Wall clock time and date at job start Mon Mar 30 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30704 * 125.52671 * 2 1 4 4 N 1.40449 * 106.79403 * 179.78822 * 3 2 1 5 5 H 0.96995 * 126.82178 * 180.25437 * 4 3 2 6 6 C 1.34430 * 106.35107 * 0.40147 * 4 3 2 7 7 C 1.50693 * 125.96163 * 179.85589 * 6 4 3 8 8 N 1.46907 * 109.46937 * 93.71153 * 7 6 4 9 9 C 1.46898 * 111.00072 * 166.50693 * 8 7 6 10 10 C 1.50706 * 109.46987 * 174.79116 * 9 8 7 11 11 H 1.07997 * 119.99726 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99553 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00484 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99619 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47127 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46810 * 119.99940 * 14 12 10 17 17 H 1.48497 * 109.47149 * 240.00166 * 14 12 10 18 18 C 1.46892 * 111.00140 * 42.54651 * 8 7 6 19 19 C 1.52999 * 109.47077 * 78.28693 * 18 8 7 20 20 C 1.52993 * 109.47656 * 78.12631 * 19 18 8 21 21 C 1.53001 * 109.46911 * 198.12636 * 19 18 8 22 22 C 1.53002 * 109.46936 * 318.12226 * 19 18 8 23 23 N 1.30831 * 108.07491 * 359.59761 * 6 4 3 24 24 H 1.09001 * 109.47158 * 269.95533 * 1 2 3 25 25 H 1.08997 * 109.47418 * 29.96030 * 1 2 3 26 26 H 1.09002 * 109.47199 * 149.96076 * 1 2 3 27 27 H 1.09000 * 109.47598 * 333.71169 * 7 6 4 28 28 H 1.09000 * 109.47295 * 213.70355 * 7 6 4 29 29 H 1.09010 * 109.46648 * 294.78551 * 9 8 7 30 30 H 1.08998 * 109.47519 * 54.78501 * 9 8 7 31 31 H 0.97002 * 119.99963 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.47222 * 198.28396 * 18 8 7 33 33 H 1.09000 * 109.47370 * 318.28469 * 18 8 7 34 34 H 1.08999 * 109.47042 * 51.59373 * 20 19 18 35 35 H 1.08995 * 109.47749 * 171.59638 * 20 19 18 36 36 H 1.09004 * 109.46768 * 291.60017 * 20 19 18 37 37 H 1.09004 * 109.47702 * 59.99594 * 21 19 18 38 38 H 1.09003 * 109.46873 * 180.02562 * 21 19 18 39 39 H 1.09004 * 109.47503 * 299.99524 * 21 19 18 40 40 H 1.08990 * 109.46909 * 79.09994 * 22 19 18 41 41 H 1.09003 * 109.47054 * 199.10472 * 22 19 18 42 42 H 1.09002 * 109.47075 * 319.09751 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2665 1.0637 0.0000 4 7 3.5966 0.6127 0.0050 5 1 4.3965 1.1613 0.0096 6 6 3.5408 -0.7304 -0.0014 7 6 4.7227 -1.6653 -0.0024 8 7 5.0473 -2.0457 1.3789 9 6 5.9708 -3.1877 1.4073 10 6 6.3804 -3.4674 2.8304 11 1 5.9936 -2.8574 3.6333 12 6 7.2488 -4.5019 3.1072 13 7 7.7201 -5.2444 2.1293 14 14 7.7570 -4.8481 4.8711 15 1 7.0929 -3.8770 5.7772 16 1 7.3509 -6.2277 5.2415 17 1 9.2306 -4.7152 4.9968 18 6 3.8282 -2.3352 2.1456 19 6 3.3183 -3.7318 1.7844 20 6 4.1574 -4.7849 2.5108 21 6 1.8542 -3.8654 2.2080 22 6 3.4331 -3.9416 0.2732 23 7 2.2812 -1.0844 -0.0008 24 1 -0.3633 -0.0008 1.0277 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3634 -0.8896 -0.5144 27 1 5.5805 -1.1660 -0.4529 28 1 4.4789 -2.5586 -0.5774 29 1 5.4755 -4.0658 0.9925 30 1 6.8549 -2.9550 0.8138 31 1 8.3308 -5.9725 2.3241 32 1 4.0512 -2.2944 3.2117 33 1 3.0639 -1.5961 1.9056 34 1 4.1973 -4.5477 3.5739 35 1 3.7053 -5.7672 2.3744 36 1 5.1677 -4.7899 2.1015 37 1 1.2562 -3.1152 1.6906 38 1 1.4910 -4.8606 1.9511 39 1 1.7723 -3.7160 3.2847 40 1 4.4645 -4.1840 0.0175 41 1 2.7812 -4.7608 -0.0304 42 1 3.1352 -3.0295 -0.2439 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292561459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:59 Heat of formation + Delta-G solvation = 141.656346 kcal Electronic energy + Delta-G solvation = -22086.889780 eV Core-core repulsion = 19106.340193 eV Total energy + Delta-G solvation = -2980.549586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11672 -39.18055 -33.96561 -33.19343 -32.80684 -31.42724 -28.92005 -27.87083 -27.58170 -25.89127 -25.43217 -24.09323 -21.41561 -20.44957 -20.09344 -18.24472 -17.41278 -16.44465 -15.96777 -15.09459 -14.92128 -14.39560 -14.05943 -13.89618 -13.23714 -13.09501 -12.92077 -12.76762 -12.50495 -12.18579 -11.85583 -11.58332 -11.28322 -11.22077 -11.01321 -10.80658 -10.73329 -10.58624 -10.46294 -10.16777 -10.00385 -9.86513 -9.65257 -9.57439 -9.33190 -9.05723 -8.85761 -8.38628 -7.01387 -6.08112 -4.02200 1.76346 2.81765 3.02712 3.28819 3.37553 3.41649 4.15881 4.41016 4.75863 5.01222 5.04474 5.27820 5.50124 5.54336 5.64012 5.71207 5.75551 5.82021 5.92545 5.98133 6.23711 6.31168 6.39928 6.43087 6.50451 6.53410 6.59933 6.68193 6.80081 6.91196 7.02864 7.14921 7.22257 7.24376 7.26702 7.42170 7.74338 7.93295 8.10035 8.12908 8.29348 8.43898 8.97416 9.54727 11.01920 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.006005 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.204138 B = 4661.707863 C = 5023.191497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.219 3.781 3 N -0.329 5.329 4 N -0.476 5.476 5 H 0.440 0.560 6 C 0.312 3.688 7 C 0.090 3.910 8 N -0.525 5.525 9 C 0.159 3.841 10 C -0.490 4.490 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.071 3.929 19 C -0.079 4.079 20 C -0.173 4.173 21 C -0.132 4.132 22 C -0.175 4.175 23 N -0.532 5.532 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.013 0.987 36 H 0.145 0.855 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 6.752 -5.006 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 N -0.160 5.160 4 N -0.193 5.193 5 H 0.285 0.715 6 C 0.034 3.966 7 C -0.039 4.039 8 N -0.250 5.250 9 C 0.035 3.965 10 C -0.529 4.529 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.058 4.058 19 C -0.081 4.081 20 C -0.229 4.229 21 C -0.190 4.190 22 C -0.231 4.231 23 N -0.263 5.263 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.162 0.838 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.069 7.396 -4.820 13.391 hybrid contribution 0.639 -0.673 0.784 1.215 sum -9.430 6.723 -4.036 12.264 Atomic orbital electron populations 1.20046 0.84365 1.03650 1.03535 1.24281 0.98188 0.86011 0.97858 1.77897 0.87057 1.22620 1.28441 1.47965 1.07659 1.06589 1.57070 0.71452 1.24467 0.95082 0.83816 0.93222 1.21573 0.89994 0.96364 0.96016 1.62722 1.13597 1.41800 1.06848 1.20718 0.90403 0.87042 0.98293 1.20988 1.25910 1.13639 0.92370 0.91921 1.24853 0.96359 0.96286 0.97060 1.69935 1.32841 1.19897 1.31032 0.86544 0.78313 0.78139 0.85186 1.19764 1.21063 1.21108 1.22279 0.90473 0.94378 0.98645 1.20893 0.94600 0.97373 0.95198 1.23115 1.05052 0.94314 1.00404 1.21821 0.96748 1.00446 0.99992 1.22888 1.01631 1.02053 0.96576 1.70465 0.99775 1.30241 1.25780 0.90059 0.90409 0.89699 0.89892 0.88442 0.94051 0.95521 0.92878 0.91303 0.92158 0.93919 0.96750 0.83782 0.92816 0.93946 0.93971 0.91291 0.94370 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.22 3.22 8.14 -156.86 -1.28 1.94 16 3 N -0.33 -5.01 12.80 32.42 0.41 -4.59 16 4 N -0.48 -6.77 7.45 32.62 0.24 -6.53 16 5 H 0.44 5.01 8.96 -182.34 -1.63 3.38 16 6 C 0.31 4.89 5.87 -155.70 -0.91 3.98 16 7 C 0.09 1.48 5.16 -4.98 -0.03 1.45 16 8 N -0.52 -10.35 4.91 -237.52 -1.17 -11.52 16 9 C 0.16 3.68 3.84 -4.97 -0.02 3.66 16 10 C -0.49 -12.49 5.70 -34.44 -0.20 -12.69 16 11 H 0.06 1.65 6.84 -52.49 -0.36 1.29 16 12 C 0.06 1.45 4.74 -17.82 -0.08 1.37 16 13 N -0.90 -24.58 13.16 55.43 0.73 -23.85 16 14 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.07 1.38 4.36 -3.83 -0.02 1.36 16 19 C -0.08 -1.49 0.77 -154.51 -0.12 -1.61 16 20 C -0.17 -3.74 6.71 37.15 0.25 -3.50 16 21 C -0.13 -2.23 8.30 37.16 0.31 -1.93 16 22 C -0.18 -3.14 6.66 37.16 0.25 -2.90 16 23 N -0.53 -8.52 8.02 -8.16 -0.07 -8.58 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.10 1.62 4.04 -51.93 -0.21 1.41 16 29 H 0.04 1.00 2.45 -51.92 -0.13 0.87 16 30 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.07 1.48 6.82 -51.93 -0.35 1.13 16 33 H 0.06 1.15 4.87 -51.93 -0.25 0.89 16 34 H 0.04 0.95 7.60 -51.93 -0.39 0.55 16 35 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 36 H 0.14 3.50 2.35 -51.93 -0.12 3.37 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.34 4.46 -51.93 -0.23 1.11 16 41 H 0.04 0.65 7.99 -51.93 -0.41 0.24 16 42 H 0.08 1.44 3.32 -51.93 -0.17 1.27 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -28.38 309.18 -8.88 -37.26 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.21 Total: 6.38 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.47 Total: -9.07 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.16 Total: -55.07 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.38 -8.88 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292561459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.918 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds