Wall clock time and date at job start Mon Mar 30 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46960 * 2 1 4 4 N 1.46895 * 109.47223 * 120.00065 * 2 1 3 5 5 C 1.46896 * 111.00279 * 274.99953 * 4 2 1 6 6 C 1.53002 * 109.47100 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47009 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47207 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99749 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99805 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99810 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47437 * 60.00158 * 12 10 8 14 14 H 1.48512 * 109.46678 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47272 * 299.99265 * 12 10 8 16 16 C 1.53002 * 109.46743 * 240.00128 * 2 1 3 17 17 C 1.53002 * 109.47105 * 55.45829 * 16 2 1 18 18 C 1.52994 * 109.47118 * 295.45805 * 16 2 1 19 19 N 1.46502 * 109.46804 * 175.45696 * 16 2 1 20 20 C 1.34431 * 126.81892 * 164.76093 * 19 16 2 21 21 N 1.30829 * 108.07673 * 179.73271 * 20 19 16 22 22 C 1.33239 * 109.82785 * 0.02562 * 21 20 19 23 23 N 1.30710 * 108.95064 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46932 * 294.53310 * 1 2 3 25 25 H 1.08999 * 109.47489 * 54.52924 * 1 2 3 26 26 H 1.09001 * 109.47467 * 174.53551 * 1 2 3 27 27 H 1.00903 * 110.99854 * 151.04237 * 4 2 1 28 28 H 1.08999 * 109.46705 * 299.99900 * 5 4 2 29 29 H 1.08990 * 109.47290 * 59.99903 * 5 4 2 30 30 H 1.08995 * 109.46906 * 299.99931 * 6 5 4 31 31 H 1.09007 * 109.47083 * 59.99983 * 6 5 4 32 32 H 1.09001 * 109.47208 * 300.00518 * 7 6 5 33 33 H 1.09001 * 109.46533 * 59.99945 * 7 6 5 34 34 H 0.97001 * 119.99898 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47363 * 180.02562 * 17 16 2 36 36 H 1.09001 * 109.47361 * 299.99936 * 17 16 2 37 37 H 1.09002 * 109.47413 * 59.99948 * 17 16 2 38 38 H 1.08998 * 109.47582 * 299.99792 * 18 16 2 39 39 H 1.09001 * 109.47037 * 60.00254 * 18 16 2 40 40 H 1.09009 * 109.47029 * 180.02562 * 18 16 2 41 41 H 1.08006 * 125.96130 * 359.77873 * 20 19 16 42 42 H 1.08003 * 125.52653 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5964 -0.5330 3.5741 7 6 2.6624 0.4202 4.7691 8 6 3.1679 -0.3241 5.9780 9 1 3.4175 -1.3721 5.9016 10 6 3.3117 0.3328 7.1817 11 7 3.0082 1.6091 7.2746 12 14 3.9389 -0.5897 8.6800 13 1 5.2952 -1.1255 8.3995 14 1 4.0029 0.3355 9.8399 15 1 3.0179 -1.7120 8.9918 16 6 2.0399 -0.7212 -1.2493 17 6 1.4387 -0.0689 -2.4959 18 6 1.6253 -2.1929 -1.1935 19 7 3.5009 -0.6272 -1.3053 20 6 4.3264 -1.3587 -2.0738 21 7 5.5528 -0.9693 -1.8372 22 6 5.5503 0.0040 -0.9273 23 7 4.3168 0.2489 -0.5711 24 1 -0.3633 0.4267 0.9349 25 1 -0.3634 0.5963 -0.8369 26 1 -0.3634 -1.0230 -0.0979 27 1 2.9173 -1.1205 1.0286 28 1 2.7589 1.0461 2.1181 29 1 1.0873 0.6162 2.5525 30 1 1.9203 -1.3568 3.8029 31 1 3.5919 -0.9264 3.3681 32 1 3.3386 1.2438 4.5400 33 1 1.6671 0.8139 4.9751 34 1 3.1090 2.0712 8.1215 35 1 1.8016 -0.5830 -3.3859 36 1 0.3518 -0.1388 -2.4543 37 1 1.7341 0.9796 -2.5357 38 1 2.0536 -2.6577 -0.3055 39 1 0.5383 -2.2628 -1.1519 40 1 1.9890 -2.7068 -2.0834 41 1 4.0290 -2.1323 -2.7664 42 1 6.4256 0.5087 -0.5458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283690445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:30 Heat of formation + Delta-G solvation = 56.836669 kcal Electronic energy + Delta-G solvation = -20681.349950 eV Core-core repulsion = 17697.122306 eV Total energy + Delta-G solvation = -2984.227644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.12358 -39.65687 -36.85597 -35.15747 -33.32679 -32.44505 -31.72901 -29.76804 -28.54498 -27.72607 -25.58185 -24.22740 -23.15000 -22.32367 -22.02154 -20.21354 -18.53746 -18.04714 -17.18223 -16.75372 -16.51861 -16.22783 -15.84074 -15.57215 -15.11831 -14.59178 -14.39938 -14.10358 -13.96819 -13.74194 -13.41683 -13.35042 -13.10672 -13.08207 -12.76488 -12.53527 -12.52525 -12.46313 -12.30302 -12.19063 -11.69160 -11.51246 -11.38908 -11.09856 -10.94807 -10.79665 -10.59312 -10.57861 -9.45814 -8.22295 -6.34180 0.73176 1.36221 1.37800 1.41668 1.49657 2.01407 2.39152 3.04817 3.10391 3.26744 3.49438 3.73534 3.89372 3.97107 4.16500 4.20430 4.27204 4.39934 4.49242 4.62458 4.67281 4.69990 4.75671 4.83314 4.88933 4.90952 4.99848 5.06058 5.10536 5.17635 5.30674 5.36274 5.42269 5.46814 5.49585 5.69085 5.81149 5.98315 6.00111 6.23255 6.31919 6.81641 7.13994 7.35077 8.89658 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.004019 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.594387 B = 6964.565282 C = 7596.351297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.029 0.971 4 N -0.669 5.669 5 C 0.079 3.921 6 C -0.087 4.087 7 C 0.029 3.971 8 C -0.546 4.546 9 H 0.058 0.942 10 C 0.000 4.000 11 N -0.934 5.934 12 Si 0.968 3.032 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.176 3.824 17 C -0.153 4.153 18 C -0.152 4.152 19 N -0.372 5.372 20 C 0.260 3.740 21 N -0.574 5.574 22 C 0.186 3.814 23 N -0.355 5.355 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.332 0.668 28 H 0.010 0.990 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.037 0.963 32 H -0.015 1.015 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.257 0.743 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -7.146 -24.097 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.048 0.952 4 N -0.300 5.300 5 C -0.050 4.050 6 C -0.125 4.125 7 C -0.009 4.009 8 C -0.584 4.584 9 H 0.076 0.924 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.791 3.209 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.190 1.190 16 C 0.093 3.907 17 C -0.212 4.212 18 C -0.210 4.210 19 N -0.163 5.163 20 C -0.036 4.036 21 N -0.302 5.302 22 C -0.117 4.117 23 N -0.182 5.182 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.150 0.850 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.003 0.997 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.272 0.728 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.069 -6.834 -23.433 24.930 hybrid contribution 1.295 0.698 0.945 1.749 sum -3.774 -6.136 -22.488 23.613 Atomic orbital electron populations 1.21956 0.91714 1.03789 1.02241 1.21668 0.97356 0.95262 0.87974 0.95246 1.60790 1.32651 1.32526 1.04042 1.21765 0.99397 0.93350 0.90478 1.21321 0.99037 0.98349 0.93803 1.18931 0.94790 0.94237 0.92945 1.21636 1.44138 0.96801 0.95784 0.92390 1.26010 0.95524 0.95785 1.02468 1.70099 1.49687 1.10727 1.26855 0.85469 0.79167 0.78399 0.77825 1.19286 1.20545 1.18957 1.21324 0.72729 0.99509 0.97136 1.22308 1.03465 1.00375 0.95027 1.22245 1.04586 0.90616 1.03535 1.51016 1.08372 1.26696 1.30245 1.26689 0.84824 0.96778 0.95340 1.70550 1.22675 1.16508 1.20427 1.26375 0.95835 0.95195 0.94274 1.78074 1.03745 1.16512 1.19916 0.93626 0.89878 0.89995 0.85044 0.97221 0.91717 0.92580 0.94416 0.99652 0.98847 0.92687 0.89491 0.87405 0.93416 0.92603 0.87834 0.89070 0.72772 0.75676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.65 71.98 0.62 -1.96 16 2 C 0.09 2.07 1.59 44.92 0.07 2.14 16 3 H 0.03 0.87 7.57 -2.39 -0.02 0.85 16 4 N -0.67 -20.18 5.49 -491.59 -2.70 -22.88 16 5 C 0.08 3.03 5.48 86.30 0.47 3.50 16 6 C -0.09 -3.93 5.41 30.60 0.17 -3.76 16 7 C 0.03 1.61 4.97 29.85 0.15 1.76 16 8 C -0.55 -32.66 9.11 25.60 0.23 -32.43 16 9 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 10 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 11 N -0.93 -58.70 13.29 21.45 0.28 -58.41 16 12 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 16 C 0.18 2.94 0.68 3.60 0.00 2.94 16 17 C -0.15 -1.71 8.27 71.98 0.60 -1.11 16 18 C -0.15 -1.84 7.84 71.98 0.56 -1.27 16 19 N -0.37 -7.94 2.89 -311.73 -0.90 -8.84 16 20 C 0.26 4.72 11.81 180.36 2.13 6.85 16 21 N -0.57 -13.99 11.19 -204.00 -2.28 -16.27 16 22 C 0.19 4.88 13.03 180.77 2.36 7.24 16 23 N -0.35 -10.21 11.08 -61.25 -0.68 -10.89 16 24 H 0.04 1.05 7.35 -2.39 -0.02 1.03 16 25 H 0.08 1.10 6.68 -2.39 -0.02 1.09 16 26 H 0.08 1.26 6.31 -2.39 -0.02 1.24 16 27 H 0.33 10.65 6.77 -89.69 -0.61 10.04 16 28 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 29 H 0.06 2.46 7.36 -2.39 -0.02 2.44 16 30 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 32 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 0.76 6.48 -2.39 -0.02 0.74 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.98 7.20 -2.39 -0.02 0.96 16 39 H 0.10 0.96 6.44 -2.39 -0.02 0.95 16 40 H 0.09 0.55 7.43 -2.38 -0.02 0.53 16 41 H 0.26 1.90 7.59 -2.91 -0.02 1.88 16 42 H 0.23 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -74.91 335.26 3.96 -70.94 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.39 Total: 14.36 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 7.82 Total: -15.66 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.28 Total: -117.30 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.91 3.96 -70.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283690445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.780 kcal (2) G-P(sol) polarization free energy of solvation -74.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds