Wall clock time and date at job start Mon Mar 30 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28598 * 124.61603 * 2 1 4 4 C 1.31380 * 108.71795 * 180.02562 * 3 2 1 5 5 C 1.39679 * 105.89798 * 0.25977 * 4 3 2 6 6 C 1.50701 * 127.04984 * 179.74042 * 5 4 3 7 7 N 1.46900 * 109.46850 * 77.17043 * 6 5 4 8 8 C 1.46907 * 110.99597 * 151.66762 * 7 6 5 9 9 C 1.50701 * 109.47110 * 192.00572 * 8 7 6 10 10 H 1.08009 * 119.99783 * 5.09726 * 9 8 7 11 11 C 1.37874 * 120.00231 * 185.10009 * 9 8 7 12 12 N 1.31512 * 119.99683 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00102 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47024 * 90.00333 * 13 11 9 15 15 H 1.48502 * 109.47447 * 209.99762 * 13 11 9 16 16 H 1.48500 * 109.47329 * 330.00528 * 13 11 9 17 17 C 1.46899 * 111.00388 * 275.61590 * 7 6 5 18 18 C 1.52999 * 109.47239 * 317.01531 * 17 7 6 19 19 C 1.52999 * 109.47240 * 83.93987 * 18 17 7 20 20 C 1.53001 * 109.47277 * 203.94102 * 18 17 7 21 21 C 1.53005 * 109.47219 * 323.94013 * 18 17 7 22 22 N 1.28600 * 124.62008 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47356 * 90.02526 * 1 2 3 24 24 H 1.09002 * 109.47140 * 210.02893 * 1 2 3 25 25 H 1.08997 * 109.47165 * 330.02474 * 1 2 3 26 26 H 1.07997 * 127.05223 * 179.97438 * 4 3 2 27 27 H 1.08991 * 109.47283 * 197.17306 * 6 5 4 28 28 H 1.09007 * 109.46780 * 317.17420 * 6 5 4 29 29 H 1.09003 * 109.47169 * 312.00231 * 8 7 6 30 30 H 1.09002 * 109.47356 * 72.00588 * 8 7 6 31 31 H 0.97005 * 120.00145 * 180.02562 * 12 11 9 32 32 H 1.09008 * 109.46897 * 77.00820 * 17 7 6 33 33 H 1.08997 * 109.47294 * 197.00938 * 17 7 6 34 34 H 1.09006 * 109.47243 * 59.99622 * 19 18 17 35 35 H 1.09004 * 109.47245 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47142 * 299.99553 * 19 18 17 37 37 H 1.09004 * 109.47052 * 59.99572 * 20 18 17 38 38 H 1.08996 * 109.47564 * 179.97438 * 20 18 17 39 39 H 1.09008 * 109.47009 * 300.00302 * 20 18 17 40 40 H 1.08994 * 109.46519 * 43.43768 * 21 18 17 41 41 H 1.08991 * 109.46992 * 163.44021 * 21 18 17 42 42 H 1.09000 * 109.46579 * 283.44282 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6984 -0.0006 5 6 3.4591 -0.6983 -0.0070 6 6 4.6618 -1.6063 -0.0156 7 7 5.2428 -1.6620 1.3325 8 6 5.9223 -2.9445 1.5602 9 6 6.2449 -3.0888 3.0252 10 1 5.9005 -2.3462 3.7297 11 6 6.9798 -4.1689 3.4661 12 7 7.3996 -5.0728 2.6081 13 14 7.3803 -4.3474 5.2818 14 1 6.3048 -5.1216 5.9522 15 1 8.6734 -5.0613 5.4358 16 1 7.4810 -3.0015 5.9013 17 6 6.1569 -0.5346 1.5589 18 6 7.0275 -0.3266 0.3181 19 6 6.2689 0.5273 -0.6999 20 6 8.3220 0.3848 0.7167 21 6 7.3621 -1.6841 -0.3035 22 7 2.1956 -1.0583 0.0005 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8897 0.5143 25 1 -0.3633 0.8902 0.5134 26 1 4.3210 1.3491 -0.0011 27 1 4.3592 -2.6073 -0.3225 28 1 5.4034 -1.2203 -0.7152 29 1 5.2706 -3.7612 1.2495 30 1 6.8447 -2.9750 0.9803 31 1 7.9163 -5.8329 2.9183 32 1 5.5785 0.3689 1.7525 33 1 6.7932 -0.7495 2.4174 34 1 6.0304 1.4944 -0.2571 35 1 6.8893 0.6758 -1.5837 36 1 5.3466 0.0204 -0.9840 37 1 8.8625 -0.2236 1.4419 38 1 8.9425 0.5326 -0.1672 39 1 8.0836 1.3519 1.1596 40 1 6.4683 -2.3077 -0.3170 41 1 7.7192 -1.5387 -1.3230 42 1 8.1372 -2.1727 0.2868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289729441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:02 Heat of formation + Delta-G solvation = 172.362975 kcal Electronic energy + Delta-G solvation = -21632.496906 eV Core-core repulsion = 18653.278859 eV Total energy + Delta-G solvation = -2979.218047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.21816 -39.62683 -34.09518 -33.67541 -32.42197 -31.87505 -29.40399 -27.66784 -26.76612 -26.64783 -25.72392 -23.74390 -21.92635 -20.93787 -20.05550 -18.37277 -17.05368 -16.55626 -16.42100 -15.31240 -14.88547 -14.84423 -14.24048 -13.96399 -13.88344 -13.19056 -12.97301 -12.92033 -12.66946 -12.22044 -11.98542 -11.58871 -11.34536 -11.18275 -11.06639 -10.88010 -10.75857 -10.69448 -10.50668 -10.42868 -10.25543 -9.99525 -9.90348 -9.75037 -9.55969 -9.13195 -8.76958 -8.35727 -6.97829 -5.96993 -3.96291 2.12991 2.59753 2.81295 3.34827 3.41069 3.44785 4.35530 4.48229 4.98454 5.03064 5.11881 5.21522 5.24223 5.26740 5.30748 5.38369 5.50179 5.60937 5.74857 5.90349 5.97087 6.01089 6.06919 6.14096 6.23202 6.35179 6.36893 6.46447 6.53847 6.59092 6.66225 6.76249 6.90976 6.94032 7.01571 7.34762 7.48960 7.87749 8.16335 8.27391 8.62197 8.68320 9.10842 9.66276 11.12968 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.006247 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.782550 B = 4481.317481 C = 5422.607115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.171 5.171 3 N -0.302 5.302 4 C -0.032 4.032 5 C 0.036 3.964 6 C 0.090 3.910 7 N -0.526 5.526 8 C 0.161 3.839 9 C -0.500 4.500 10 H 0.060 0.940 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.893 3.107 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.275 1.275 17 C 0.070 3.930 18 C -0.100 4.100 19 C -0.175 4.175 20 C -0.134 4.134 21 C -0.167 4.167 22 N -0.286 5.286 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.198 0.802 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 11.132 -7.905 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.071 5.071 3 N -0.143 5.143 4 C -0.214 4.214 5 C -0.128 4.128 6 C -0.040 4.040 7 N -0.249 5.249 8 C 0.037 3.963 9 C -0.539 4.539 10 H 0.078 0.922 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.721 3.279 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.059 4.059 18 C -0.102 4.102 19 C -0.231 4.231 20 C -0.192 4.192 21 C -0.223 4.223 22 N -0.128 5.128 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.215 0.785 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.917 10.984 -7.551 15.503 hybrid contribution 1.708 -0.222 0.580 1.818 sum -6.209 10.762 -6.971 14.246 Atomic orbital electron populations 1.21968 0.71122 1.05428 1.04229 1.47826 1.08478 0.99692 1.51098 1.73954 1.04192 1.16367 1.19831 1.25053 0.94154 0.95467 1.06734 1.23416 0.92501 0.93969 1.02926 1.21443 0.90755 0.97446 0.94329 1.62068 1.35124 1.05239 1.22466 1.20550 0.94178 0.83837 0.97715 1.21160 1.32128 1.07736 0.92866 0.92189 1.24926 0.96114 0.95945 0.97516 1.69944 1.37902 1.12291 1.33793 0.86575 0.77533 0.78119 0.85630 1.20828 1.21416 1.19952 1.22249 0.93280 0.93784 0.96581 1.21177 0.96175 0.95596 0.97222 1.22961 1.01733 0.99565 0.98823 1.21817 0.96698 0.99887 1.00780 1.22788 1.03747 0.96701 0.99100 1.74065 1.03993 1.15093 1.19669 0.89883 0.88234 0.88472 0.78546 0.90444 0.87827 0.95931 0.94371 0.93073 0.92781 0.89499 0.92748 0.93170 0.89479 0.92252 0.93511 0.93204 0.89516 0.94220 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.06 11.57 59.85 0.69 1.75 16 2 N -0.17 -2.62 4.35 -16.64 -0.07 -2.69 16 3 N -0.30 -4.83 12.05 30.67 0.37 -4.46 16 4 C -0.03 -0.51 10.04 -17.21 -0.17 -0.68 16 5 C 0.04 0.64 6.46 -82.25 -0.53 0.10 16 6 C 0.09 1.62 3.79 -4.98 -0.02 1.60 16 7 N -0.53 -11.02 4.55 -237.51 -1.08 -12.10 16 8 C 0.16 4.00 3.95 -4.97 -0.02 3.98 16 9 C -0.50 -13.78 8.15 -34.44 -0.28 -14.06 16 10 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.07 1.29 4.85 -3.82 -0.02 1.27 16 18 C -0.10 -1.55 0.77 -154.51 -0.12 -1.67 16 19 C -0.17 -2.26 6.36 37.16 0.24 -2.03 16 20 C -0.13 -1.90 8.29 37.16 0.31 -1.59 16 21 C -0.17 -2.86 6.24 37.16 0.23 -2.62 16 22 N -0.29 -5.15 12.05 33.71 0.41 -4.74 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.20 2.67 4.87 -52.49 -0.26 2.41 16 27 H 0.08 1.48 7.55 -51.93 -0.39 1.09 16 28 H 0.10 1.67 2.16 -51.93 -0.11 1.56 16 29 H 0.02 0.62 7.73 -51.93 -0.40 0.22 16 30 H 0.04 0.96 3.80 -51.93 -0.20 0.76 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 0.94 7.28 -51.92 -0.38 0.56 16 33 H 0.09 1.82 6.59 -51.93 -0.34 1.47 16 34 H 0.05 0.63 6.68 -51.93 -0.35 0.29 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.19 2.76 -51.93 -0.14 1.04 16 37 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.09 1.61 2.94 -51.93 -0.15 1.46 16 41 H 0.04 0.59 8.03 -51.93 -0.42 0.17 16 42 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -31.79 313.50 -5.73 -37.52 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.00 Total: 2.98 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 0.21 Total: -12.47 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.36 Total: -49.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.79 -5.73 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289729441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.880 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds