Wall clock time and date at job start Mon Mar 30 2020 00:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47282 * 2 1 4 4 C 1.50704 * 109.46905 * 240.00106 * 2 1 3 5 5 H 1.07996 * 119.99972 * 239.99912 * 4 2 1 6 6 C 1.37879 * 120.00089 * 60.00217 * 4 2 1 7 7 N 1.31515 * 119.99862 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00173 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47319 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47533 * 119.99891 * 8 6 4 11 11 H 1.48500 * 109.47229 * 239.99868 * 8 6 4 12 12 N 1.46905 * 109.47319 * 120.00435 * 2 1 3 13 13 C 1.46896 * 110.99928 * 58.95176 * 12 2 1 14 14 C 1.38580 * 110.99597 * 295.00013 * 12 2 1 15 15 N 1.31220 * 126.47528 * 359.97288 * 14 12 2 16 16 N 1.28531 * 109.85735 * 180.02562 * 15 14 12 17 17 C 1.30283 * 110.05670 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.35022 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47031 * 6.12970 * 18 17 16 20 20 C 1.53004 * 109.47371 * 246.13133 * 18 17 16 21 21 C 1.52995 * 109.47492 * 126.12628 * 18 17 16 22 22 N 1.36452 * 126.47329 * 180.29173 * 14 12 2 23 23 C 1.46503 * 127.13573 * 359.97438 * 22 14 12 24 24 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47036 * 299.99710 * 1 2 3 26 26 H 1.09000 * 109.47226 * 59.99694 * 1 2 3 27 27 H 0.96996 * 120.00046 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47224 * 296.04999 * 13 12 2 29 29 H 1.08995 * 109.47308 * 56.04822 * 13 12 2 30 30 H 1.08994 * 109.47136 * 176.05176 * 13 12 2 31 31 H 1.09007 * 109.47044 * 300.00094 * 19 18 17 32 32 H 1.09004 * 109.47451 * 59.99611 * 19 18 17 33 33 H 1.09001 * 109.47826 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.46788 * 174.78729 * 20 18 17 35 35 H 1.09001 * 109.46850 * 294.78729 * 20 18 17 36 36 H 1.09000 * 109.47026 * 54.79072 * 20 18 17 37 37 H 1.09001 * 109.47437 * 300.00401 * 21 18 17 38 38 H 1.09001 * 109.47111 * 60.00282 * 21 18 17 39 39 H 1.08998 * 109.47182 * 180.02562 * 21 18 17 40 40 H 1.09002 * 109.47189 * 275.13602 * 23 22 14 41 41 H 1.09004 * 109.47218 * 35.13185 * 23 22 14 42 42 H 1.09002 * 109.47586 * 155.13444 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 7 2.0198 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6698 -0.0024 2.3490 15 7 0.9942 1.1209 2.4093 16 7 0.8503 1.4786 3.6354 17 6 1.4203 0.6118 4.4235 18 6 1.4722 0.6717 5.9285 19 6 0.6153 1.8390 6.4222 20 6 2.9196 0.8742 6.3813 21 6 0.9343 -0.6373 6.5098 22 7 1.9678 -0.3594 3.6318 23 6 2.7160 -1.5402 4.0702 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7081 1.1609 -3.4843 28 1 0.4420 -2.0731 1.3346 29 1 1.8167 -2.5950 0.3317 30 1 1.9617 -2.5869 2.1057 31 1 0.9984 2.7717 6.0080 32 1 -0.4159 1.6949 6.0996 33 1 0.6530 1.8827 7.5107 34 1 2.9463 1.0100 7.4625 35 1 3.5108 -0.0005 6.1102 36 1 3.3326 1.7573 5.8938 37 1 -0.0968 -0.7816 6.1873 38 1 1.5448 -1.4691 6.1581 39 1 0.9714 -0.5938 7.5983 40 1 2.0395 -2.3916 4.1458 41 1 3.5004 -1.7627 3.3467 42 1 3.1648 -1.3452 5.0442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290717467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:47 Heat of formation + Delta-G solvation = 89.759844 kcal Electronic energy + Delta-G solvation = -21577.551476 eV Core-core repulsion = 18594.751488 eV Total energy + Delta-G solvation = -2982.799988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.49488 -37.63089 -36.64524 -34.46462 -32.67185 -29.12407 -28.69031 -27.69688 -27.46607 -27.05459 -25.17425 -25.11248 -22.28413 -21.51152 -19.58443 -19.00840 -16.57590 -16.00752 -15.98151 -15.49690 -14.99863 -14.59204 -14.33012 -14.26893 -13.70431 -13.40195 -12.98362 -12.82112 -12.48429 -12.32376 -12.26410 -11.79013 -11.63087 -11.48770 -11.34530 -11.11766 -11.02890 -10.97812 -10.86697 -10.70189 -10.48427 -10.13984 -10.06330 -9.71826 -9.59808 -8.94151 -8.86321 -8.40145 -7.29783 -6.03023 -4.10308 2.32414 2.74446 3.28359 3.36130 3.39017 3.48472 4.31915 4.36162 4.63857 4.68554 4.72811 4.83498 5.09968 5.14087 5.28408 5.35921 5.39103 5.46885 5.57325 5.63705 5.70636 5.79397 5.82273 5.89016 5.99190 6.03277 6.15730 6.19768 6.37206 6.41582 6.52033 6.84475 7.04369 7.12428 7.22818 7.51160 7.67372 7.75979 7.99156 8.29001 8.46619 8.91725 9.45830 9.54553 11.03459 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039239 B = 0.004924 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.412162 B = 5685.102578 C = 6026.599760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.228 3.772 3 H 0.055 0.945 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.451 5.451 13 C 0.030 3.970 14 C 0.383 3.617 15 N -0.318 5.318 16 N -0.283 5.283 17 C 0.156 3.844 18 C 0.028 3.972 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.147 4.147 22 N -0.491 5.491 23 C 0.076 3.924 24 H 0.021 0.979 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.262 0.738 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -5.514 17.959 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.124 3.876 3 H 0.073 0.927 4 C -0.553 4.553 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.174 5.174 13 C -0.117 4.117 14 C 0.027 3.973 15 N -0.162 5.162 16 N -0.122 5.122 17 C -0.112 4.112 18 C 0.025 3.975 19 C -0.185 4.185 20 C -0.202 4.202 21 C -0.205 4.205 22 N -0.188 5.188 23 C -0.068 4.068 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.045 -4.207 17.261 17.884 hybrid contribution 0.392 -1.672 -0.599 1.819 sum 2.437 -5.879 16.662 17.836 Atomic orbital electron populations 1.22400 0.99104 0.98918 1.02632 1.19377 0.91244 0.94782 0.82183 0.92729 1.21070 1.31742 1.12961 0.89521 0.91799 1.24898 0.95026 0.95052 0.98940 1.69933 1.36114 1.22582 1.23525 0.86426 0.78523 0.79553 0.82778 1.19768 1.21046 1.20947 1.59307 1.55617 1.03038 0.99442 1.22437 0.98246 0.88189 1.02821 1.23321 0.95218 0.94786 0.83932 1.74855 1.18121 1.12331 1.10914 1.73915 1.18888 1.22722 0.96666 1.24307 1.02099 0.89473 0.95320 1.18861 0.96934 0.97435 0.84242 1.21674 0.99917 0.97167 0.99790 1.21985 0.94454 1.02283 1.01463 1.22023 1.01650 0.95839 1.00973 1.45954 1.44826 1.21751 1.06219 1.22154 0.96718 0.85934 1.01945 0.96030 0.94370 0.89092 0.92808 0.94778 0.88658 0.93364 0.91497 0.91854 0.92283 0.91454 0.92631 0.91920 0.92111 0.92499 0.91476 0.90913 0.89102 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 8.26 37.16 0.31 -4.13 16 2 C 0.23 5.97 2.03 -68.86 -0.14 5.83 16 3 H 0.05 1.64 7.95 -51.93 -0.41 1.23 16 4 C -0.51 -13.91 7.88 -34.44 -0.27 -14.18 16 5 H 0.06 1.68 6.77 -52.49 -0.36 1.32 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -25.46 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.45 -10.00 4.80 -176.08 -0.85 -10.85 16 13 C 0.03 0.57 8.62 60.06 0.52 1.09 16 14 C 0.38 8.19 6.75 -318.87 -2.15 6.04 16 15 N -0.32 -7.54 9.32 30.31 0.28 -7.26 16 16 N -0.28 -5.94 11.51 32.99 0.38 -5.56 16 17 C 0.16 2.60 6.35 -154.03 -0.98 1.62 16 18 C 0.03 0.33 0.75 -155.66 -0.12 0.21 16 19 C -0.13 -1.43 7.99 37.16 0.30 -1.13 16 20 C -0.14 -1.40 8.35 37.16 0.31 -1.09 16 21 C -0.15 -1.37 8.29 37.16 0.31 -1.06 16 22 N -0.49 -8.22 3.21 -121.46 -0.39 -8.61 16 23 C 0.08 0.87 7.88 59.85 0.47 1.35 16 24 H 0.02 0.52 6.48 -51.93 -0.34 0.18 16 25 H 0.04 0.98 5.88 -51.93 -0.31 0.67 16 26 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.03 0.66 6.51 -51.93 -0.34 0.32 16 29 H 0.09 1.83 6.41 -51.93 -0.33 1.50 16 30 H 0.05 0.71 5.43 -51.93 -0.28 0.43 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.49 5.82 -51.93 -0.30 0.19 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.48 5.56 -51.93 -0.29 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.72 7.54 -51.93 -0.39 0.33 16 41 H 0.09 1.06 7.86 -51.93 -0.41 0.65 16 42 H 0.09 0.77 4.60 -51.93 -0.24 0.53 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -32.21 317.63 -8.12 -40.33 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.40 Total: -0.20 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.54 Total: -3.82 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.05 Total: -57.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.21 -8.12 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290717467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.088 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds