Wall clock time and date at job start Mon Mar 30 2020 00:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47051 * 240.00371 * 3 2 1 5 5 H 1.48497 * 109.46958 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47162 * 120.00198 * 3 2 1 7 7 C 1.37877 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47561 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47226 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46959 * 180.02562 * 11 10 9 13 13 C 1.46844 * 111.00328 * 65.78729 * 12 11 10 14 14 C 1.53032 * 109.52527 * 185.83771 * 13 12 11 15 15 C 1.53114 * 109.28141 * 300.82107 * 14 13 12 16 16 C 1.53123 * 109.16198 * 57.65126 * 15 14 13 17 17 H 1.09011 * 109.49940 * 62.28508 * 16 15 14 18 18 N 1.46900 * 109.50895 * 182.40522 * 16 15 14 19 19 C 1.48524 * 111.00361 * 177.40954 * 18 16 15 20 20 C 1.54934 * 103.22839 * 159.72234 * 19 18 16 21 21 C 1.54590 * 102.92176 * 322.58259 * 20 19 18 22 22 C 1.47903 * 110.99667 * 294.80612 * 18 16 15 23 23 C 1.46846 * 110.99942 * 189.99883 * 12 11 10 24 24 H 0.96998 * 120.00249 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47075 * 59.99591 * 9 7 2 26 26 H 1.09005 * 109.47026 * 300.00485 * 9 7 2 27 27 H 1.08995 * 109.47022 * 59.99784 * 10 9 7 28 28 H 1.09000 * 109.46737 * 299.99998 * 10 9 7 29 29 H 1.08995 * 109.47437 * 59.99865 * 11 10 9 30 30 H 1.09000 * 109.47120 * 299.99591 * 11 10 9 31 31 H 1.09000 * 109.46271 * 305.85568 * 13 12 11 32 32 H 1.09008 * 109.46154 * 65.83367 * 13 12 11 33 33 H 1.09000 * 109.50025 * 60.76400 * 14 13 12 34 34 H 1.09000 * 109.50523 * 180.83925 * 14 13 12 35 35 H 1.09000 * 109.52528 * 177.55766 * 15 14 13 36 36 H 1.08998 * 109.52620 * 297.74970 * 15 14 13 37 37 H 1.09004 * 110.66494 * 278.15953 * 19 18 16 38 38 H 1.08996 * 110.66994 * 41.28331 * 19 18 16 39 39 H 1.09009 * 110.72302 * 204.22349 * 20 19 18 40 40 H 1.08996 * 110.87709 * 81.01781 * 20 19 18 41 41 H 1.08998 * 110.31306 * 263.04389 * 21 20 19 42 42 H 1.08995 * 110.30861 * 140.87159 * 21 20 19 43 43 H 1.08997 * 109.92159 * 333.50731 * 22 18 16 44 44 H 1.09001 * 109.91805 * 94.80327 * 22 18 16 45 45 H 1.09008 * 109.46456 * 294.17536 * 23 12 11 46 46 H 1.09003 * 109.46474 * 54.14041 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0006 13 6 3.2033 -6.1384 1.2503 14 6 4.2831 -7.2188 1.1573 15 6 3.6203 -8.5759 0.9058 16 6 2.7873 -8.4985 -0.3766 17 1 3.4409 -8.2864 -1.2229 18 7 2.1017 -9.7793 -0.5944 19 6 1.2338 -9.7206 -1.7982 20 6 1.0357 -11.2127 -2.1656 21 6 2.4169 -11.8322 -1.8518 22 6 3.0740 -10.8640 -0.8508 23 6 1.7508 -7.3810 -0.2392 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8538 -5.0446 -0.8913 30 1 0.8533 -5.0451 0.8886 31 1 3.6729 -5.1687 1.4151 32 1 2.5347 -6.3641 2.0811 33 1 4.9603 -6.9866 0.3353 34 1 4.8437 -7.2544 2.0914 35 1 4.3882 -9.3416 0.7957 36 1 2.9728 -8.8263 1.7461 37 1 0.2783 -9.2527 -1.5612 38 1 1.7337 -9.1883 -2.6074 39 1 0.7957 -11.3210 -3.2234 40 1 0.2605 -11.6653 -1.5474 41 1 3.0157 -11.9013 -2.7600 42 1 2.2961 -12.8174 -1.4015 43 1 3.9872 -10.4506 -1.2787 44 1 3.2999 -11.3873 0.0783 45 1 1.0889 -7.6006 0.5987 46 1 1.1654 -7.3137 -1.1562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309983825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:41 Heat of formation + Delta-G solvation = -32.489123 kcal Electronic energy + Delta-G solvation = -20690.509817 eV Core-core repulsion = 17805.949060 eV Total energy + Delta-G solvation = -2884.560757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82926 -38.96550 -36.27636 -34.78995 -32.98401 -32.60928 -29.93718 -29.30595 -28.29079 -25.65129 -24.13527 -23.57714 -22.15743 -21.45442 -21.23892 -20.64698 -18.51393 -17.40239 -16.94173 -16.56519 -16.33664 -16.14968 -15.52276 -15.20724 -15.00486 -14.83345 -14.47118 -14.26128 -13.86665 -13.62584 -13.56860 -13.27899 -13.09642 -12.72647 -12.63547 -12.46463 -12.33867 -12.32313 -12.19026 -11.93694 -11.84126 -11.58614 -11.43910 -11.41775 -11.34718 -11.19009 -10.97260 -10.54803 -9.40729 -9.30151 -8.20368 -6.31704 1.39553 1.43076 1.51005 2.40531 2.67647 3.12540 3.21525 3.63303 3.74004 3.89817 3.96129 4.02313 4.10242 4.18355 4.27134 4.34915 4.36866 4.43901 4.53467 4.61973 4.67153 4.69442 4.75271 4.77468 4.86721 4.91724 4.94286 4.98644 5.00658 5.06105 5.07690 5.09743 5.12890 5.20794 5.27270 5.33675 5.40265 5.51107 5.73119 5.84877 5.91498 6.02007 6.08159 6.25483 6.27643 6.84825 7.37482 8.91542 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036804 B = 0.003189 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.614089 B = 8778.268487 C = 9273.535381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.070 3.930 12 N -0.543 5.543 13 C 0.048 3.952 14 C -0.108 4.108 15 C -0.104 4.104 16 C 0.089 3.911 17 H 0.041 0.959 18 N -0.524 5.524 19 C 0.028 3.972 20 C -0.120 4.120 21 C -0.128 4.128 22 C 0.035 3.965 23 C 0.067 3.933 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.011 1.011 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.031 0.969 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -24.501 -1.453 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.058 4.058 12 N -0.268 5.268 13 C -0.080 4.080 14 C -0.146 4.146 15 C -0.142 4.142 16 C -0.020 4.020 17 H 0.059 0.941 18 N -0.249 5.249 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.166 4.166 22 C -0.092 4.092 23 C -0.061 4.061 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.703 -24.427 -1.361 25.367 hybrid contribution -0.209 1.336 -0.061 1.354 sum 6.494 -23.091 -1.422 24.029 Atomic orbital electron populations 1.70092 1.07838 1.27875 1.51653 1.26004 0.95793 1.03428 0.94668 0.85487 0.78278 0.77970 0.79240 1.19144 1.20733 1.19089 1.21663 0.93535 0.92370 1.50631 0.92231 1.18960 0.94376 0.93100 0.94659 1.21384 0.97941 0.92511 1.00679 1.21986 0.93503 0.90491 0.99818 1.61901 1.26322 1.02796 1.35783 1.22222 0.95993 1.00343 0.89442 1.21545 0.96974 0.93250 1.02857 1.21557 0.98702 0.97336 0.96557 1.21691 0.93961 0.88309 0.98046 0.94081 1.64772 1.19062 1.04126 1.36952 1.23276 0.97612 0.98057 0.91005 1.22468 0.97747 0.93616 1.01939 1.22412 0.96077 0.99200 0.98935 1.22901 0.94070 0.92546 0.99715 1.22025 0.95275 0.88373 1.00423 0.92731 0.99054 0.99243 0.93003 0.92993 0.91591 0.95929 0.91020 0.95364 0.91481 0.89443 0.90489 0.91847 0.90629 0.94109 0.89962 0.90727 0.90818 0.89932 0.93831 0.89932 0.95121 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.79 5.08 30.59 0.16 -3.63 16 11 C 0.07 2.58 4.96 86.30 0.43 3.01 16 12 N -0.54 -16.97 4.66 -896.37 -4.17 -21.15 16 13 C 0.05 1.34 5.29 86.32 0.46 1.79 16 14 C -0.11 -2.34 6.09 30.64 0.19 -2.15 16 15 C -0.10 -2.10 5.23 30.67 0.16 -1.94 16 16 C 0.09 2.02 1.81 44.97 0.08 2.11 16 17 H 0.04 1.02 7.96 -2.38 -0.02 1.00 16 18 N -0.52 -10.65 5.11 -857.56 -4.38 -15.03 16 19 C 0.03 0.53 5.31 86.65 0.46 0.99 16 20 C -0.12 -1.69 7.06 31.80 0.22 -1.47 16 21 C -0.13 -1.63 6.93 31.47 0.22 -1.42 16 22 C 0.04 0.57 5.60 86.45 0.48 1.05 16 23 C 0.07 1.83 4.52 86.33 0.39 2.22 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 27 H 0.05 2.19 6.43 -2.39 -0.02 2.17 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.45 7.99 -2.39 -0.02 2.43 16 30 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 2.17 6.21 -2.39 -0.01 2.16 16 32 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.31 7.44 -2.39 -0.02 1.30 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.51 7.68 -2.39 -0.02 1.49 16 38 H 0.04 0.81 8.02 -2.39 -0.02 0.79 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.04 0.71 7.65 -2.39 -0.02 0.69 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.07 1.87 6.81 -2.39 -0.02 1.85 16 Total: -1.00 -64.64 347.55 -1.26 -65.90 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.90 Total: 10.10 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 4.09 Total: -29.10 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -8.27 Total: -93.92 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.64 -1.26 -65.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309983825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.408 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds