Wall clock time and date at job start Mon Mar 30 2020 00:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47282 * 2 1 4 4 C 1.50704 * 109.46905 * 240.00106 * 2 1 3 5 5 H 1.07996 * 119.99972 * 239.99912 * 4 2 1 6 6 C 1.37879 * 120.00089 * 60.00217 * 4 2 1 7 7 N 1.31515 * 119.99862 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00173 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47319 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47533 * 119.99891 * 8 6 4 11 11 H 1.48500 * 109.47229 * 239.99868 * 8 6 4 12 12 N 1.46905 * 109.47319 * 120.00435 * 2 1 3 13 13 C 1.46896 * 110.99928 * 58.95176 * 12 2 1 14 14 C 1.38580 * 110.99597 * 295.00013 * 12 2 1 15 15 N 1.31220 * 126.47528 * 359.97288 * 14 12 2 16 16 N 1.28531 * 109.85735 * 180.02562 * 15 14 12 17 17 C 1.30283 * 110.05670 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.35022 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47031 * 6.12970 * 18 17 16 20 20 C 1.53004 * 109.47371 * 246.13133 * 18 17 16 21 21 C 1.52995 * 109.47492 * 126.12628 * 18 17 16 22 22 N 1.36452 * 126.47329 * 180.29173 * 14 12 2 23 23 C 1.46503 * 127.13573 * 359.97438 * 22 14 12 24 24 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47036 * 299.99710 * 1 2 3 26 26 H 1.09000 * 109.47226 * 59.99694 * 1 2 3 27 27 H 0.96996 * 120.00046 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47224 * 296.04999 * 13 12 2 29 29 H 1.08995 * 109.47308 * 56.04822 * 13 12 2 30 30 H 1.08994 * 109.47136 * 176.05176 * 13 12 2 31 31 H 1.09007 * 109.47044 * 300.00094 * 19 18 17 32 32 H 1.09004 * 109.47451 * 59.99611 * 19 18 17 33 33 H 1.09001 * 109.47826 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.46788 * 174.78729 * 20 18 17 35 35 H 1.09001 * 109.46850 * 294.78729 * 20 18 17 36 36 H 1.09000 * 109.47026 * 54.79072 * 20 18 17 37 37 H 1.09001 * 109.47437 * 300.00401 * 21 18 17 38 38 H 1.09001 * 109.47111 * 60.00282 * 21 18 17 39 39 H 1.08998 * 109.47182 * 180.02562 * 21 18 17 40 40 H 1.09002 * 109.47189 * 275.13602 * 23 22 14 41 41 H 1.09004 * 109.47218 * 35.13185 * 23 22 14 42 42 H 1.09002 * 109.47586 * 155.13444 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 7 2.0198 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6698 -0.0024 2.3490 15 7 0.9942 1.1209 2.4093 16 7 0.8503 1.4786 3.6354 17 6 1.4203 0.6118 4.4235 18 6 1.4722 0.6717 5.9285 19 6 0.6153 1.8390 6.4222 20 6 2.9196 0.8742 6.3813 21 6 0.9343 -0.6373 6.5098 22 7 1.9678 -0.3594 3.6318 23 6 2.7160 -1.5402 4.0702 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7081 1.1609 -3.4843 28 1 0.4420 -2.0731 1.3346 29 1 1.8167 -2.5950 0.3317 30 1 1.9617 -2.5869 2.1057 31 1 0.9984 2.7717 6.0080 32 1 -0.4159 1.6949 6.0996 33 1 0.6530 1.8827 7.5107 34 1 2.9463 1.0100 7.4625 35 1 3.5108 -0.0005 6.1102 36 1 3.3326 1.7573 5.8938 37 1 -0.0968 -0.7816 6.1873 38 1 1.5448 -1.4691 6.1581 39 1 0.9714 -0.5938 7.5983 40 1 2.0395 -2.3916 4.1458 41 1 3.5004 -1.7627 3.3467 42 1 3.1648 -1.3452 5.0442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290717467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:46 Heat of formation + Delta-G solvation = 70.205698 kcal Electronic energy + Delta-G solvation = -21578.399407 eV Core-core repulsion = 18594.751488 eV Total energy + Delta-G solvation = -2983.647919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.95599 -39.23257 -37.80511 -35.84641 -34.63135 -30.93679 -30.33090 -28.82373 -28.20234 -27.97999 -27.30249 -26.67051 -23.62301 -23.21303 -21.16571 -20.26050 -18.37079 -17.59458 -17.37606 -17.15652 -16.42601 -16.13650 -15.61662 -15.16806 -15.05337 -14.87798 -14.53380 -14.07140 -13.82234 -13.40169 -13.14642 -13.11367 -13.03066 -12.93409 -12.71296 -12.67274 -12.59934 -12.39562 -12.20372 -12.08319 -11.97521 -11.96463 -11.76765 -11.27030 -10.98922 -10.87527 -10.55752 -10.50805 -8.97786 -8.13005 -6.28526 0.92010 1.39662 1.44468 1.46678 1.58061 1.96286 2.41903 3.03313 3.16904 3.31696 3.71296 3.80242 3.97934 4.10289 4.23297 4.28186 4.33260 4.48902 4.53343 4.64794 4.67080 4.73691 4.84287 4.85541 4.96852 4.97369 5.00170 5.01606 5.07202 5.09428 5.16537 5.23315 5.38360 5.43783 5.50602 5.60051 5.63647 5.88360 6.08876 6.20259 6.59660 6.81386 7.40585 7.94853 8.94208 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039239 B = 0.004924 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.412162 B = 5685.102578 C = 6026.599760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.241 3.759 3 H 0.002 0.998 4 C -0.524 4.524 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.971 3.029 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.455 5.455 13 C 0.033 3.967 14 C 0.362 3.638 15 N -0.371 5.371 16 N -0.333 5.333 17 C 0.182 3.818 18 C 0.024 3.976 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.143 4.143 22 N -0.482 5.482 23 C 0.062 3.938 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -8.228 20.425 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.135 3.865 3 H 0.020 0.980 4 C -0.562 4.562 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.177 5.177 13 C -0.114 4.114 14 C 0.004 3.996 15 N -0.215 5.215 16 N -0.171 5.171 17 C -0.087 4.087 18 C 0.021 3.979 19 C -0.184 4.184 20 C -0.198 4.198 21 C -0.200 4.200 22 N -0.178 5.178 23 C -0.079 4.079 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.475 -6.949 19.765 21.237 hybrid contribution -0.046 -0.791 -1.184 1.425 sum 3.428 -7.740 18.581 20.419 Atomic orbital electron populations 1.22162 0.99392 0.98785 1.00808 1.18920 0.90789 0.92561 0.84245 0.98037 1.21358 1.31727 1.13132 0.90019 0.90905 1.25820 0.95067 0.95671 1.02275 1.70100 1.37365 1.24213 1.24241 0.85304 0.78025 0.78591 0.78461 1.18183 1.20601 1.21011 1.59183 1.55881 1.04106 0.98579 1.22521 0.97809 0.86499 1.04542 1.23188 0.96300 0.94826 0.85297 1.74691 1.19961 1.13977 1.12892 1.73818 1.21784 1.25100 0.96372 1.25434 0.98508 0.87525 0.97271 1.19272 0.98845 0.99188 0.80553 1.21693 0.98624 0.96113 1.02020 1.21986 0.92484 1.01910 1.03394 1.22027 1.00737 0.94336 1.02933 1.46168 1.44400 1.22913 1.04287 1.22637 0.96997 0.84701 1.03590 0.95069 0.95028 0.91946 0.92823 0.95858 0.89184 0.88984 0.93592 0.93623 0.88514 0.88055 0.91286 0.94100 0.93620 0.91131 0.88154 0.88409 0.88970 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.28 8.26 71.98 0.59 -7.68 16 2 C 0.24 13.15 2.03 44.17 0.09 13.24 16 3 H 0.00 0.11 7.95 -2.39 -0.02 0.09 16 4 C -0.52 -28.83 7.88 25.60 0.20 -28.63 16 5 H 0.07 3.80 6.77 -2.91 -0.02 3.78 16 6 C 0.01 0.61 5.30 84.65 0.45 1.05 16 7 N -0.92 -55.02 11.32 21.45 0.24 -54.78 16 8 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.45 -20.44 4.80 -711.00 -3.42 -23.86 16 13 C 0.03 1.19 8.62 127.69 1.10 2.29 16 14 C 0.36 15.75 6.75 260.11 1.76 17.51 16 15 N -0.37 -18.56 9.32 -58.00 -0.54 -19.10 16 16 N -0.33 -14.53 11.51 -49.54 -0.57 -15.10 16 17 C 0.18 5.95 6.35 137.64 0.87 6.82 16 18 C 0.02 0.50 0.75 -52.93 -0.04 0.46 16 19 C -0.13 -2.64 7.99 71.98 0.57 -2.07 16 20 C -0.14 -2.19 8.35 71.98 0.60 -1.59 16 21 C -0.14 -2.05 8.29 71.98 0.60 -1.46 16 22 N -0.48 -15.50 3.21 -538.18 -1.73 -17.23 16 23 C 0.06 1.19 7.88 127.77 1.01 2.19 16 24 H 0.03 1.56 6.48 -2.39 -0.02 1.55 16 25 H 0.03 1.72 5.88 -2.39 -0.01 1.70 16 26 H 0.06 3.73 6.07 -2.39 -0.01 3.72 16 27 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.02 0.88 6.51 -2.38 -0.02 0.86 16 29 H 0.09 3.34 6.41 -2.39 -0.02 3.33 16 30 H 0.09 2.47 5.43 -2.39 -0.01 2.45 16 31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.89 5.82 -2.39 -0.01 0.88 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.83 5.56 -2.39 -0.01 0.82 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.46 7.54 -2.39 -0.02 1.44 16 41 H 0.09 1.83 7.86 -2.39 -0.02 1.81 16 42 H 0.12 1.52 4.60 -2.39 -0.01 1.51 16 Total: -1.00 -76.11 317.63 4.83 -71.28 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.01 Total: 11.25 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 7.80 Total: 2.14 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.01 Total: -130.06 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.11 4.83 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290717467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.483 kcal (2) G-P(sol) polarization free energy of solvation -76.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds