Wall clock time and date at job start Mon Mar 30 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30715 * 125.52416 * 2 1 4 4 N 1.40447 * 106.78959 * 179.78644 * 3 2 1 5 5 H 0.96996 * 126.82284 * 180.26128 * 4 3 2 6 6 C 1.34432 * 106.35391 * 0.40840 * 4 3 2 7 7 C 1.50697 * 125.96351 * 179.85735 * 6 4 3 8 8 N 1.46901 * 109.47242 * 94.71391 * 7 6 4 9 9 C 1.46902 * 110.99967 * 66.04868 * 8 7 6 10 10 C 1.50696 * 109.47010 * 199.92616 * 9 8 7 11 11 H 1.07996 * 120.00112 * 1.63337 * 10 9 8 12 12 C 1.37874 * 120.00209 * 181.63502 * 10 9 8 13 13 N 1.31523 * 119.99825 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00540 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47226 * 119.99645 * 14 12 10 17 17 H 1.48504 * 109.47092 * 239.99987 * 14 12 10 18 18 C 1.46900 * 110.99812 * 190.00333 * 8 7 6 19 19 C 1.52997 * 109.47542 * 71.39170 * 18 8 7 20 20 C 1.52993 * 109.47515 * 181.30753 * 19 18 8 21 21 C 1.53002 * 109.47550 * 174.99853 * 20 19 18 22 22 C 1.53012 * 109.46968 * 294.99800 * 20 19 18 23 23 N 1.30839 * 108.07692 * 359.59225 * 6 4 3 24 24 H 1.09001 * 109.46912 * 269.95092 * 1 2 3 25 25 H 1.08995 * 109.46985 * 29.95216 * 1 2 3 26 26 H 1.09003 * 109.47019 * 149.95324 * 1 2 3 27 27 H 1.08998 * 109.46753 * 334.71268 * 7 6 4 28 28 H 1.09003 * 109.47433 * 214.71544 * 7 6 4 29 29 H 1.08998 * 109.46834 * 319.92582 * 9 8 7 30 30 H 1.08994 * 109.46893 * 79.92427 * 9 8 7 31 31 H 0.96996 * 119.99809 * 179.97438 * 13 12 10 32 32 H 1.09010 * 109.46818 * 191.39072 * 18 8 7 33 33 H 1.09002 * 109.47340 * 311.38678 * 18 8 7 34 34 H 1.08999 * 109.46846 * 301.30648 * 19 18 8 35 35 H 1.09003 * 109.47044 * 61.30323 * 19 18 8 36 36 H 1.08996 * 109.47466 * 54.99253 * 20 19 18 37 37 H 1.09003 * 109.46642 * 59.99522 * 21 20 19 38 38 H 1.08995 * 109.47340 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47049 * 300.00273 * 21 20 19 40 40 H 1.08998 * 109.46908 * 180.02562 * 22 20 19 41 41 H 1.08996 * 109.46581 * 299.99995 * 22 20 19 42 42 H 1.09000 * 109.46730 * 59.99808 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2666 1.0639 0.0000 4 7 3.5966 0.6128 0.0050 5 1 4.3965 1.1614 0.0098 6 6 3.5408 -0.7304 -0.0014 7 6 4.7227 -1.6653 -0.0025 8 7 5.0323 -2.0648 1.3769 9 6 3.9469 -2.8744 1.9466 10 6 4.0425 -2.8555 3.4504 11 1 4.8146 -2.2767 3.9353 12 6 3.1442 -3.5773 4.2074 13 7 2.2036 -4.2820 3.6170 14 14 3.2621 -3.5535 6.0715 15 1 4.3981 -2.6909 6.4846 16 1 1.9998 -3.0166 6.6405 17 1 3.4824 -4.9345 6.5712 18 6 6.3134 -2.7807 1.4426 19 6 7.4606 -1.7961 1.2074 20 6 8.7929 -2.5472 1.2435 21 6 9.9294 -1.5875 0.8853 22 6 9.0236 -3.1093 2.6478 23 7 2.2812 -1.0844 -0.0009 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5146 27 1 5.5853 -1.1598 -0.4366 28 1 4.4854 -2.5505 -0.5926 29 1 2.9861 -2.4623 1.6384 30 1 4.0334 -3.9006 1.5898 31 1 1.5718 -4.7901 4.1495 32 1 6.4235 -3.2387 2.4256 33 1 6.3365 -3.5553 0.6762 34 1 7.3376 -1.3209 0.2342 35 1 7.4515 -1.0346 1.9872 36 1 8.7682 -3.3657 0.5241 37 1 9.9541 -0.7690 1.6048 38 1 10.8786 -2.1226 0.9115 39 1 9.7651 -1.1870 -0.1150 40 1 9.9730 -3.6441 2.6736 41 1 9.0483 -2.2908 3.3671 42 1 8.2139 -3.7930 2.9029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292536585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:56 Heat of formation + Delta-G solvation = 47.165315 kcal Electronic energy + Delta-G solvation = -20687.416509 eV Core-core repulsion = 17702.769484 eV Total energy + Delta-G solvation = -2984.647025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.08967 -39.07989 -36.74191 -34.78497 -34.17009 -32.84917 -30.35916 -30.04749 -28.69652 -27.91501 -26.65141 -24.35176 -22.87861 -21.58006 -21.36807 -20.71773 -18.79610 -18.49599 -16.97763 -16.86330 -16.34204 -15.91447 -15.69801 -15.23621 -14.81664 -14.58037 -14.38627 -14.11286 -13.76996 -13.69421 -13.44350 -13.28624 -12.98922 -12.98162 -12.92654 -12.72373 -12.56737 -12.34722 -12.10368 -12.00176 -11.46679 -11.40110 -11.30317 -11.11985 -11.02375 -10.89578 -10.51818 -10.43408 -9.10596 -8.15104 -6.24108 0.58426 1.37299 1.38349 1.50829 1.73897 1.90048 2.40343 3.08223 3.16951 3.37833 3.65768 3.88841 4.03870 4.09698 4.19306 4.35911 4.43901 4.53586 4.64655 4.73479 4.83253 4.85679 4.87259 4.91672 4.94534 5.06859 5.10550 5.21228 5.23795 5.30499 5.30745 5.38887 5.46527 5.55549 5.59002 5.63776 5.69223 6.12377 6.19200 6.38197 6.56536 6.91791 7.18370 7.43519 8.95230 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.007880 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.610797 B = 3552.277716 C = 5846.303111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.208 3.792 3 N -0.339 5.339 4 N -0.464 5.464 5 H 0.452 0.548 6 C 0.305 3.695 7 C 0.127 3.873 8 N -0.536 5.536 9 C 0.197 3.803 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.002 3.998 13 N -0.930 5.930 14 Si 0.959 3.041 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.277 1.277 18 C 0.065 3.935 19 C -0.099 4.099 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.150 4.150 23 N -0.568 5.568 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.058 0.942 29 H 0.032 0.968 30 H -0.040 1.040 31 H 0.261 0.739 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.073 7.352 -8.522 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 N -0.170 5.170 4 N -0.183 5.183 5 H 0.301 0.699 6 C 0.026 3.974 7 C -0.004 4.004 8 N -0.261 5.261 9 C 0.071 3.929 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.784 3.216 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.202 1.202 18 C -0.062 4.062 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.197 4.197 22 C -0.208 4.208 23 N -0.298 5.298 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.076 0.924 29 H 0.050 0.950 30 H -0.022 1.022 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.527 8.051 -8.210 14.933 hybrid contribution 0.099 -0.908 0.741 1.177 sum 9.626 7.143 -7.469 14.123 Atomic orbital electron populations 1.20207 0.82028 1.05029 1.04173 1.24976 0.99878 0.85351 0.97204 1.77773 0.87585 1.22697 1.28926 1.47750 1.07820 1.05991 1.56759 0.69924 1.24384 0.94789 0.84414 0.93802 1.20728 0.91814 0.95483 0.92349 1.62076 1.04043 1.44634 1.15383 1.19591 0.90340 0.88981 0.93972 1.21443 1.13953 1.27732 0.92288 0.92532 1.25827 0.95084 0.95276 1.03401 1.70121 1.18150 1.31774 1.36988 0.85487 0.78051 0.78006 0.80013 1.18894 1.20820 1.20221 1.22109 0.88149 0.95157 1.00805 1.21614 0.92352 0.97561 1.02177 1.21080 0.94520 0.98374 0.97237 1.21779 0.97406 0.98889 1.01625 1.21894 1.01236 1.00762 0.96879 1.70449 1.01419 1.32182 1.25740 0.89929 0.87761 0.89192 0.85107 0.92354 0.94998 1.02187 0.92967 0.92078 0.95437 0.90571 0.92221 0.91112 0.92853 0.92055 0.91861 0.91800 0.93110 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.57 10.51 71.24 0.75 -0.82 16 2 C 0.21 7.82 8.14 138.63 1.13 8.95 16 3 N -0.34 -12.07 12.80 -51.33 -0.66 -12.73 16 4 N -0.46 -14.74 7.45 -50.70 -0.38 -15.12 16 5 H 0.45 10.53 8.96 -213.10 -1.91 8.62 16 6 C 0.31 11.27 7.05 138.22 0.98 12.24 16 7 C 0.13 4.18 5.44 85.56 0.47 4.64 16 8 N -0.54 -21.79 4.37 -905.37 -3.96 -25.75 16 9 C 0.20 10.59 4.61 85.56 0.39 10.98 16 10 C -0.52 -29.79 8.53 25.60 0.22 -29.57 16 11 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 14 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 15 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 C 0.07 2.27 4.51 86.30 0.39 2.66 16 19 C -0.10 -2.50 4.75 30.59 0.15 -2.35 16 20 C -0.09 -1.98 2.92 -10.79 -0.03 -2.02 16 21 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 22 C -0.15 -3.56 8.95 71.99 0.64 -2.91 16 23 N -0.57 -24.19 9.73 -179.72 -1.75 -25.94 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.13 3.02 6.35 -2.39 -0.02 3.01 16 28 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 29 H 0.03 1.88 5.78 -2.39 -0.01 1.87 16 30 H -0.04 -2.34 8.00 -2.39 -0.02 -2.36 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.06 2.48 5.85 -2.38 -0.01 2.47 16 33 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.08 1.57 6.53 -2.39 -0.02 1.55 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.04 1.14 6.59 -2.39 -0.02 1.12 16 Total: -1.00 -73.27 340.34 0.86 -72.41 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -0.91 Total: 16.07 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.20 Total: 0.73 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -6.46 Total: -136.86 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.27 0.86 -72.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292536585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.574 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds