Wall clock time and date at job start Mon Mar 30 2020 00:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47051 * 240.00371 * 3 2 1 5 5 H 1.48497 * 109.46958 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47162 * 120.00198 * 3 2 1 7 7 C 1.37877 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47561 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47226 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46959 * 180.02562 * 11 10 9 13 13 C 1.46844 * 111.00328 * 65.78729 * 12 11 10 14 14 C 1.53032 * 109.52527 * 185.83771 * 13 12 11 15 15 C 1.53114 * 109.28141 * 300.82107 * 14 13 12 16 16 C 1.53123 * 109.16198 * 57.65126 * 15 14 13 17 17 H 1.09011 * 109.49940 * 62.28508 * 16 15 14 18 18 N 1.46900 * 109.50895 * 182.40522 * 16 15 14 19 19 C 1.48524 * 111.00361 * 177.40954 * 18 16 15 20 20 C 1.54934 * 103.22839 * 159.72234 * 19 18 16 21 21 C 1.54590 * 102.92176 * 322.58259 * 20 19 18 22 22 C 1.47903 * 110.99667 * 294.80612 * 18 16 15 23 23 C 1.46846 * 110.99942 * 189.99883 * 12 11 10 24 24 H 0.96998 * 120.00249 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47075 * 59.99591 * 9 7 2 26 26 H 1.09005 * 109.47026 * 300.00485 * 9 7 2 27 27 H 1.08995 * 109.47022 * 59.99784 * 10 9 7 28 28 H 1.09000 * 109.46737 * 299.99998 * 10 9 7 29 29 H 1.08995 * 109.47437 * 59.99865 * 11 10 9 30 30 H 1.09000 * 109.47120 * 299.99591 * 11 10 9 31 31 H 1.09000 * 109.46271 * 305.85568 * 13 12 11 32 32 H 1.09008 * 109.46154 * 65.83367 * 13 12 11 33 33 H 1.09000 * 109.50025 * 60.76400 * 14 13 12 34 34 H 1.09000 * 109.50523 * 180.83925 * 14 13 12 35 35 H 1.09000 * 109.52528 * 177.55766 * 15 14 13 36 36 H 1.08998 * 109.52620 * 297.74970 * 15 14 13 37 37 H 1.09004 * 110.66494 * 278.15953 * 19 18 16 38 38 H 1.08996 * 110.66994 * 41.28331 * 19 18 16 39 39 H 1.09009 * 110.72302 * 204.22349 * 20 19 18 40 40 H 1.08996 * 110.87709 * 81.01781 * 20 19 18 41 41 H 1.08998 * 110.31306 * 263.04389 * 21 20 19 42 42 H 1.08995 * 110.30861 * 140.87159 * 21 20 19 43 43 H 1.08997 * 109.92159 * 333.50731 * 22 18 16 44 44 H 1.09001 * 109.91805 * 94.80327 * 22 18 16 45 45 H 1.09008 * 109.46456 * 294.17536 * 23 12 11 46 46 H 1.09003 * 109.46474 * 54.14041 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0006 13 6 3.2033 -6.1384 1.2503 14 6 4.2831 -7.2188 1.1573 15 6 3.6203 -8.5759 0.9058 16 6 2.7873 -8.4985 -0.3766 17 1 3.4409 -8.2864 -1.2229 18 7 2.1017 -9.7793 -0.5944 19 6 1.2338 -9.7206 -1.7982 20 6 1.0357 -11.2127 -2.1656 21 6 2.4169 -11.8322 -1.8518 22 6 3.0740 -10.8640 -0.8508 23 6 1.7508 -7.3810 -0.2392 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8538 -5.0446 -0.8913 30 1 0.8533 -5.0451 0.8886 31 1 3.6729 -5.1687 1.4151 32 1 2.5347 -6.3641 2.0811 33 1 4.9603 -6.9866 0.3353 34 1 4.8437 -7.2544 2.0914 35 1 4.3882 -9.3416 0.7957 36 1 2.9728 -8.8263 1.7461 37 1 0.2783 -9.2527 -1.5612 38 1 1.7337 -9.1883 -2.6074 39 1 0.7957 -11.3210 -3.2234 40 1 0.2605 -11.6653 -1.5474 41 1 3.0157 -11.9013 -2.7600 42 1 2.2961 -12.8174 -1.4015 43 1 3.9872 -10.4506 -1.2787 44 1 3.2999 -11.3873 0.0783 45 1 1.0889 -7.6006 0.5987 46 1 1.1654 -7.3137 -1.1562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309983825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:42 Heat of formation + Delta-G solvation = -13.812929 kcal Electronic energy + Delta-G solvation = -20689.699957 eV Core-core repulsion = 17805.949060 eV Total energy + Delta-G solvation = -2883.750897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.87617 -37.94151 -34.70394 -33.05430 -31.97285 -30.93527 -29.13096 -28.31572 -26.57027 -24.07768 -23.15883 -22.09061 -21.06607 -20.65740 -19.71401 -19.64440 -16.63929 -16.18423 -16.06441 -15.23667 -14.91203 -14.51978 -14.33405 -14.23888 -13.92479 -13.59957 -13.34467 -12.92049 -12.71595 -12.49210 -12.11698 -11.93465 -11.68047 -11.54288 -11.40418 -11.25040 -11.18334 -10.87996 -10.80624 -10.71935 -10.68206 -10.55923 -10.27903 -10.20676 -9.54235 -9.28499 -9.02675 -8.57337 -8.30821 -8.00710 -5.96362 -3.98364 3.35796 3.39771 3.42556 3.65379 4.26589 4.43420 4.45980 4.50195 4.71586 4.82414 4.90702 5.07299 5.08721 5.24560 5.30939 5.39226 5.40315 5.45517 5.54263 5.59026 5.59699 5.69718 5.72150 5.74861 5.76659 5.82677 5.91883 5.93166 5.97866 6.03754 6.12653 6.18124 6.35423 6.36886 6.71704 6.75075 6.81448 6.92287 7.17457 7.45008 7.45810 7.72206 7.87784 8.04372 8.47769 9.08714 9.65352 11.15132 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036804 B = 0.003189 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.614089 B = 8778.268487 C = 9273.535381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.059 3.941 12 N -0.539 5.539 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.109 4.109 16 C 0.081 3.919 17 H 0.051 0.949 18 N -0.515 5.515 19 C 0.033 3.967 20 C -0.124 4.124 21 C -0.132 4.132 22 C 0.038 3.962 23 C 0.064 3.936 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -23.418 -1.448 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.068 4.068 12 N -0.264 5.264 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.147 4.147 16 C -0.027 4.027 17 H 0.069 0.931 18 N -0.240 5.240 19 C -0.095 4.095 20 C -0.162 4.162 21 C -0.170 4.170 22 C -0.090 4.090 23 C -0.065 4.065 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.132 -23.318 -1.356 23.914 hybrid contribution 0.321 1.029 -0.062 1.080 sum 5.452 -22.289 -1.418 22.990 Atomic orbital electron populations 1.69956 1.06057 1.26640 1.51005 1.25027 0.94842 0.99225 0.95414 0.86661 0.79577 0.83166 0.78613 1.20237 1.21325 1.20271 1.21224 0.93009 0.91076 1.50376 0.92744 1.19068 0.94037 0.91386 0.97058 1.21653 0.99135 0.92686 1.00737 1.22261 0.93601 0.90813 1.00172 1.61936 1.26924 1.02704 1.34839 1.22145 0.95501 0.99806 0.90214 1.21577 0.97917 0.94023 1.01844 1.21595 0.98524 0.97283 0.97332 1.21818 0.94723 0.88336 0.97856 0.93149 1.64763 1.18529 1.04396 1.36328 1.23238 0.98172 0.96618 0.91455 1.22475 0.97328 0.95212 1.01155 1.22406 0.96565 0.99123 0.98897 1.22825 0.94399 0.92873 0.98924 1.22026 0.94810 0.88725 1.00917 0.92999 0.96647 0.96848 0.93425 0.92662 0.91336 0.95336 0.89810 0.95174 0.91271 0.91470 0.92284 0.91504 0.89891 0.93494 0.91169 0.90802 0.91642 0.91143 0.93779 0.90529 0.94425 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.22 5.08 -26.74 -0.14 -2.36 16 11 C 0.06 1.06 4.96 -3.83 -0.02 1.04 16 12 N -0.54 -8.46 4.66 -234.67 -1.09 -9.55 16 13 C 0.05 0.73 5.29 -3.84 -0.02 0.71 16 14 C -0.12 -1.35 6.09 -26.66 -0.16 -1.51 16 15 C -0.11 -1.21 5.23 -26.61 -0.14 -1.35 16 16 C 0.08 0.97 1.81 -67.63 -0.12 0.85 16 17 H 0.05 0.65 7.96 -51.92 -0.41 0.24 16 18 N -0.52 -5.57 5.11 -222.40 -1.14 -6.71 16 19 C 0.03 0.32 5.31 -1.90 -0.01 0.31 16 20 C -0.12 -0.98 7.06 -24.88 -0.18 -1.16 16 21 C -0.13 -0.99 6.93 -25.38 -0.18 -1.17 16 22 C 0.04 0.34 5.60 -2.75 -0.02 0.33 16 23 C 0.06 0.87 4.52 -3.84 -0.02 0.86 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 1.00 6.43 -51.93 -0.33 0.66 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.08 1.28 6.21 -51.93 -0.32 0.96 16 32 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.58 7.44 -51.93 -0.39 0.20 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 38 H 0.05 0.48 8.02 -51.93 -0.42 0.06 16 39 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.04 0.40 7.65 -51.93 -0.40 0.01 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 46 H 0.07 0.96 6.81 -51.93 -0.35 0.61 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -30.15 347.55 -11.72 -41.87 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -8.90 Total: -4.37 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.54 Total: -16.78 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -1.49 Total: -42.92 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.15 -11.72 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309983825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.056 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds