Wall clock time and date at job start Mon Mar 30 2020 00:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30284 * 126.34634 * 2 1 4 4 N 1.28530 * 110.05514 * 179.76398 * 3 2 1 5 5 C 1.31227 * 109.85701 * 0.44716 * 4 3 2 6 6 N 1.38571 * 126.47296 * 179.81894 * 5 4 3 7 7 C 1.46903 * 111.00227 * 250.56117 * 6 5 4 8 8 C 1.46900 * 111.00072 * 14.52255 * 6 5 4 9 9 H 1.08994 * 109.47564 * 54.99142 * 8 6 5 10 10 C 1.53008 * 109.46709 * 294.99113 * 8 6 5 11 11 C 1.50699 * 109.46981 * 174.99938 * 8 6 5 12 12 H 1.08001 * 120.00386 * 359.97438 * 11 8 6 13 13 C 1.37883 * 119.99933 * 179.97438 * 11 8 6 14 14 N 1.31519 * 119.99854 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00146 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47147 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47129 * 119.99949 * 15 13 11 18 18 H 1.48503 * 109.47130 * 240.00421 * 15 13 11 19 19 N 1.36461 * 107.05121 * 359.56645 * 5 4 3 20 20 C 1.46496 * 127.13361 * 180.24074 * 19 5 4 21 21 C 1.52999 * 109.47074 * 95.53921 * 20 19 5 22 22 C 1.53004 * 109.46830 * 174.99792 * 21 20 19 23 23 C 1.53000 * 109.47038 * 294.99475 * 21 20 19 24 24 H 1.08999 * 109.46952 * 269.95863 * 1 2 3 25 25 H 1.09000 * 109.46406 * 29.95974 * 1 2 3 26 26 H 1.09003 * 109.47136 * 149.95993 * 1 2 3 27 27 H 1.08998 * 109.47005 * 54.51618 * 7 6 5 28 28 H 1.09007 * 109.46576 * 174.51626 * 7 6 5 29 29 H 1.08998 * 109.46988 * 294.51200 * 7 6 5 30 30 H 1.08994 * 109.47131 * 300.00294 * 10 8 6 31 31 H 1.09007 * 109.46655 * 60.00256 * 10 8 6 32 32 H 1.08999 * 109.46771 * 180.02562 * 10 8 6 33 33 H 0.96998 * 119.99604 * 180.02562 * 14 13 11 34 34 H 1.09008 * 109.46952 * 215.53614 * 20 19 5 35 35 H 1.09003 * 109.47104 * 335.53396 * 20 19 5 36 36 H 1.09000 * 109.47129 * 54.99969 * 21 20 19 37 37 H 1.09000 * 109.47120 * 60.00172 * 22 21 20 38 38 H 1.08999 * 109.46665 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46790 * 299.99393 * 22 21 20 40 40 H 1.08999 * 109.47367 * 179.97438 * 23 21 20 41 41 H 1.09000 * 109.47564 * 300.00228 * 23 21 20 42 42 H 1.08999 * 109.47193 * 60.00379 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 0.0050 5 6 3.5946 -0.6209 -0.0012 6 7 4.7580 -1.3737 -0.0021 7 6 4.9551 -2.0366 -1.2981 8 6 5.9204 -0.5468 0.3485 9 1 5.7403 -0.0529 1.3034 10 6 6.1420 0.5080 -0.7374 11 6 7.1436 -1.4202 0.4575 12 1 7.0654 -2.4833 0.2840 13 6 8.3629 -0.8620 0.7786 14 7 8.4583 0.4326 0.9893 15 14 9.8790 -1.9447 0.9143 16 1 9.5073 -3.3546 0.6331 17 1 10.8976 -1.4955 -0.0684 18 1 10.4373 -1.8449 2.2868 19 7 2.3174 -1.1014 -0.0008 20 6 1.9010 -2.5060 -0.0015 21 6 1.6233 -2.9563 1.4342 22 6 1.0697 -4.3826 1.4232 23 6 2.9231 -2.9200 2.2404 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3632 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 4.9275 -1.2930 -2.0945 28 1 5.9216 -2.5407 -1.3050 29 1 4.1627 -2.7681 -1.4563 30 1 6.3221 0.0142 -1.6923 31 1 5.2572 1.1398 -0.8163 32 1 7.0048 1.1213 -0.4775 33 1 9.3161 0.8253 1.2149 34 1 0.9955 -2.6162 -0.5984 35 1 2.6943 -3.1199 -0.4279 36 1 0.8939 -2.2869 1.8903 37 1 1.7991 -5.0519 0.9671 38 1 0.8723 -4.7035 2.4460 39 1 0.1436 -4.4084 0.8488 40 1 2.7253 -3.2403 3.2633 41 1 3.6525 -3.5893 1.7843 42 1 3.3176 -1.9039 2.2483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291717988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:20 Heat of formation + Delta-G solvation = 67.427962 kcal Electronic energy + Delta-G solvation = -21780.380236 eV Core-core repulsion = 18796.611865 eV Total energy + Delta-G solvation = -2983.768371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.89730 -39.03790 -37.91349 -34.90009 -34.28897 -32.58919 -30.62736 -28.88142 -28.09485 -27.57378 -27.14773 -26.46002 -23.38647 -22.20380 -21.16390 -20.87464 -18.38392 -17.77371 -17.28854 -17.16162 -16.44432 -16.03857 -15.55498 -15.09874 -14.88589 -14.76325 -14.40668 -14.05458 -13.69758 -13.51307 -13.33048 -13.16297 -13.07681 -12.97125 -12.84442 -12.69801 -12.55732 -12.47566 -12.20621 -12.01770 -11.94843 -11.88476 -11.65321 -11.34887 -10.86799 -10.77555 -10.49555 -10.32267 -9.02746 -8.11523 -6.26558 0.92271 1.41685 1.43951 1.47337 1.57437 1.95858 2.42144 3.08247 3.18243 3.58336 3.61655 3.81289 4.04337 4.10108 4.17558 4.26006 4.43482 4.53545 4.62872 4.65478 4.72484 4.76981 4.81538 4.91156 4.97632 4.99324 5.03208 5.07145 5.15215 5.16851 5.22364 5.32390 5.43830 5.45791 5.49894 5.64716 5.67960 5.91141 6.13397 6.24569 6.66628 6.83828 7.42321 7.94284 8.95328 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.006368 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.111943 B = 4395.843204 C = 5196.926270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.170 3.830 3 N -0.345 5.345 4 N -0.369 5.369 5 C 0.366 3.634 6 N -0.450 5.450 7 C 0.038 3.962 8 C 0.244 3.756 9 H -0.006 1.006 10 C -0.162 4.162 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.010 3.990 14 N -0.921 5.921 15 Si 0.969 3.031 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.284 1.284 19 N -0.472 5.472 20 C 0.105 3.895 21 C -0.099 4.099 22 C -0.135 4.135 23 C -0.140 4.140 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.019 0.981 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.262 0.738 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.911 -11.652 -2.778 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 N -0.184 5.184 4 N -0.212 5.212 5 C 0.008 3.992 6 N -0.174 5.174 7 C -0.109 4.109 8 C 0.138 3.862 9 H 0.012 0.988 10 C -0.221 4.221 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.189 4.189 14 N -0.560 5.560 15 Si 0.794 3.206 16 H -0.182 1.182 17 H -0.207 1.207 18 H -0.211 1.211 19 N -0.168 5.168 20 C -0.016 4.016 21 C -0.119 4.119 22 C -0.193 4.193 23 C -0.197 4.197 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.038 0.962 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -17.397 -10.471 -2.380 20.444 hybrid contribution 1.264 -0.443 -0.110 1.344 sum -16.133 -10.914 -2.490 19.636 Atomic orbital electron populations 1.20393 0.79923 1.05885 1.05118 1.25679 0.98254 0.81816 1.04100 1.73846 0.96986 1.26692 1.20885 1.74667 1.12174 1.09559 1.24822 1.23030 0.86179 0.89010 1.00974 1.59229 0.99352 1.28953 1.29848 1.22425 1.04026 0.97746 0.86656 1.18863 0.85063 0.89568 0.92698 0.98768 1.22346 1.01524 1.00468 0.97786 1.21348 0.92111 0.94505 1.47794 0.90954 1.25810 1.02111 0.96230 0.94763 1.70110 1.25767 1.12103 1.48051 0.85338 0.78608 0.79257 0.77389 1.18176 1.20734 1.21053 1.46444 1.04301 1.09587 1.56442 1.22427 1.03359 0.76159 0.99620 1.21428 0.97296 0.99654 0.93473 1.21719 1.01580 0.92815 1.03149 1.21734 0.97492 1.00302 1.00197 0.88472 0.88449 0.87436 0.96219 0.89263 0.89629 0.95543 0.93303 0.92412 0.92933 0.85338 0.88542 0.90579 0.92094 0.91664 0.90057 0.92194 0.92591 0.96576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.92 10.26 71.24 0.73 -0.18 16 2 C 0.17 5.32 8.07 137.65 1.11 6.43 16 3 N -0.34 -14.72 12.18 -49.53 -0.60 -15.32 16 4 N -0.37 -18.04 8.96 -58.00 -0.52 -18.55 16 5 C 0.37 15.52 5.42 260.11 1.41 16.93 16 6 N -0.45 -19.77 4.70 -710.98 -3.34 -23.11 16 7 C 0.04 1.41 8.52 127.69 1.09 2.50 16 8 C 0.24 13.22 2.08 44.17 0.09 13.31 16 9 H -0.01 -0.36 8.11 -2.39 -0.02 -0.38 16 10 C -0.16 -8.85 8.28 71.98 0.60 -8.25 16 11 C -0.52 -28.43 7.80 25.60 0.20 -28.23 16 12 H 0.07 3.76 6.81 -2.91 -0.02 3.74 16 13 C 0.01 0.55 5.30 84.66 0.45 1.00 16 14 N -0.92 -55.23 11.32 21.45 0.24 -54.99 16 15 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 N -0.47 -14.80 2.51 -514.84 -1.29 -16.10 16 20 C 0.11 2.15 5.33 86.38 0.46 2.61 16 21 C -0.10 -1.90 3.13 -10.79 -0.03 -1.93 16 22 C -0.13 -1.64 9.19 71.98 0.66 -0.98 16 23 C -0.14 -3.90 8.96 71.98 0.64 -3.25 16 24 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.11 1.04 7.39 -2.39 -0.02 1.03 16 27 H 0.02 0.75 6.80 -2.39 -0.02 0.74 16 28 H 0.09 3.41 6.29 -2.38 -0.01 3.40 16 29 H 0.09 2.42 6.07 -2.39 -0.01 2.41 16 30 H 0.03 1.34 6.60 -2.39 -0.02 1.32 16 31 H 0.05 2.69 5.39 -2.38 -0.01 2.68 16 32 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.13 1.55 7.43 -2.38 -0.02 1.53 16 35 H 0.10 2.04 5.89 -2.39 -0.01 2.03 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.01 0.58 6.75 -2.39 -0.02 0.56 16 Total: -1.00 -75.38 325.91 4.92 -70.46 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.00 Total: 12.14 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 7.41 Total: -0.05 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.51 Total: -128.08 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -75.38 4.92 -70.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291717988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.886 kcal (2) G-P(sol) polarization free energy of solvation -75.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds