Wall clock time and date at job start Mon Mar 30 2020 00:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30715 * 125.52416 * 2 1 4 4 N 1.40447 * 106.78959 * 179.78644 * 3 2 1 5 5 H 0.96996 * 126.82284 * 180.26128 * 4 3 2 6 6 C 1.34432 * 106.35391 * 0.40840 * 4 3 2 7 7 C 1.50697 * 125.96351 * 179.85735 * 6 4 3 8 8 N 1.46901 * 109.47242 * 94.71391 * 7 6 4 9 9 C 1.46902 * 110.99967 * 66.04868 * 8 7 6 10 10 C 1.50696 * 109.47010 * 199.92616 * 9 8 7 11 11 H 1.07996 * 120.00112 * 1.63337 * 10 9 8 12 12 C 1.37874 * 120.00209 * 181.63502 * 10 9 8 13 13 N 1.31523 * 119.99825 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00540 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47226 * 119.99645 * 14 12 10 17 17 H 1.48504 * 109.47092 * 239.99987 * 14 12 10 18 18 C 1.46900 * 110.99812 * 190.00333 * 8 7 6 19 19 C 1.52997 * 109.47542 * 71.39170 * 18 8 7 20 20 C 1.52993 * 109.47515 * 181.30753 * 19 18 8 21 21 C 1.53002 * 109.47550 * 174.99853 * 20 19 18 22 22 C 1.53012 * 109.46968 * 294.99800 * 20 19 18 23 23 N 1.30839 * 108.07692 * 359.59225 * 6 4 3 24 24 H 1.09001 * 109.46912 * 269.95092 * 1 2 3 25 25 H 1.08995 * 109.46985 * 29.95216 * 1 2 3 26 26 H 1.09003 * 109.47019 * 149.95324 * 1 2 3 27 27 H 1.08998 * 109.46753 * 334.71268 * 7 6 4 28 28 H 1.09003 * 109.47433 * 214.71544 * 7 6 4 29 29 H 1.08998 * 109.46834 * 319.92582 * 9 8 7 30 30 H 1.08994 * 109.46893 * 79.92427 * 9 8 7 31 31 H 0.96996 * 119.99809 * 179.97438 * 13 12 10 32 32 H 1.09010 * 109.46818 * 191.39072 * 18 8 7 33 33 H 1.09002 * 109.47340 * 311.38678 * 18 8 7 34 34 H 1.08999 * 109.46846 * 301.30648 * 19 18 8 35 35 H 1.09003 * 109.47044 * 61.30323 * 19 18 8 36 36 H 1.08996 * 109.47466 * 54.99253 * 20 19 18 37 37 H 1.09003 * 109.46642 * 59.99522 * 21 20 19 38 38 H 1.08995 * 109.47340 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47049 * 300.00273 * 21 20 19 40 40 H 1.08998 * 109.46908 * 180.02562 * 22 20 19 41 41 H 1.08996 * 109.46581 * 299.99995 * 22 20 19 42 42 H 1.09000 * 109.46730 * 59.99808 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2666 1.0639 0.0000 4 7 3.5966 0.6128 0.0050 5 1 4.3965 1.1614 0.0098 6 6 3.5408 -0.7304 -0.0014 7 6 4.7227 -1.6653 -0.0025 8 7 5.0323 -2.0648 1.3769 9 6 3.9469 -2.8744 1.9466 10 6 4.0425 -2.8555 3.4504 11 1 4.8146 -2.2767 3.9353 12 6 3.1442 -3.5773 4.2074 13 7 2.2036 -4.2820 3.6170 14 14 3.2621 -3.5535 6.0715 15 1 4.3981 -2.6909 6.4846 16 1 1.9998 -3.0166 6.6405 17 1 3.4824 -4.9345 6.5712 18 6 6.3134 -2.7807 1.4426 19 6 7.4606 -1.7961 1.2074 20 6 8.7929 -2.5472 1.2435 21 6 9.9294 -1.5875 0.8853 22 6 9.0236 -3.1093 2.6478 23 7 2.2812 -1.0844 -0.0009 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5146 27 1 5.5853 -1.1598 -0.4366 28 1 4.4854 -2.5505 -0.5926 29 1 2.9861 -2.4623 1.6384 30 1 4.0334 -3.9006 1.5898 31 1 1.5718 -4.7901 4.1495 32 1 6.4235 -3.2387 2.4256 33 1 6.3365 -3.5553 0.6762 34 1 7.3376 -1.3209 0.2342 35 1 7.4515 -1.0346 1.9872 36 1 8.7682 -3.3657 0.5241 37 1 9.9541 -0.7690 1.6048 38 1 10.8786 -2.1226 0.9115 39 1 9.7651 -1.1870 -0.1150 40 1 9.9730 -3.6441 2.6736 41 1 9.0483 -2.2908 3.3671 42 1 8.2139 -3.7930 2.9029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292536585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:57 Heat of formation + Delta-G solvation = 68.673757 kcal Electronic energy + Delta-G solvation = -20686.483833 eV Core-core repulsion = 17702.769484 eV Total energy + Delta-G solvation = -2983.714349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67171 -37.66301 -35.51391 -33.01889 -32.44352 -31.41090 -29.00216 -28.49519 -27.23290 -26.93171 -25.00768 -22.63914 -21.42083 -20.09016 -19.92169 -19.66565 -17.38416 -16.36052 -15.49957 -15.35562 -14.73743 -14.50534 -14.23809 -13.86054 -13.55965 -13.38873 -13.02825 -12.60058 -12.36843 -12.33871 -12.10095 -12.02306 -11.76784 -11.61423 -11.47428 -11.13377 -11.01948 -10.76606 -10.63150 -10.44986 -10.25944 -10.06409 -9.78861 -9.56497 -9.44883 -9.13483 -9.01860 -8.34082 -7.40474 -5.94473 -3.95551 2.01099 3.04242 3.32905 3.34197 3.40909 3.45210 4.40389 4.47406 4.80733 4.97513 5.05662 5.10591 5.21715 5.26942 5.40160 5.53145 5.67882 5.72288 5.79267 5.83692 5.85456 5.90513 5.96440 6.00282 6.03942 6.12692 6.15411 6.29519 6.37387 6.40296 6.66841 6.69245 6.74769 6.89843 7.27284 7.41663 7.45754 7.83830 8.15916 8.18881 8.53937 8.59680 9.11568 9.67025 11.15700 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.007880 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.610797 B = 3552.277716 C = 5846.303111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.225 3.775 3 N -0.332 5.332 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.315 3.685 7 C 0.124 3.876 8 N -0.532 5.532 9 C 0.180 3.820 10 C -0.504 4.504 11 H 0.060 0.940 12 C 0.056 3.944 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.063 3.937 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.145 4.145 22 C -0.149 4.149 23 N -0.523 5.523 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.058 0.942 30 H -0.006 1.006 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.392 6.045 -8.264 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 N -0.163 5.163 4 N -0.196 5.196 5 H 0.280 0.720 6 C 0.036 3.964 7 C -0.007 4.007 8 N -0.258 5.258 9 C 0.055 3.945 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.145 4.145 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.065 4.065 19 C -0.149 4.149 20 C -0.115 4.115 21 C -0.202 4.202 22 C -0.207 4.207 23 N -0.252 5.252 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.012 0.988 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.802 6.715 -7.943 13.002 hybrid contribution 0.598 -0.508 0.706 1.055 sum 8.400 6.207 -7.237 12.707 Atomic orbital electron populations 1.20048 0.84394 1.03347 1.03782 1.24243 0.98217 0.85855 0.97454 1.77838 0.87004 1.22596 1.28835 1.47838 1.07531 1.06416 1.57850 0.71974 1.24210 0.94902 0.83528 0.93791 1.20572 0.90473 0.95388 0.94278 1.62208 1.04675 1.45778 1.13133 1.20031 0.89376 0.90319 0.94753 1.21139 1.14264 1.28046 0.90833 0.92156 1.24956 0.95469 0.95667 0.98432 1.69991 1.17276 1.30869 1.35085 0.86542 0.77917 0.77580 0.85972 1.19798 1.21120 1.21140 1.22089 0.88144 0.94017 1.02201 1.21703 0.93170 0.98743 1.01319 1.21091 0.94848 0.97914 0.97634 1.21830 0.97971 0.99395 1.01006 1.21891 1.01265 1.01173 0.96348 1.70472 0.99926 1.30444 1.24404 0.89831 0.90583 0.89700 0.89826 0.91936 0.92453 0.98769 0.93116 0.89150 0.95888 0.92921 0.91348 0.91598 0.92818 0.93148 0.93084 0.93447 0.92726 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.51 36.01 0.38 -0.43 16 2 C 0.22 4.24 8.14 -156.85 -1.28 2.97 16 3 N -0.33 -6.07 12.80 32.42 0.41 -5.66 16 4 N -0.48 -7.95 7.45 32.62 0.24 -7.70 16 5 H 0.44 5.56 8.96 -182.34 -1.63 3.92 16 6 C 0.31 5.89 7.05 -155.69 -1.10 4.79 16 7 C 0.12 2.11 5.44 -4.98 -0.03 2.08 16 8 N -0.53 -10.81 4.37 -237.52 -1.04 -11.84 16 9 C 0.18 4.66 4.61 -4.98 -0.02 4.64 16 10 C -0.50 -14.22 8.53 -34.44 -0.29 -14.51 16 11 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.06 1.11 4.51 -3.83 -0.02 1.09 16 19 C -0.11 -1.52 4.75 -26.74 -0.13 -1.65 16 20 C -0.10 -1.13 2.92 -90.62 -0.26 -1.40 16 21 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 22 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 23 N -0.52 -11.02 9.73 -8.16 -0.08 -11.09 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.10 6.35 -51.93 -0.33 0.77 16 28 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 29 H 0.06 1.63 5.78 -51.93 -0.30 1.33 16 30 H -0.01 -0.16 8.00 -51.93 -0.42 -0.57 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.09 1.78 5.85 -51.92 -0.30 1.48 16 33 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.05 0.64 6.53 -51.93 -0.34 0.30 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -33.05 340.34 -10.07 -43.12 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.28 Total: 0.82 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.17 Total: -3.52 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.28 Total: -62.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.05 -10.07 -43.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292536585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.790 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds