Wall clock time and date at job start Mon Mar 30 2020 00:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46833 * 2 1 4 4 H 1.08992 * 109.47085 * 54.99695 * 3 2 1 5 5 C 1.53009 * 109.47004 * 294.99701 * 3 2 1 6 6 C 1.50703 * 109.47150 * 175.00287 * 3 2 1 7 7 N 1.30292 * 126.34596 * 60.02193 * 6 3 2 8 8 N 1.28536 * 110.05275 * 179.97438 * 7 6 3 9 9 C 1.31221 * 109.85633 * 359.97438 * 8 7 6 10 10 N 1.38582 * 126.47074 * 179.97438 * 9 8 7 11 11 C 1.46906 * 110.99929 * 298.97585 * 10 9 8 12 12 C 1.46892 * 110.99976 * 62.92983 * 10 9 8 13 13 H 1.09000 * 109.47286 * 299.99915 * 12 10 9 14 14 C 1.53001 * 109.47273 * 60.00020 * 12 10 9 15 15 C 1.50700 * 109.47176 * 179.97438 * 12 10 9 16 16 H 1.08001 * 120.00400 * 324.65414 * 15 12 10 17 17 C 1.37884 * 119.99848 * 144.64686 * 15 12 10 18 18 N 1.31512 * 119.99814 * 180.24352 * 17 15 12 19 19 Si 1.86793 * 119.99866 * 0.24570 * 17 15 12 20 20 H 1.48502 * 109.47184 * 269.94687 * 19 17 15 21 21 H 1.48503 * 109.47628 * 29.94993 * 19 17 15 22 22 H 1.48503 * 109.47127 * 149.94932 * 19 17 15 23 23 N 1.36448 * 107.05443 * 0.23213 * 9 8 7 24 24 C 1.46506 * 127.13677 * 179.76868 * 23 9 8 25 25 H 1.08993 * 109.47401 * 299.99961 * 1 2 3 26 26 H 1.08997 * 109.47346 * 60.00797 * 1 2 3 27 27 H 1.09009 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47304 * 240.00151 * 2 1 3 29 29 H 1.08999 * 109.47462 * 119.99976 * 2 1 3 30 30 H 1.08993 * 109.46936 * 300.00666 * 5 3 2 31 31 H 1.09006 * 109.46678 * 60.00543 * 5 3 2 32 32 H 1.08996 * 109.47105 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.46715 * 189.46016 * 11 10 9 34 34 H 1.08996 * 109.47039 * 309.45730 * 11 10 9 35 35 H 1.09000 * 109.46700 * 69.45722 * 11 10 9 36 36 H 1.09003 * 109.47213 * 54.54315 * 14 12 10 37 37 H 1.08994 * 109.47590 * 174.54790 * 14 12 10 38 38 H 1.09001 * 109.47033 * 294.54811 * 14 12 10 39 39 H 0.96997 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46529 * 95.31512 * 24 23 9 41 41 H 1.08998 * 109.47238 * 215.31598 * 24 23 9 42 42 H 1.09003 * 109.47011 * 335.31979 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6352 2.1265 -1.3075 6 6 3.5419 1.4444 0.1238 7 7 4.3855 0.8948 -0.7032 8 7 5.5897 1.0860 -0.2962 9 6 5.5786 1.7740 0.8212 10 7 6.6850 2.1706 1.5553 11 6 7.4536 1.0077 2.0190 12 6 7.5317 3.0856 0.7785 13 1 7.8744 2.5837 -0.1264 14 6 6.7244 4.3283 0.3977 15 6 8.7216 3.4949 1.6077 16 1 8.6155 3.6325 2.6736 17 6 9.9460 3.6936 1.0056 18 7 10.9855 4.0462 1.7299 19 14 10.1282 3.4621 -0.8390 20 1 10.4953 2.0523 -1.1271 21 1 8.8424 3.7855 -1.5080 22 1 11.1918 4.3646 -1.3485 23 7 4.2717 2.0200 1.1267 24 6 3.7572 2.7513 2.2872 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0697 1.5874 -2.1492 31 1 0.5488 2.1252 -1.3970 32 1 1.9980 3.1543 -1.3073 33 1 8.2148 1.3345 2.7275 34 1 6.7832 0.3001 2.5066 35 1 7.9331 0.5260 1.1669 36 1 6.3007 4.7759 1.2968 37 1 7.3774 5.0493 -0.0940 38 1 5.9198 4.0450 -0.2809 39 1 11.8468 4.1863 1.3063 40 1 3.5804 3.7911 2.0121 41 1 2.8220 2.2985 2.6166 42 1 4.4864 2.7084 3.0962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290658461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:21 Heat of formation + Delta-G solvation = 55.321464 kcal Electronic energy + Delta-G solvation = -21302.399747 eV Core-core repulsion = 18318.106399 eV Total energy + Delta-G solvation = -2984.293348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.98480 -39.00819 -37.33089 -35.77466 -34.74119 -32.32041 -31.28343 -29.61752 -28.44565 -27.47763 -26.23574 -25.83385 -23.54834 -22.74950 -21.32674 -20.37607 -19.24819 -17.94837 -17.68374 -16.75525 -16.55685 -16.21317 -15.74159 -15.63389 -14.88810 -14.59640 -14.53914 -14.31864 -13.97119 -13.70584 -13.59609 -13.28156 -13.09111 -12.99624 -12.80064 -12.67986 -12.57304 -12.39503 -12.30729 -12.16392 -11.88208 -11.83154 -11.60819 -11.50793 -11.28058 -11.00975 -10.83458 -9.95285 -9.62408 -8.36429 -6.39803 0.76103 1.24897 1.31244 1.37248 1.40474 1.81030 2.26220 2.84949 3.09432 3.32274 3.69210 3.92330 4.02517 4.06658 4.26884 4.34814 4.39452 4.40448 4.52101 4.57997 4.60598 4.61493 4.67520 4.72033 4.74900 4.84067 4.95017 4.98086 5.06039 5.09235 5.13000 5.19245 5.21183 5.26464 5.44781 5.46173 5.52563 5.74853 5.82894 6.19518 6.56851 6.68302 7.26386 7.75394 8.78797 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.034280 B = 0.005076 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.613602 B = 5514.317241 C = 5692.033075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C 0.005 3.995 4 H 0.115 0.885 5 C -0.138 4.138 6 C 0.185 3.815 7 N -0.326 5.326 8 N -0.364 5.364 9 C 0.353 3.647 10 N -0.462 5.462 11 C 0.062 3.938 12 C 0.196 3.804 13 H 0.000 1.000 14 C -0.120 4.120 15 C -0.499 4.499 16 H 0.057 0.943 17 C 0.037 3.963 18 N -0.930 5.930 19 Si 0.918 3.082 20 H -0.276 1.276 21 H -0.262 1.262 22 H -0.276 1.276 23 N -0.467 5.467 24 C 0.071 3.929 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.269 0.731 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.942 -3.850 -0.168 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.016 4.016 4 H 0.133 0.867 5 C -0.196 4.196 6 C -0.083 4.083 7 N -0.165 5.165 8 N -0.208 5.208 9 C -0.004 4.004 10 N -0.188 5.188 11 C -0.086 4.086 12 C 0.090 3.910 13 H 0.018 0.982 14 C -0.179 4.179 15 C -0.537 4.537 16 H 0.075 0.925 17 C -0.163 4.163 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.201 1.201 21 H -0.186 1.186 22 H -0.201 1.201 23 N -0.159 5.159 24 C -0.070 4.070 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.367 -4.282 -0.911 22.791 hybrid contribution 0.993 0.258 -0.333 1.079 sum -21.374 -4.024 -1.244 21.785 Atomic orbital electron populations 1.21793 0.92720 1.02645 1.03124 1.21484 0.97730 0.93580 1.01963 1.19888 0.80576 0.99416 1.01671 0.86704 1.21828 1.03189 0.99501 0.95128 1.25580 0.98313 0.97553 0.86901 1.73807 0.95451 1.22071 1.25205 1.74557 1.15539 1.19494 1.11203 1.22702 0.86367 0.98540 0.92841 1.59168 1.06171 1.16502 1.36946 1.22067 0.97268 0.89803 0.99416 1.19661 0.90796 0.89352 0.91195 0.98238 1.21783 0.97982 0.98266 0.99829 1.20819 0.91944 1.45570 0.95393 0.92529 1.25495 0.95413 0.94360 1.01074 1.69958 1.01260 1.48285 1.37370 0.86180 0.78413 0.78603 0.82437 1.20139 1.18647 1.20125 1.46498 1.05258 1.42217 1.21970 1.22357 1.02109 0.97198 0.85326 0.91214 0.91310 0.92070 0.92559 0.92742 0.93291 0.88229 0.93321 0.89898 0.91219 0.96521 0.91705 0.93100 0.96195 0.92108 0.89082 0.86122 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.86 5.38 30.59 0.16 -1.69 16 3 C 0.01 0.10 2.76 -11.54 -0.03 0.07 16 4 H 0.11 1.42 7.08 -2.39 -0.02 1.40 16 5 C -0.14 -2.41 8.93 71.99 0.64 -1.76 16 6 C 0.19 5.53 6.58 137.64 0.91 6.43 16 7 N -0.33 -12.73 12.18 -49.54 -0.60 -13.34 16 8 N -0.36 -16.30 12.18 -58.00 -0.71 -17.01 16 9 C 0.35 14.18 5.09 260.11 1.32 15.51 16 10 N -0.46 -19.77 4.63 -711.00 -3.29 -23.06 16 11 C 0.06 2.56 9.09 127.69 1.16 3.72 16 12 C 0.20 9.53 1.57 44.17 0.07 9.60 16 13 H 0.00 -0.01 5.40 -2.39 -0.01 -0.02 16 14 C -0.12 -5.27 8.90 71.98 0.64 -4.63 16 15 C -0.50 -27.35 7.57 25.60 0.19 -27.15 16 16 H 0.06 3.37 8.05 -2.91 -0.02 3.35 16 17 C 0.04 2.08 5.47 84.66 0.46 2.54 16 18 N -0.93 -55.71 13.96 21.45 0.30 -55.41 16 19 Si 0.92 45.42 26.81 68.60 1.84 47.26 16 20 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.26 -12.80 6.77 99.48 0.67 -12.13 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 N -0.47 -14.38 3.21 -538.16 -1.73 -16.11 16 24 C 0.07 1.43 10.81 127.77 1.38 2.81 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.61 6.56 -2.39 -0.02 0.60 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.08 6.57 -2.38 -0.02 1.06 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 3.59 7.19 -2.39 -0.02 3.57 16 34 H 0.07 2.47 8.06 -2.39 -0.02 2.45 16 35 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.05 2.25 7.95 -2.39 -0.02 2.23 16 38 H 0.02 0.82 7.42 -2.39 -0.02 0.81 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.12 1.42 7.48 -2.39 -0.02 1.41 16 42 H 0.09 2.06 8.11 -2.39 -0.02 2.04 16 Total: -1.00 -71.47 337.20 4.37 -67.10 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.95 Total: 5.94 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 7.61 Total: 4.62 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.03 Total: -124.92 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.84 Total: 47.26 kcal Total: -71.47 4.37 -67.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290658461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.426 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds