Wall clock time and date at job start Mon Mar 30 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.50702 * 109.47004 * 170.00406 * 14 12 2 16 16 N 1.30719 * 125.52553 * 90.02149 * 15 14 12 17 17 N 1.40442 * 106.78885 * 179.97438 * 16 15 14 18 18 H 0.97003 * 126.82348 * 180.02562 * 17 16 15 19 19 C 1.34432 * 106.35633 * 0.02562 * 17 16 15 20 20 C 1.50698 * 125.96145 * 180.02562 * 19 17 16 21 21 C 1.53008 * 109.47111 * 74.99958 * 20 19 17 22 22 C 1.53004 * 109.47082 * 194.99771 * 20 19 17 23 23 C 1.52995 * 109.47138 * 314.99830 * 20 19 17 24 24 N 1.30828 * 108.07606 * 359.74940 * 19 17 16 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 30 30 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 32 32 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 33 33 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 34 34 H 1.08995 * 109.47037 * 59.99621 * 21 20 19 35 35 H 1.09000 * 109.46802 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.46788 * 299.99691 * 21 20 19 37 37 H 1.08988 * 109.47051 * 60.00161 * 22 20 19 38 38 H 1.09001 * 109.47142 * 180.02562 * 22 20 19 39 39 H 1.09005 * 109.46752 * 299.99880 * 22 20 19 40 40 H 1.08999 * 109.47212 * 60.00309 * 23 20 19 41 41 H 1.09007 * 109.47543 * 179.97438 * 23 20 19 42 42 H 1.08995 * 109.47350 * 299.99586 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5161 -3.5795 16 7 1.9930 -1.4308 -4.3779 17 7 2.9924 -1.7150 -5.3228 18 1 2.9387 -2.3525 -6.0519 19 6 4.0382 -0.9279 -5.0161 20 6 5.3525 -0.8762 -5.7515 21 6 5.1694 -0.1235 -7.0710 22 6 6.3902 -0.1524 -4.8911 23 6 5.8323 -2.3003 -6.0391 24 7 3.7136 -0.2104 -3.9714 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 0.3491 -1.9548 -1.3694 30 1 1.8140 -2.5260 -2.2042 31 1 1.7059 -2.6220 -0.4303 32 1 0.6814 0.1054 -2.6087 33 1 2.1025 1.1190 -2.2604 34 1 4.8276 0.8910 -6.8661 35 1 6.1202 -0.0857 -7.6026 36 1 4.4302 -0.6392 -7.6839 37 1 6.5206 -0.6886 -3.9513 38 1 7.3408 -0.1146 -5.4232 39 1 6.0483 0.8622 -4.6863 40 1 5.0931 -2.8159 -6.6521 41 1 6.7828 -2.2630 -6.5715 42 1 5.9628 -2.8365 -5.0992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292747184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:01 Heat of formation + Delta-G solvation = 60.231241 kcal Electronic energy + Delta-G solvation = -20745.452194 eV Core-core repulsion = 17761.371750 eV Total energy + Delta-G solvation = -2984.080444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.25261 -39.07111 -37.75524 -34.93871 -33.64342 -32.04082 -30.43667 -28.81923 -28.20237 -28.01699 -27.26940 -25.57664 -24.25556 -21.89536 -20.74480 -20.46525 -18.66734 -18.20474 -17.28432 -16.61066 -16.32995 -15.89396 -15.63308 -15.19734 -14.92098 -14.80075 -14.39450 -14.14408 -13.47255 -13.41320 -13.16074 -13.01628 -12.89024 -12.87551 -12.62503 -12.60310 -12.52315 -12.35920 -12.22630 -12.05298 -11.99573 -11.84400 -11.81385 -11.11253 -10.97566 -10.90500 -10.50350 -10.47367 -8.94327 -8.09172 -6.19542 0.57808 1.42770 1.44414 1.56392 1.68356 1.83351 2.45313 2.89490 3.19981 3.41438 3.62500 3.69230 3.94605 3.99381 4.22235 4.43901 4.51251 4.57568 4.70491 4.71809 4.77298 4.81574 4.85933 4.90813 4.97632 5.00196 5.01734 5.09772 5.11551 5.18865 5.26678 5.36200 5.37194 5.49440 5.50557 5.70528 5.78708 6.16694 6.21325 6.43954 6.64430 6.91347 7.15401 7.48917 8.97387 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.004243 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.258971 B = 6597.193088 C = 6963.198934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.217 3.783 3 H 0.013 0.987 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.537 5.537 13 C 0.047 3.953 14 C 0.147 3.853 15 C 0.239 3.761 16 N -0.334 5.334 17 N -0.472 5.472 18 H 0.451 0.549 19 C 0.295 3.705 20 C 0.013 3.987 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.144 4.144 24 N -0.555 5.555 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.026 0.974 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 -4.917 -20.838 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.111 3.889 3 H 0.031 0.969 4 C -0.551 4.551 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.261 5.261 13 C -0.101 4.101 14 C 0.017 3.983 15 C -0.044 4.044 16 N -0.164 5.164 17 N -0.191 5.191 18 H 0.300 0.700 19 C 0.016 3.984 20 C 0.010 3.990 21 C -0.194 4.194 22 C -0.187 4.187 23 C -0.201 4.201 24 N -0.283 5.283 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.558 -4.887 -20.378 22.636 hybrid contribution -0.907 -0.486 0.656 1.220 sum 7.651 -5.373 -19.722 21.826 Atomic orbital electron populations 1.22217 0.99850 0.99451 1.00293 1.19115 0.90339 0.93083 0.86389 0.96929 1.21318 1.30590 1.12385 0.90820 0.92985 1.25649 0.95373 0.95819 1.01655 1.70006 1.37826 1.24054 1.24004 0.85480 0.78079 0.78572 0.79313 1.19579 1.20571 1.20481 1.62162 1.59417 1.03091 1.01454 1.22116 0.96623 0.90823 1.00551 1.20176 0.96004 0.96810 0.85324 1.24036 0.90507 0.93571 0.96328 1.77910 1.13316 1.20567 1.04604 1.47796 1.10342 1.34540 1.26449 0.70015 1.25009 0.93047 0.87985 0.92316 1.19499 0.85313 0.99348 0.94882 1.21921 1.04364 0.99509 0.93638 1.21722 0.97999 1.00122 0.98854 1.21986 1.03655 0.92250 1.02246 1.70320 1.14516 1.29341 1.14155 0.91563 0.94706 0.95468 0.92885 0.95765 0.92814 0.92522 0.92866 0.89463 0.93221 0.88234 0.91469 0.93945 0.88906 0.92968 0.91023 0.88130 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.91 8.22 71.98 0.59 -7.32 16 2 C 0.22 11.49 2.31 44.17 0.10 11.60 16 3 H 0.01 0.74 7.93 -2.39 -0.02 0.72 16 4 C -0.51 -29.20 7.97 25.60 0.20 -28.99 16 5 H 0.05 3.01 7.10 -2.91 -0.02 2.99 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.18 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.54 -25.12 4.69 -906.04 -4.25 -29.37 16 13 C 0.05 2.05 8.64 127.69 1.10 3.15 16 14 C 0.15 6.08 5.16 85.56 0.44 6.52 16 15 C 0.24 9.07 6.78 138.63 0.94 10.01 16 16 N -0.33 -11.37 11.94 -51.33 -0.61 -11.98 16 17 N -0.47 -11.73 7.28 -50.71 -0.37 -12.10 16 18 H 0.45 7.28 8.54 -213.09 -1.82 5.46 16 19 C 0.30 7.76 6.49 138.23 0.90 8.65 16 20 C 0.01 0.21 0.99 -52.93 -0.05 0.16 16 21 C -0.14 -1.61 8.46 71.98 0.61 -1.00 16 22 C -0.13 -2.44 8.04 71.98 0.58 -1.87 16 23 C -0.14 -1.63 8.35 71.98 0.60 -1.03 16 24 N -0.55 -19.79 10.51 -179.72 -1.89 -21.68 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 26 H 0.03 1.67 6.33 -2.39 -0.02 1.66 16 27 H 0.03 1.20 6.91 -2.38 -0.02 1.18 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.02 1.02 6.21 -2.39 -0.01 1.00 16 30 H 0.05 2.18 6.52 -2.39 -0.02 2.17 16 31 H 0.06 2.58 6.86 -2.39 -0.02 2.56 16 32 H 0.05 2.12 7.06 -2.39 -0.02 2.10 16 33 H 0.09 3.64 7.93 -2.39 -0.02 3.62 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.19 8.08 -2.38 -0.02 1.17 16 40 H 0.07 0.57 7.70 -2.39 -0.02 0.55 16 41 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -69.10 331.84 0.80 -68.30 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -0.81 Total: 12.16 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 6.46 Total: 1.10 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -6.88 Total: -128.32 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.10 0.80 -68.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292747184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.531 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds