Wall clock time and date at job start Mon Mar 30 2020 00:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 N 1.30715 * 125.52244 * 90.03007 * 15 14 12 17 17 N 1.40451 * 106.78837 * 179.97438 * 16 15 14 18 18 H 0.97000 * 126.81820 * 180.02562 * 17 16 15 19 19 C 1.34422 * 106.35541 * 359.97438 * 17 16 15 20 20 C 1.50699 * 125.96179 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.47128 * 75.00354 * 20 19 17 22 22 C 1.52997 * 109.47516 * 195.00170 * 20 19 17 23 23 C 1.52998 * 109.47153 * 315.00528 * 20 19 17 24 24 N 1.30834 * 108.07785 * 359.75556 * 19 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 30 30 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 32 32 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 33 33 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 34 34 H 1.08996 * 109.46586 * 60.00052 * 21 20 19 35 35 H 1.08992 * 109.47197 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.46866 * 300.00128 * 21 20 19 37 37 H 1.09003 * 109.46781 * 60.00185 * 22 20 19 38 38 H 1.09000 * 109.47505 * 179.97438 * 22 20 19 39 39 H 1.08996 * 109.47386 * 300.00676 * 22 20 19 40 40 H 1.09003 * 109.47491 * 60.00042 * 23 20 19 41 41 H 1.09008 * 109.47101 * 179.97438 * 23 20 19 42 42 H 1.09003 * 109.47135 * 299.99809 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 7 3.5414 -0.1869 4.0414 17 7 3.8320 -0.9972 5.1512 18 1 4.6318 -0.9675 5.6992 19 6 2.7809 -1.8212 5.3038 20 6 2.6316 -2.8773 6.3684 21 6 2.3062 -2.2102 7.7064 22 6 1.4983 -3.8311 5.9853 23 6 3.9385 -3.6626 6.4946 24 7 1.9076 -1.5425 4.3703 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.8762 -2.6150 0.3648 30 1 1.9060 -2.5657 2.1436 31 1 0.4385 -2.0742 1.2639 32 1 1.9297 1.0871 2.3124 33 1 0.5722 -0.0344 2.5727 34 1 1.3751 -1.6507 7.6164 35 1 2.1986 -2.9739 8.4765 36 1 3.1135 -1.5307 7.9794 37 1 1.7301 -4.3064 5.0321 38 1 1.3906 -4.5952 6.7551 39 1 0.5673 -3.2716 5.8953 40 1 4.7459 -2.9831 6.7677 41 1 3.8306 -4.4262 7.2650 42 1 4.1703 -4.1379 5.5414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292747182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:00 Heat of formation + Delta-G solvation = 80.758538 kcal Electronic energy + Delta-G solvation = -20797.333568 eV Core-core repulsion = 17814.143255 eV Total energy + Delta-G solvation = -2983.190313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02895 -37.41769 -36.76435 -33.06658 -32.13113 -30.66409 -28.66767 -27.66865 -27.48426 -26.87986 -25.09615 -23.93653 -23.11097 -20.27844 -19.53598 -18.95188 -17.56591 -16.09435 -15.72282 -15.37297 -14.95433 -14.37177 -14.25127 -13.90688 -13.77707 -13.42415 -12.70359 -12.52879 -12.48362 -12.43844 -12.10271 -11.96834 -11.52852 -11.37487 -11.30867 -11.13060 -11.00651 -10.98393 -10.73018 -10.62254 -10.43012 -9.96963 -9.88875 -9.76728 -9.70497 -9.24423 -8.80671 -8.33695 -7.10199 -5.95726 -3.98826 1.81489 2.77327 3.13026 3.35040 3.41352 3.46214 3.92420 4.41292 4.46949 4.60094 4.71613 4.99921 5.09296 5.19263 5.33246 5.36685 5.38610 5.40734 5.56507 5.66925 5.68302 5.76596 5.95726 6.08627 6.12881 6.21184 6.40086 6.51729 6.58699 6.69636 6.78661 6.91024 7.01424 7.16588 7.20161 7.52904 7.78208 7.88639 8.15749 8.38325 8.44873 8.63510 9.06603 9.65647 11.11565 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.004084 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.036330 B = 6853.881610 C = 6992.095225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.038 3.962 14 C 0.142 3.858 15 C 0.253 3.747 16 N -0.303 5.303 17 N -0.489 5.489 18 H 0.433 0.567 19 C 0.283 3.717 20 C 0.012 3.988 21 C -0.141 4.141 22 C -0.129 4.129 23 C -0.147 4.147 24 N -0.528 5.528 25 H 0.032 0.968 26 H 0.089 0.911 27 H 0.008 0.992 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -7.283 20.100 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.111 4.111 14 C 0.011 3.989 15 C -0.031 4.031 16 N -0.131 5.131 17 N -0.206 5.206 18 H 0.277 0.723 19 C 0.004 3.996 20 C 0.009 3.991 21 C -0.199 4.199 22 C -0.187 4.187 23 C -0.205 4.205 24 N -0.257 5.257 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.209 -6.723 19.479 20.855 hybrid contribution 0.030 -0.440 -0.377 0.580 sum 3.238 -7.163 19.102 20.656 Atomic orbital electron populations 1.22418 1.00668 0.99559 1.00607 1.19344 0.89874 0.94634 0.85555 0.94070 1.21095 1.30471 1.12411 0.89576 0.91977 1.24908 0.95282 0.95133 0.98922 1.69882 1.37141 1.23057 1.23344 0.86524 0.79225 0.79265 0.82550 1.20838 1.21319 1.19907 1.62325 1.59658 1.02281 1.01027 1.22220 0.97361 0.90641 1.00865 1.20300 0.95688 0.97434 0.85468 1.24409 0.90001 0.92149 0.96493 1.78106 1.17728 1.16986 1.00269 1.47972 1.18578 1.28409 1.25624 0.72253 1.24143 0.85078 0.93935 0.96429 1.19194 0.98034 0.91271 0.90586 1.21914 1.02320 1.00849 0.94797 1.21715 0.97487 0.97887 1.01630 1.21969 0.95117 1.00224 1.03152 1.70369 1.30597 1.17946 1.06782 0.94896 0.89261 0.97259 0.93041 0.91234 0.93579 0.96041 0.89351 0.92632 0.91662 0.91046 0.92630 0.91797 0.92100 0.91076 0.92679 0.90821 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.28 37.16 0.31 -3.95 16 2 C 0.21 5.46 2.34 -68.87 -0.16 5.30 16 3 H 0.04 1.16 8.03 -51.93 -0.42 0.74 16 4 C -0.50 -13.88 7.94 -34.44 -0.27 -14.15 16 5 H 0.06 1.75 6.75 -52.49 -0.35 1.40 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.53 -12.12 4.73 -237.74 -1.13 -13.25 16 13 C 0.04 0.81 8.72 60.06 0.52 1.33 16 14 C 0.14 2.87 5.03 -4.98 -0.03 2.84 16 15 C 0.25 4.77 6.76 -156.85 -1.06 3.71 16 16 N -0.30 -5.47 12.80 32.42 0.41 -5.06 16 17 N -0.49 -6.57 7.28 32.62 0.24 -6.34 16 18 H 0.43 4.17 8.54 -182.33 -1.56 2.62 16 19 C 0.28 3.80 6.49 -155.70 -1.01 2.79 16 20 C 0.01 0.11 0.99 -155.66 -0.15 -0.04 16 21 C -0.14 -1.02 8.46 37.16 0.31 -0.70 16 22 C -0.13 -1.21 8.04 37.16 0.30 -0.92 16 23 C -0.15 -1.04 8.35 37.16 0.31 -0.73 16 24 N -0.53 -8.97 9.68 -8.16 -0.08 -9.05 16 25 H 0.03 0.79 6.38 -51.93 -0.33 0.45 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 27 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.07 1.57 6.53 -51.93 -0.34 1.23 16 30 H 0.05 0.94 6.53 -51.93 -0.34 0.60 16 31 H 0.02 0.45 6.28 -51.93 -0.33 0.13 16 32 H 0.09 1.76 8.00 -51.93 -0.42 1.34 16 33 H 0.06 1.10 6.94 -51.93 -0.36 0.74 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.05 0.33 7.70 -51.93 -0.40 -0.07 16 41 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -31.55 331.24 -9.00 -40.55 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.02 Total: -0.45 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.02 Total: -2.98 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.08 Total: -58.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.55 -9.00 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292747182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.308 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds