Wall clock time and date at job start Mon Mar 30 2020 00:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99923 * 2 1 4 4 C 1.50699 * 109.47010 * 293.95580 * 3 2 1 5 5 N 1.30514 * 126.34647 * 269.95579 * 4 3 2 6 6 N 1.28592 * 109.67695 * 180.02562 * 5 4 3 7 7 C 1.30520 * 109.67162 * 359.72204 * 6 5 4 8 8 N 1.35490 * 126.34621 * 90.00497 * 4 3 2 9 9 C 1.46508 * 126.98234 * 359.95731 * 8 4 3 10 10 C 1.46902 * 110.99950 * 123.95239 * 2 1 3 11 11 C 1.53001 * 109.46695 * 85.48638 * 10 2 1 12 12 C 1.53007 * 109.47199 * 300.49346 * 11 10 2 13 13 C 1.52989 * 109.47441 * 60.49704 * 11 10 2 14 14 C 1.52998 * 109.47074 * 180.49926 * 11 10 2 15 15 C 1.50699 * 109.47580 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99634 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00283 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00034 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00116 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47020 * 89.99671 * 19 17 15 21 21 H 1.48502 * 109.47433 * 209.99833 * 19 17 15 22 22 H 1.48500 * 109.47112 * 330.00110 * 19 17 15 23 23 H 1.08999 * 109.47452 * 66.56666 * 1 2 3 24 24 H 1.08998 * 109.47132 * 186.56672 * 1 2 3 25 25 H 1.09001 * 109.47210 * 306.56259 * 1 2 3 26 26 H 1.08995 * 109.47182 * 173.95023 * 3 2 1 27 27 H 1.09003 * 109.47207 * 53.95423 * 3 2 1 28 28 H 1.07995 * 126.35267 * 180.30026 * 7 6 5 29 29 H 1.09000 * 109.46758 * 90.00187 * 9 8 4 30 30 H 1.08994 * 109.46609 * 330.00296 * 9 8 4 31 31 H 1.08996 * 109.46661 * 210.00400 * 9 8 4 32 32 H 1.09004 * 109.46859 * 205.48210 * 10 2 1 33 33 H 1.08995 * 109.47259 * 325.48156 * 10 2 1 34 34 H 1.09003 * 109.46590 * 68.59711 * 12 11 10 35 35 H 1.08997 * 109.47031 * 188.59852 * 12 11 10 36 36 H 1.09001 * 109.46995 * 308.60555 * 12 11 10 37 37 H 1.08999 * 109.47310 * 60.00189 * 13 11 10 38 38 H 1.08998 * 109.47458 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47472 * 300.00012 * 13 11 10 40 40 H 1.09001 * 109.46863 * 299.99920 * 14 11 10 41 41 H 1.09009 * 109.47278 * 59.99275 * 14 11 10 42 42 H 0.97008 * 119.99838 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 7 2.3501 2.0503 -2.3915 6 7 1.7424 2.7237 -3.3030 7 6 0.6110 3.1757 -2.8347 8 7 0.5148 2.7646 -1.5472 9 6 -0.5830 3.0352 -0.6154 10 6 1.9955 -0.7660 1.1376 11 6 2.0722 -2.2474 0.7631 12 6 0.6757 -2.7539 0.3966 13 6 3.0087 -2.4231 -0.4339 14 6 2.6088 -3.0469 1.9521 15 6 2.6838 -4.5062 1.5835 16 1 2.3796 -4.8309 0.5993 17 6 3.1417 -5.4267 2.5021 18 7 3.2077 -6.7001 2.1803 19 14 3.6685 -4.8650 4.2040 20 1 2.5009 -4.9016 5.1208 21 1 4.7293 -5.7687 4.7173 22 1 4.1941 -3.4783 4.1270 23 1 -0.3634 0.4087 -0.9429 24 1 -0.3633 -1.0209 0.1175 25 1 -0.3634 0.6122 0.8254 26 1 3.0797 1.3444 0.1083 27 1 1.5611 1.9274 0.8309 28 1 -0.1129 3.7696 -3.3727 29 1 -0.3783 3.9568 -0.0707 30 1 -0.6730 2.2088 0.0896 31 1 -1.5141 3.1411 -1.1720 32 1 2.9918 -0.4029 1.3901 33 1 1.3352 -0.6418 1.9959 34 1 0.3563 -2.2939 -0.5386 35 1 0.7014 -3.8371 0.2785 36 1 -0.0255 -2.4912 1.1887 37 1 4.0036 -2.0624 -0.1728 38 1 3.0638 -3.4785 -0.7004 39 1 2.6265 -1.8535 -1.2810 40 1 3.6036 -2.6862 2.2132 41 1 1.9415 -2.9218 2.8050 42 1 3.5302 -7.3476 2.8265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290215270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:47 Heat of formation + Delta-G solvation = 92.310977 kcal Electronic energy + Delta-G solvation = -20997.285631 eV Core-core repulsion = 18014.596269 eV Total energy + Delta-G solvation = -2982.689362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.21715 -38.60611 -35.69429 -34.83519 -32.28214 -31.12629 -28.52725 -27.81415 -27.62290 -26.60787 -25.94951 -23.40986 -22.45127 -21.77499 -20.46403 -18.00833 -17.30898 -16.76553 -16.74362 -15.71147 -15.24723 -14.99264 -14.91129 -14.09944 -13.78588 -13.45616 -13.38219 -13.04770 -12.99539 -12.73063 -12.24579 -12.22584 -11.90592 -11.55905 -11.49909 -10.95982 -10.83600 -10.55453 -10.48492 -10.43029 -10.35442 -10.32958 -9.78658 -9.64357 -9.42196 -9.17785 -8.93933 -8.48491 -8.20338 -5.98417 -3.94519 1.64331 2.28533 2.81800 3.31876 3.40266 3.42994 3.96963 4.17085 4.28868 4.40547 4.48992 4.61967 4.75294 4.88777 5.14668 5.24273 5.32066 5.34828 5.43744 5.53570 5.64943 5.78795 5.89349 5.90774 6.01879 6.08337 6.20596 6.43099 6.64182 6.66167 6.69728 6.85143 7.02569 7.06101 7.14369 7.22698 7.30367 7.39289 7.50354 7.86740 8.61711 8.68433 9.08060 9.64471 11.14741 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.038271 B = 0.004110 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.452298 B = 6810.915518 C = 6939.023647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.524 5.524 3 C 0.139 3.861 4 C 0.193 3.807 5 N -0.277 5.277 6 N -0.298 5.298 7 C 0.142 3.858 8 N -0.477 5.477 9 C 0.062 3.938 10 C 0.064 3.936 11 C -0.041 4.041 12 C -0.135 4.135 13 C -0.118 4.118 14 C -0.005 4.005 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.875 3.125 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.267 1.267 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.021 0.979 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.215 0.785 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.015 0.985 41 H 0.007 0.993 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 21.107 -2.766 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 N -0.248 5.248 3 C 0.009 3.991 4 C -0.075 4.075 5 N -0.118 5.118 6 N -0.138 5.138 7 C -0.145 4.145 8 N -0.169 5.169 9 C -0.081 4.081 10 C -0.063 4.063 11 C -0.042 4.042 12 C -0.192 4.192 13 C -0.176 4.176 14 C -0.042 4.042 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.703 3.297 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.191 1.191 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.039 0.961 26 H 0.128 0.872 27 H 0.066 0.934 28 H 0.232 0.768 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.433 20.445 -4.079 22.489 hybrid contribution -1.258 0.966 2.591 3.039 sum -9.691 21.412 -1.487 23.550 Atomic orbital electron populations 1.23141 0.88093 1.04570 0.99116 1.61840 1.07378 1.10319 1.45300 1.20484 1.02403 0.88711 0.87510 1.24778 0.85582 0.97642 0.99472 1.74304 1.24791 1.15823 0.96833 1.74285 1.04607 1.11188 1.23675 1.26383 1.00410 1.04379 0.83374 1.46235 1.18190 1.40190 1.12308 1.22331 0.88310 1.03833 0.93674 1.22422 0.98999 0.95487 0.89362 1.20353 0.95851 0.90519 0.97463 1.22011 0.95681 1.02735 0.98727 1.21611 0.97569 1.01664 0.96731 1.19638 0.95377 0.96350 0.92882 1.21133 1.42554 0.89492 1.01229 0.90366 1.25014 0.95448 0.94829 0.98286 1.69912 1.47883 1.01319 1.35393 0.86854 0.78553 0.78969 0.85302 1.20583 1.21570 1.19131 0.92623 0.88040 0.96107 0.87181 0.93375 0.76808 0.90082 0.88519 0.88912 0.91220 0.94443 0.93477 0.91095 0.94483 0.94319 0.92158 0.93358 0.96702 0.97476 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 7.20 60.07 0.43 0.41 16 2 N -0.52 -7.05 3.77 -244.37 -0.92 -7.97 16 3 C 0.14 1.62 5.14 -4.98 -0.03 1.59 16 4 C 0.19 2.47 6.66 -155.00 -1.03 1.43 16 5 N -0.28 -4.49 12.21 32.79 0.40 -4.09 16 6 N -0.30 -4.44 12.21 29.69 0.36 -4.08 16 7 C 0.14 1.44 12.74 -89.94 -1.15 0.29 16 8 N -0.48 -4.53 2.83 -122.69 -0.35 -4.88 16 9 C 0.06 0.30 10.27 59.85 0.61 0.92 16 10 C 0.06 0.97 4.24 -3.82 -0.02 0.96 16 11 C -0.04 -0.78 0.60 -154.51 -0.09 -0.87 16 12 C -0.13 -2.43 6.67 37.16 0.25 -2.18 16 13 C -0.12 -2.33 8.06 37.15 0.30 -2.03 16 14 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -13.84 8.09 -34.44 -0.28 -14.12 16 16 H 0.08 2.30 5.97 -52.48 -0.31 1.99 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -27.69 13.96 55.43 0.77 -26.92 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 23 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 24 H 0.10 1.28 3.89 -51.93 -0.20 1.07 16 25 H 0.02 0.19 6.62 -51.93 -0.34 -0.15 16 26 H 0.11 1.31 7.79 -51.93 -0.40 0.91 16 27 H 0.05 0.44 7.77 -51.93 -0.40 0.04 16 28 H 0.22 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.51 4.54 -51.93 -0.24 0.27 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 1.03 7.57 -51.93 -0.39 0.64 16 33 H 0.04 0.54 7.85 -51.93 -0.41 0.13 16 34 H 0.05 0.77 6.20 -51.93 -0.32 0.45 16 35 H 0.07 1.49 6.38 -51.93 -0.33 1.16 16 36 H 0.04 0.61 7.49 -51.93 -0.39 0.22 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 39 H 0.05 0.91 7.62 -51.93 -0.40 0.51 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.16 7.57 -51.92 -0.39 -0.23 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -33.96 319.80 -7.21 -41.17 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.45 Total: -2.85 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.18 Total: -12.04 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.27 Total: -47.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.96 -7.21 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290215270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.478 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds