Wall clock time and date at job start Mon Mar 30 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30284 * 126.34634 * 2 1 4 4 N 1.28530 * 110.05514 * 179.76398 * 3 2 1 5 5 C 1.31227 * 109.85701 * 0.44716 * 4 3 2 6 6 N 1.38571 * 126.47296 * 179.81894 * 5 4 3 7 7 C 1.46903 * 111.00227 * 250.56117 * 6 5 4 8 8 C 1.46900 * 111.00072 * 14.52255 * 6 5 4 9 9 H 1.08994 * 109.47564 * 54.99142 * 8 6 5 10 10 C 1.53008 * 109.46709 * 294.99113 * 8 6 5 11 11 C 1.50699 * 109.46981 * 174.99938 * 8 6 5 12 12 H 1.08001 * 120.00386 * 359.97438 * 11 8 6 13 13 C 1.37883 * 119.99933 * 179.97438 * 11 8 6 14 14 N 1.31519 * 119.99854 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00146 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47147 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47129 * 119.99949 * 15 13 11 18 18 H 1.48503 * 109.47130 * 240.00421 * 15 13 11 19 19 N 1.36461 * 107.05121 * 359.56645 * 5 4 3 20 20 C 1.46496 * 127.13361 * 180.24074 * 19 5 4 21 21 C 1.52999 * 109.47074 * 95.53921 * 20 19 5 22 22 C 1.53004 * 109.46830 * 174.99792 * 21 20 19 23 23 C 1.53000 * 109.47038 * 294.99475 * 21 20 19 24 24 H 1.08999 * 109.46952 * 269.95863 * 1 2 3 25 25 H 1.09000 * 109.46406 * 29.95974 * 1 2 3 26 26 H 1.09003 * 109.47136 * 149.95993 * 1 2 3 27 27 H 1.08998 * 109.47005 * 54.51618 * 7 6 5 28 28 H 1.09007 * 109.46576 * 174.51626 * 7 6 5 29 29 H 1.08998 * 109.46988 * 294.51200 * 7 6 5 30 30 H 1.08994 * 109.47131 * 300.00294 * 10 8 6 31 31 H 1.09007 * 109.46655 * 60.00256 * 10 8 6 32 32 H 1.08999 * 109.46771 * 180.02562 * 10 8 6 33 33 H 0.96998 * 119.99604 * 180.02562 * 14 13 11 34 34 H 1.09008 * 109.46952 * 215.53614 * 20 19 5 35 35 H 1.09003 * 109.47104 * 335.53396 * 20 19 5 36 36 H 1.09000 * 109.47129 * 54.99969 * 21 20 19 37 37 H 1.09000 * 109.47120 * 60.00172 * 22 21 20 38 38 H 1.08999 * 109.46665 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46790 * 299.99393 * 22 21 20 40 40 H 1.08999 * 109.47367 * 179.97438 * 23 21 20 41 41 H 1.09000 * 109.47564 * 300.00228 * 23 21 20 42 42 H 1.08999 * 109.47193 * 60.00379 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 0.0050 5 6 3.5946 -0.6209 -0.0012 6 7 4.7580 -1.3737 -0.0021 7 6 4.9551 -2.0366 -1.2981 8 6 5.9204 -0.5468 0.3485 9 1 5.7403 -0.0529 1.3034 10 6 6.1420 0.5080 -0.7374 11 6 7.1436 -1.4202 0.4575 12 1 7.0654 -2.4833 0.2840 13 6 8.3629 -0.8620 0.7786 14 7 8.4583 0.4326 0.9893 15 14 9.8790 -1.9447 0.9143 16 1 9.5073 -3.3546 0.6331 17 1 10.8976 -1.4955 -0.0684 18 1 10.4373 -1.8449 2.2868 19 7 2.3174 -1.1014 -0.0008 20 6 1.9010 -2.5060 -0.0015 21 6 1.6233 -2.9563 1.4342 22 6 1.0697 -4.3826 1.4232 23 6 2.9231 -2.9200 2.2404 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3632 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 4.9275 -1.2930 -2.0945 28 1 5.9216 -2.5407 -1.3050 29 1 4.1627 -2.7681 -1.4563 30 1 6.3221 0.0142 -1.6923 31 1 5.2572 1.1398 -0.8163 32 1 7.0048 1.1213 -0.4775 33 1 9.3161 0.8253 1.2149 34 1 0.9955 -2.6162 -0.5984 35 1 2.6943 -3.1199 -0.4279 36 1 0.8939 -2.2869 1.8903 37 1 1.7991 -5.0519 0.9671 38 1 0.8723 -4.7035 2.4460 39 1 0.1436 -4.4084 0.8488 40 1 2.7253 -3.2403 3.2633 41 1 3.6525 -3.5893 1.7843 42 1 3.3176 -1.9039 2.2483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291717988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:21 Heat of formation + Delta-G solvation = 86.057273 kcal Electronic energy + Delta-G solvation = -21779.572408 eV Core-core repulsion = 18796.611865 eV Total energy + Delta-G solvation = -2982.960543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.45948 -37.28705 -36.84499 -33.16441 -32.84074 -31.28104 -28.69113 -27.54658 -27.10062 -26.52415 -25.11066 -24.86329 -21.64460 -21.06296 -19.79693 -19.42343 -16.74558 -16.04534 -15.91936 -15.45616 -15.07291 -14.59253 -14.09189 -13.89396 -13.47768 -13.36459 -13.00998 -12.87450 -12.57864 -12.31746 -12.26407 -12.03175 -11.53250 -11.40524 -11.35370 -11.15321 -10.95710 -10.90938 -10.79177 -10.67018 -10.32793 -10.12998 -10.03678 -9.68742 -9.58907 -8.80704 -8.70695 -8.38476 -7.37081 -6.01482 -4.08601 2.28931 2.74522 3.28691 3.36535 3.39230 3.45469 4.35205 4.55626 4.64696 4.66920 4.72775 4.96292 5.09567 5.22262 5.28067 5.30827 5.47301 5.53155 5.67912 5.68566 5.75291 5.82239 5.92100 5.98644 6.07470 6.10436 6.26711 6.29217 6.42587 6.55541 6.62100 6.87983 7.08656 7.20323 7.36934 7.56240 7.71226 7.78380 8.00675 8.34355 8.51581 8.93582 9.42657 9.55910 11.04702 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.006368 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.111943 B = 4395.843204 C = 5196.926270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.145 3.855 3 N -0.293 5.293 4 N -0.315 5.315 5 C 0.383 3.617 6 N -0.454 5.454 7 C 0.036 3.964 8 C 0.230 3.770 9 H 0.047 0.953 10 C -0.179 4.179 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.063 3.937 14 N -0.884 5.884 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 N -0.482 5.482 20 C 0.116 3.884 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.019 0.981 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.261 0.739 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 -8.626 -2.039 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 N -0.133 5.133 4 N -0.159 5.159 5 C 0.028 3.972 6 N -0.178 5.178 7 C -0.112 4.112 8 C 0.126 3.874 9 H 0.065 0.935 10 C -0.239 4.239 11 C -0.550 4.550 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.726 3.274 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 N -0.178 5.178 20 C -0.008 4.008 21 C -0.127 4.127 22 C -0.201 4.201 23 C -0.200 4.200 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.900 -7.415 -1.631 16.723 hybrid contribution 0.655 -1.389 -0.373 1.580 sum -14.245 -8.804 -2.005 16.865 Atomic orbital electron populations 1.20039 0.84657 1.03529 1.03161 1.24510 0.96132 0.82987 1.08612 1.73957 0.97273 1.24424 1.17614 1.74864 1.10205 1.07619 1.23189 1.23197 0.84969 0.89269 0.99798 1.59375 1.00282 1.29818 1.28304 1.22366 1.02816 0.97585 0.88398 1.19333 0.83322 0.89480 0.95282 0.93485 1.22555 1.03120 1.00745 0.97446 1.21065 0.91673 0.94095 1.48202 0.91811 1.24899 0.98821 0.95017 0.95209 1.69941 1.25052 1.10132 1.47079 0.86448 0.82784 0.80516 0.77659 1.19783 1.21072 1.21021 1.46244 1.06155 1.07738 1.57652 1.21961 1.01606 0.78925 0.98288 1.21463 0.99146 0.97359 0.94752 1.21768 1.00599 0.95435 1.02251 1.21784 0.95831 1.03667 0.98759 0.90440 0.89355 0.91244 0.95050 0.88514 0.93725 0.96202 0.92897 0.89459 0.92872 0.89815 0.88348 0.91062 0.92178 0.92078 0.92738 0.93147 0.91647 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.26 36.01 0.37 -0.20 16 2 C 0.14 2.39 8.07 -154.02 -1.24 1.14 16 3 N -0.29 -6.12 12.18 32.99 0.40 -5.72 16 4 N -0.32 -7.36 8.96 30.32 0.27 -7.08 16 5 C 0.38 7.96 5.42 -318.86 -1.73 6.23 16 6 N -0.45 -9.71 4.70 -176.07 -0.83 -10.54 16 7 C 0.04 0.67 8.52 60.07 0.51 1.18 16 8 C 0.23 5.91 2.08 -68.86 -0.14 5.77 16 9 H 0.05 1.39 8.11 -51.93 -0.42 0.97 16 10 C -0.18 -4.64 8.28 37.16 0.31 -4.33 16 11 C -0.51 -13.65 7.80 -34.44 -0.27 -13.92 16 12 H 0.06 1.65 6.81 -52.49 -0.36 1.30 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 14 N -0.88 -25.42 11.32 55.43 0.63 -24.79 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 N -0.48 -7.91 2.51 -114.08 -0.29 -8.20 16 20 C 0.12 1.39 5.33 -4.04 -0.02 1.37 16 21 C -0.11 -1.20 3.13 -90.62 -0.28 -1.49 16 22 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 23 C -0.14 -2.04 8.96 37.16 0.33 -1.71 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.56 7.39 -51.93 -0.38 0.17 16 27 H 0.03 0.61 6.80 -51.93 -0.35 0.25 16 28 H 0.10 1.87 6.29 -51.93 -0.33 1.55 16 29 H 0.04 0.68 6.07 -51.93 -0.32 0.36 16 30 H 0.02 0.48 6.60 -51.93 -0.34 0.13 16 31 H 0.05 1.37 5.39 -51.93 -0.28 1.09 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.08 0.77 7.43 -51.92 -0.39 0.38 16 35 H 0.10 1.22 5.89 -51.93 -0.31 0.91 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.15 6.75 -51.93 -0.35 0.80 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -31.62 325.91 -8.50 -40.11 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.65 Total: 0.54 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.92 Total: -5.18 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.19 Total: -56.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.62 -8.50 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291717988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.170 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds