Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28598 * 124.61603 * 2 1 4 4 C 1.31380 * 108.71795 * 180.02562 * 3 2 1 5 5 C 1.39679 * 105.89798 * 0.25977 * 4 3 2 6 6 C 1.50701 * 127.04984 * 179.74042 * 5 4 3 7 7 N 1.46900 * 109.46850 * 77.17043 * 6 5 4 8 8 C 1.46907 * 110.99597 * 151.66762 * 7 6 5 9 9 C 1.50701 * 109.47110 * 192.00572 * 8 7 6 10 10 H 1.08009 * 119.99783 * 5.09726 * 9 8 7 11 11 C 1.37874 * 120.00231 * 185.10009 * 9 8 7 12 12 N 1.31512 * 119.99683 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00102 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47024 * 90.00333 * 13 11 9 15 15 H 1.48502 * 109.47447 * 209.99762 * 13 11 9 16 16 H 1.48500 * 109.47329 * 330.00528 * 13 11 9 17 17 C 1.46899 * 111.00388 * 275.61590 * 7 6 5 18 18 C 1.52999 * 109.47239 * 317.01531 * 17 7 6 19 19 C 1.52999 * 109.47240 * 83.93987 * 18 17 7 20 20 C 1.53001 * 109.47277 * 203.94102 * 18 17 7 21 21 C 1.53005 * 109.47219 * 323.94013 * 18 17 7 22 22 N 1.28600 * 124.62008 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47356 * 90.02526 * 1 2 3 24 24 H 1.09002 * 109.47140 * 210.02893 * 1 2 3 25 25 H 1.08997 * 109.47165 * 330.02474 * 1 2 3 26 26 H 1.07997 * 127.05223 * 179.97438 * 4 3 2 27 27 H 1.08991 * 109.47283 * 197.17306 * 6 5 4 28 28 H 1.09007 * 109.46780 * 317.17420 * 6 5 4 29 29 H 1.09003 * 109.47169 * 312.00231 * 8 7 6 30 30 H 1.09002 * 109.47356 * 72.00588 * 8 7 6 31 31 H 0.97005 * 120.00145 * 180.02562 * 12 11 9 32 32 H 1.09008 * 109.46897 * 77.00820 * 17 7 6 33 33 H 1.08997 * 109.47294 * 197.00938 * 17 7 6 34 34 H 1.09006 * 109.47243 * 59.99622 * 19 18 17 35 35 H 1.09004 * 109.47245 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47142 * 299.99553 * 19 18 17 37 37 H 1.09004 * 109.47052 * 59.99572 * 20 18 17 38 38 H 1.08996 * 109.47564 * 179.97438 * 20 18 17 39 39 H 1.09008 * 109.47009 * 300.00302 * 20 18 17 40 40 H 1.08994 * 109.46519 * 43.43768 * 21 18 17 41 41 H 1.08991 * 109.46992 * 163.44021 * 21 18 17 42 42 H 1.09000 * 109.46579 * 283.44282 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6984 -0.0006 5 6 3.4591 -0.6983 -0.0070 6 6 4.6618 -1.6063 -0.0156 7 7 5.2428 -1.6620 1.3325 8 6 5.9223 -2.9445 1.5602 9 6 6.2449 -3.0888 3.0252 10 1 5.9005 -2.3462 3.7297 11 6 6.9798 -4.1689 3.4661 12 7 7.3996 -5.0728 2.6081 13 14 7.3803 -4.3474 5.2818 14 1 6.3048 -5.1216 5.9522 15 1 8.6734 -5.0613 5.4358 16 1 7.4810 -3.0015 5.9013 17 6 6.1569 -0.5346 1.5589 18 6 7.0275 -0.3266 0.3181 19 6 6.2689 0.5273 -0.6999 20 6 8.3220 0.3848 0.7167 21 6 7.3621 -1.6841 -0.3035 22 7 2.1956 -1.0583 0.0005 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8897 0.5143 25 1 -0.3633 0.8902 0.5134 26 1 4.3210 1.3491 -0.0011 27 1 4.3592 -2.6073 -0.3225 28 1 5.4034 -1.2203 -0.7152 29 1 5.2706 -3.7612 1.2495 30 1 6.8447 -2.9750 0.9803 31 1 7.9163 -5.8329 2.9183 32 1 5.5785 0.3689 1.7525 33 1 6.7932 -0.7495 2.4174 34 1 6.0304 1.4944 -0.2571 35 1 6.8893 0.6758 -1.5837 36 1 5.3466 0.0204 -0.9840 37 1 8.8625 -0.2236 1.4419 38 1 8.9425 0.5326 -0.1672 39 1 8.0836 1.3519 1.1596 40 1 6.4683 -2.3077 -0.3170 41 1 7.7192 -1.5387 -1.3230 42 1 8.1372 -2.1727 0.2868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289729441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = 149.817516 kcal Electronic energy + Delta-G solvation = -21633.474550 eV Core-core repulsion = 18653.278859 eV Total energy + Delta-G solvation = -2980.195691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.45121 -41.07667 -35.58966 -35.08048 -34.06626 -33.30608 -30.73417 -29.20165 -28.36330 -27.80783 -26.96869 -25.45847 -23.24373 -22.46142 -21.49998 -19.68942 -18.51908 -18.15017 -17.72210 -16.77219 -16.67258 -16.21512 -15.72178 -15.46572 -15.29205 -14.46818 -14.27034 -14.09059 -13.81397 -13.57863 -13.29239 -12.97113 -12.86903 -12.75980 -12.64075 -12.40113 -12.29907 -12.21512 -12.09067 -11.86369 -11.70629 -11.54582 -11.37020 -11.22101 -11.05539 -10.94944 -10.50004 -9.99506 -8.63567 -8.11278 -6.19204 0.89638 1.40759 1.41523 1.49816 1.53196 1.62607 2.43742 3.18681 3.20490 3.60701 3.93687 3.99923 4.02274 4.15893 4.21410 4.34022 4.40963 4.44874 4.57437 4.66319 4.68457 4.78919 4.81703 4.93309 5.01263 5.02486 5.13354 5.19642 5.24651 5.31154 5.31579 5.40404 5.44057 5.54722 5.56522 5.63369 5.75205 5.88609 6.18856 6.49237 6.75091 6.96899 7.43905 7.47783 8.96798 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.006247 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.782550 B = 4481.317481 C = 5422.607115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.165 5.165 3 N -0.305 5.305 4 C -0.030 4.030 5 C 0.016 3.984 6 C 0.097 3.903 7 N -0.540 5.540 8 C 0.176 3.824 9 C -0.514 4.514 10 H 0.050 0.950 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.957 3.043 14 H -0.280 1.280 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.072 3.928 18 C -0.095 4.095 19 C -0.169 4.169 20 C -0.130 4.130 21 C -0.164 4.164 22 N -0.313 5.313 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.119 0.881 26 H 0.220 0.780 27 H 0.054 0.946 28 H 0.129 0.871 29 H -0.015 1.015 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 13.435 -8.300 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.067 5.067 3 N -0.148 5.148 4 C -0.211 4.211 5 C -0.147 4.147 6 C -0.031 4.031 7 N -0.263 5.263 8 C 0.051 3.949 9 C -0.553 4.553 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.571 5.571 13 Si 0.783 3.217 14 H -0.206 1.206 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.056 4.056 18 C -0.096 4.096 19 C -0.225 4.225 20 C -0.188 4.188 21 C -0.221 4.221 22 N -0.157 5.157 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.137 0.863 26 H 0.236 0.764 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.004 0.996 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.258 13.307 -7.951 17.564 hybrid contribution 1.700 -0.925 0.670 2.048 sum -6.558 12.382 -7.281 15.790 Atomic orbital electron populations 1.22489 0.68220 1.06988 1.06392 1.48392 1.10042 0.98839 1.49405 1.73948 1.04311 1.16545 1.19953 1.25333 0.94886 0.94702 1.06172 1.23280 0.92173 0.94772 1.04473 1.21400 0.91653 0.96829 0.93234 1.61925 1.35492 1.04169 1.24748 1.20231 0.93441 0.84918 0.96291 1.21440 1.32097 1.07606 0.94126 0.93135 1.25710 0.95993 0.95601 1.01808 1.70056 1.38544 1.12794 1.35711 0.85571 0.77424 0.78288 0.80451 1.20581 1.20643 1.19195 1.22218 0.93139 0.93142 0.97089 1.21104 0.96766 0.95329 0.96433 1.22854 1.01179 0.99684 0.98782 1.21775 0.95804 1.00048 1.01167 1.22679 1.01851 0.97261 1.00260 1.74010 1.04640 1.16616 1.20435 0.87422 0.87420 0.86254 0.76398 0.92715 0.85458 0.99647 0.94559 0.92928 0.91156 0.92590 0.90593 0.90993 0.90273 0.94542 0.91569 0.91329 0.91477 0.91502 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.61 11.57 127.77 1.48 3.08 16 2 N -0.16 -4.78 4.35 -206.55 -0.90 -5.68 16 3 N -0.31 -9.09 12.05 -56.86 -0.69 -9.77 16 4 C -0.03 -0.88 10.04 85.11 0.85 -0.03 16 5 C 0.02 0.55 6.46 42.98 0.28 0.83 16 6 C 0.10 3.59 3.79 85.56 0.32 3.91 16 7 N -0.54 -23.25 4.55 -905.33 -4.12 -27.37 16 8 C 0.18 9.21 3.95 85.56 0.34 9.55 16 9 C -0.51 -29.35 8.15 25.60 0.21 -29.14 16 10 H 0.05 2.91 7.65 -2.91 -0.02 2.89 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 13 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 C 0.07 2.67 4.85 86.30 0.42 3.09 16 18 C -0.09 -2.80 0.77 -52.18 -0.04 -2.84 16 19 C -0.17 -3.81 6.36 71.98 0.46 -3.35 16 20 C -0.13 -3.43 8.29 71.98 0.60 -2.83 16 21 C -0.16 -5.61 6.24 71.98 0.45 -5.16 16 22 N -0.31 -11.11 12.05 -47.25 -0.57 -11.68 16 23 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.22 5.19 4.87 -2.91 -0.01 5.18 16 27 H 0.05 2.22 7.55 -2.39 -0.02 2.20 16 28 H 0.13 4.03 2.16 -2.38 -0.01 4.03 16 29 H -0.01 -0.85 7.73 -2.39 -0.02 -0.87 16 30 H 0.04 1.93 3.80 -2.39 -0.01 1.92 16 31 H 0.26 14.82 8.31 -92.70 -0.77 14.04 16 32 H 0.07 2.34 7.28 -2.38 -0.02 2.33 16 33 H 0.06 2.40 6.59 -2.39 -0.02 2.38 16 34 H 0.08 1.42 6.68 -2.38 -0.02 1.41 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.95 2.76 -2.39 -0.01 1.95 16 37 H 0.04 1.11 8.12 -2.38 -0.02 1.09 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.07 2.57 2.94 -2.39 -0.01 2.56 16 41 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 42 H 0.04 1.49 7.11 -2.39 -0.02 1.47 16 Total: -1.00 -70.52 313.50 2.89 -67.63 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.03 Total: 17.10 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.83 Total: -22.05 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -5.99 Total: -109.80 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.52 2.89 -67.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289729441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.451 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds