Wall clock time and date at job start Mon Mar 30 2020 00:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 N 1.30715 * 125.52244 * 90.03007 * 15 14 12 17 17 N 1.40451 * 106.78837 * 179.97438 * 16 15 14 18 18 H 0.97000 * 126.81820 * 180.02562 * 17 16 15 19 19 C 1.34422 * 106.35541 * 359.97438 * 17 16 15 20 20 C 1.50699 * 125.96179 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.47128 * 75.00354 * 20 19 17 22 22 C 1.52997 * 109.47516 * 195.00170 * 20 19 17 23 23 C 1.52998 * 109.47153 * 315.00528 * 20 19 17 24 24 N 1.30834 * 108.07785 * 359.75556 * 19 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 30 30 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 32 32 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 33 33 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 34 34 H 1.08996 * 109.46586 * 60.00052 * 21 20 19 35 35 H 1.08992 * 109.47197 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.46866 * 300.00128 * 21 20 19 37 37 H 1.09003 * 109.46781 * 60.00185 * 22 20 19 38 38 H 1.09000 * 109.47505 * 179.97438 * 22 20 19 39 39 H 1.08996 * 109.47386 * 300.00676 * 22 20 19 40 40 H 1.09003 * 109.47491 * 60.00042 * 23 20 19 41 41 H 1.09008 * 109.47101 * 179.97438 * 23 20 19 42 42 H 1.09003 * 109.47135 * 299.99809 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 7 3.5414 -0.1869 4.0414 17 7 3.8320 -0.9972 5.1512 18 1 4.6318 -0.9675 5.6992 19 6 2.7809 -1.8212 5.3038 20 6 2.6316 -2.8773 6.3684 21 6 2.3062 -2.2102 7.7064 22 6 1.4983 -3.8311 5.9853 23 6 3.9385 -3.6626 6.4946 24 7 1.9076 -1.5425 4.3703 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.8762 -2.6150 0.3648 30 1 1.9060 -2.5657 2.1436 31 1 0.4385 -2.0742 1.2639 32 1 1.9297 1.0871 2.3124 33 1 0.5722 -0.0344 2.5727 34 1 1.3751 -1.6507 7.6164 35 1 2.1986 -2.9739 8.4765 36 1 3.1135 -1.5307 7.9794 37 1 1.7301 -4.3064 5.0321 38 1 1.3906 -4.5952 6.7551 39 1 0.5673 -3.2716 5.8953 40 1 4.7459 -2.9831 6.7677 41 1 3.8306 -4.4262 7.2650 42 1 4.1703 -4.1379 5.5414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292747182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:59 Heat of formation + Delta-G solvation = 59.882615 kcal Electronic energy + Delta-G solvation = -20798.238816 eV Core-core repulsion = 17814.143255 eV Total energy + Delta-G solvation = -2984.095561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.24873 -39.05196 -37.76394 -34.94284 -33.59551 -32.01943 -30.53115 -28.72177 -28.20664 -28.02573 -27.18743 -25.68410 -24.18945 -21.91781 -20.72058 -20.45276 -18.65920 -18.20234 -17.27968 -16.62333 -16.30626 -15.87083 -15.59878 -15.21527 -14.92323 -14.78986 -14.38401 -14.12028 -13.53240 -13.32634 -13.16066 -12.99546 -12.89282 -12.85622 -12.63137 -12.60300 -12.54253 -12.35332 -12.22853 -12.01622 -11.99785 -11.84641 -11.78341 -11.08566 -10.99942 -10.91676 -10.49057 -10.48345 -8.93736 -8.09544 -6.20177 0.61508 1.43422 1.44150 1.54952 1.69919 1.81678 2.44868 2.87870 3.19662 3.49145 3.54978 3.72718 3.94275 4.01625 4.23144 4.47761 4.51647 4.60903 4.71342 4.75683 4.77828 4.83775 4.85806 4.92607 4.97282 5.00204 5.02222 5.12207 5.14999 5.19065 5.29905 5.36304 5.37272 5.49383 5.52874 5.70811 5.79333 6.15056 6.21707 6.44248 6.65516 6.90986 7.14040 7.48326 8.96904 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.004084 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.036330 B = 6853.881610 C = 6992.095225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.217 3.783 3 H 0.011 0.989 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.539 5.539 13 C 0.051 3.949 14 C 0.148 3.852 15 C 0.237 3.763 16 N -0.331 5.331 17 N -0.474 5.474 18 H 0.451 0.549 19 C 0.295 3.705 20 C 0.013 3.987 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.144 4.144 24 N -0.554 5.554 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -8.848 21.944 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.029 0.971 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.263 5.263 13 C -0.097 4.097 14 C 0.017 3.983 15 C -0.046 4.046 16 N -0.161 5.161 17 N -0.193 5.193 18 H 0.299 0.701 19 C 0.016 3.984 20 C 0.010 3.990 21 C -0.195 4.195 22 C -0.186 4.186 23 C -0.202 4.202 24 N -0.284 5.284 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.966 -8.296 21.359 23.254 hybrid contribution -0.168 0.033 -0.822 0.840 sum 3.798 -8.263 20.537 22.460 Atomic orbital electron populations 1.22205 0.99823 0.99406 1.00320 1.19109 0.90394 0.93077 0.86420 0.97071 1.21316 1.30775 1.12453 0.90850 0.92815 1.25656 0.95362 0.95787 1.01682 1.70001 1.37748 1.24041 1.24072 0.85532 0.78712 0.78282 0.78938 1.20001 1.20791 1.19733 1.62189 1.60057 1.02873 1.01223 1.22075 0.97229 0.89795 1.00597 1.20154 0.96069 0.97040 0.85045 1.24039 0.90516 0.93312 0.96752 1.77976 1.17636 1.18465 1.01992 1.47831 1.19339 1.27499 1.24584 0.70104 1.25011 0.83795 0.93602 0.95952 1.19497 0.99257 0.90232 0.90011 1.21920 1.01891 1.01620 0.94055 1.21720 0.96707 0.98376 1.01816 1.21993 0.94084 1.00818 1.03321 1.70327 1.32072 1.18105 1.07875 0.94823 0.91624 0.95330 0.92877 0.92654 0.92495 0.95973 0.89866 0.92429 0.93154 0.88245 0.91667 0.93658 0.88993 0.92821 0.91246 0.88126 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.89 8.28 71.98 0.60 -7.30 16 2 C 0.22 11.47 2.34 44.17 0.10 11.57 16 3 H 0.01 0.66 8.03 -2.39 -0.02 0.64 16 4 C -0.52 -29.30 7.94 25.60 0.20 -29.10 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 8 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.54 -25.21 4.73 -906.06 -4.29 -29.50 16 13 C 0.05 2.23 8.72 127.69 1.11 3.35 16 14 C 0.15 6.07 5.03 85.56 0.43 6.50 16 15 C 0.24 8.97 6.76 138.63 0.94 9.91 16 16 N -0.33 -11.88 12.80 -51.33 -0.66 -12.54 16 17 N -0.47 -12.05 7.28 -50.71 -0.37 -12.42 16 18 H 0.45 7.69 8.54 -213.09 -1.82 5.87 16 19 C 0.29 7.49 6.49 138.23 0.90 8.39 16 20 C 0.01 0.21 0.99 -52.93 -0.05 0.15 16 21 C -0.14 -1.53 8.46 71.98 0.61 -0.93 16 22 C -0.13 -2.16 8.04 71.98 0.58 -1.58 16 23 C -0.14 -1.55 8.35 71.98 0.60 -0.95 16 24 N -0.55 -18.60 9.68 -179.73 -1.74 -20.34 16 25 H 0.03 1.62 6.38 -2.39 -0.02 1.61 16 26 H 0.06 3.60 6.07 -2.39 -0.01 3.58 16 27 H 0.03 1.26 6.75 -2.38 -0.02 1.25 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.05 2.53 6.53 -2.39 -0.02 2.51 16 30 H 0.06 2.33 6.53 -2.39 -0.02 2.31 16 31 H 0.02 0.94 6.28 -2.39 -0.01 0.93 16 32 H 0.08 3.43 8.00 -2.39 -0.02 3.41 16 33 H 0.06 2.31 6.94 -2.39 -0.02 2.29 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.05 1.09 8.08 -2.39 -0.02 1.07 16 40 H 0.07 0.56 7.70 -2.39 -0.02 0.54 16 41 H 0.10 0.59 8.14 -2.38 -0.02 0.58 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -68.78 331.24 0.87 -67.91 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -0.81 Total: 12.20 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.46 Total: 1.24 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.81 Total: -128.04 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.78 0.87 -67.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292747182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.790 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds