 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 12 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 C 0.18 1.66 0.68 -131.82 -0.09 1.57 16 17 C -0.16 -1.13 8.27 37.16 0.31 -0.82 16 18 C -0.15 -1.20 7.84 37.15 0.29 -0.91 16 19 N -0.37 -4.17 2.89 -49.88 -0.14 -4.32 16 20 C 0.25 2.56 11.81 -90.65 -1.07 1.49 16 21 N -0.55 -6.93 11.19 -15.83 -0.18 -7.10 16 22 C 0.20 2.53 13.03 -91.82 -1.20 1.33 16 23 N -0.31 -4.40 11.08 29.29 0.32 -4.07 16 24 H 0.07 0.79 7.35 -51.93 -0.38 0.40 16 25 H 0.06 0.45 6.68 -51.93 -0.35 0.11 16 26 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 27 H 0.34 5.36 6.77 -39.29 -0.27 5.09 16 28 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 29 H 0.06 1.19 7.36 -51.93 -0.38 0.81 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.49 6.48 -51.93 -0.34 0.15 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.79 7.20 -51.93 -0.37 0.41 16 39 H 0.09 0.59 6.44 -51.93 -0.33 0.26 16 40 H 0.06 0.33 7.43 -51.92 -0.39 -0.06 16 41 H 0.21 1.24 7.59 -52.48 -0.40 0.84 16 42 H 0.22 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -33.36 335.26 -8.92 -42.28 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.84 Total: 0.88 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.26 Total: -12.25 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.15 Total: -53.16 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.36 -8.92 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283690445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.148 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds