Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48495 * 109.47433 * 240.00191 * 3 2 1 5 5 H 1.48498 * 109.46723 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46808 * 119.99797 * 3 2 1 7 7 C 1.37876 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00232 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.53520 * 57.38878 * 9 7 2 11 11 C 1.54265 * 110.48582 * 294.78231 * 9 7 2 12 12 C 1.53878 * 106.59665 * 217.70720 * 11 9 7 13 13 C 1.54269 * 106.59803 * 359.97438 * 12 11 9 14 14 H 1.08995 * 110.60395 * 264.87775 * 13 12 11 15 15 N 1.46898 * 110.48484 * 142.28602 * 13 12 11 16 16 C 1.46906 * 110.99888 * 90.22716 * 15 13 12 17 17 H 1.08998 * 108.85316 * 36.44353 * 16 15 13 18 18 C 1.54059 * 108.87844 * 277.97593 * 16 15 13 19 19 C 1.54071 * 112.81996 * 197.50451 * 18 16 15 20 20 C 1.50471 * 112.49709 * 318.28818 * 19 18 16 21 21 C 1.54237 * 108.53084 * 94.14099 * 20 19 18 22 22 C 1.45537 * 112.40312 * 280.02074 * 21 20 19 23 23 C 1.50478 * 108.87742 * 154.99810 * 16 15 13 24 24 H 1.09002 * 109.62223 * 95.02953 * 23 16 15 25 25 N 1.46897 * 109.62822 * 334.64454 * 23 16 15 26 26 C 1.54880 * 110.48915 * 180.02562 * 9 7 2 27 27 H 0.96997 * 119.99808 * 0.02562 * 1 2 3 28 28 H 1.08992 * 110.03431 * 336.99083 * 11 9 7 29 29 H 1.08997 * 110.03638 * 98.37875 * 11 9 7 30 30 H 1.09000 * 110.03145 * 240.71527 * 12 11 9 31 31 H 1.08995 * 110.03215 * 119.28328 * 12 11 9 32 32 H 1.00902 * 111.00533 * 326.27122 * 15 13 12 33 33 H 1.09001 * 108.81309 * 318.37003 * 18 16 15 34 34 H 1.09001 * 108.81351 * 76.64379 * 18 16 15 35 35 H 1.08999 * 108.87676 * 197.50269 * 19 18 16 36 36 H 1.08998 * 108.87201 * 79.06382 * 19 18 16 37 37 H 1.09003 * 109.62678 * 334.42551 * 20 19 18 38 38 H 1.09004 * 109.78401 * 213.95018 * 20 19 18 39 39 H 1.08999 * 108.89741 * 159.26855 * 21 20 19 40 40 H 1.09006 * 108.89621 * 40.77770 * 21 20 19 41 41 H 1.09002 * 108.89544 * 301.18100 * 22 21 20 42 42 H 1.09000 * 108.81702 * 182.63855 * 22 21 20 43 43 H 1.00904 * 110.99861 * 179.97438 * 25 23 16 44 44 H 1.00899 * 111.00206 * 303.95395 * 25 23 16 45 45 H 1.09005 * 110.76007 * 38.31155 * 26 9 7 46 46 H 1.09007 * 110.92019 * 275.01224 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5831 -2.5551 -0.8601 11 6 0.4570 -2.6642 1.3117 12 6 0.5418 -4.1527 1.6926 13 6 1.3838 -4.8403 0.5980 14 1 0.7389 -5.2758 -0.1652 15 7 2.2496 -5.8707 1.1868 16 6 1.5717 -7.1736 1.2170 17 1 0.9622 -7.2744 0.3190 18 6 0.6507 -7.2279 2.4508 19 6 0.2302 -8.6634 2.8199 20 6 -0.1135 -9.4914 1.6114 21 6 1.1428 -10.2760 1.1814 22 6 2.0715 -9.4590 0.4145 23 6 2.6101 -8.2626 1.2253 24 1 2.8084 -8.5716 2.2516 25 7 3.8491 -7.7677 0.6108 26 6 2.2364 -3.6941 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 0.9014 -2.0522 2.0965 29 1 -0.5829 -2.3761 1.1578 30 1 -0.4572 -4.5877 1.7231 31 1 1.0273 -4.2630 2.6621 32 1 2.5564 -5.6012 2.1095 33 1 1.1731 -6.7855 3.2991 34 1 -0.2447 -6.6406 2.2472 35 1 -0.6393 -8.6185 3.4757 36 1 1.0489 -9.1439 3.3555 37 1 -0.4333 -8.8385 0.7992 38 1 -0.9143 -10.1887 1.8575 39 1 0.8365 -11.1273 0.5734 40 1 1.6504 -10.6455 2.0725 41 1 1.5616 -9.0834 -0.4727 42 1 2.9110 -10.0802 0.1021 43 1 4.5611 -8.4827 0.6059 44 1 3.6774 -7.4217 -0.3213 45 1 3.0993 -3.4833 0.6314 46 1 2.5527 -3.9378 -1.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331642127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = -23.367779 kcal Electronic energy + Delta-G solvation = -21469.918758 eV Core-core repulsion = 18585.753532 eV Total energy + Delta-G solvation = -2884.165226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68373 -37.35925 -34.49562 -33.82330 -32.20303 -30.62240 -28.45021 -27.95687 -26.08126 -24.29328 -23.40232 -22.93267 -20.83459 -19.75071 -18.96276 -18.89423 -16.28154 -16.04929 -15.83815 -14.90615 -14.62922 -14.61123 -14.43809 -14.05793 -13.56286 -13.35419 -13.25909 -12.68022 -12.30580 -12.20802 -11.90970 -11.90004 -11.44903 -11.34516 -11.06911 -10.90841 -10.80211 -10.73470 -10.56631 -10.43305 -10.37374 -10.25364 -9.93602 -9.67793 -9.44233 -8.99121 -8.63985 -8.33061 -8.29233 -7.68658 -5.92367 -3.94085 3.37730 3.41834 3.45055 4.39328 4.43921 4.52563 4.54985 4.86552 4.95811 5.10213 5.12302 5.16125 5.24062 5.33714 5.39715 5.55961 5.65953 5.73714 5.76079 5.80306 5.89289 5.94864 5.98636 6.01412 6.06010 6.11630 6.18514 6.29080 6.30873 6.37523 6.60105 6.79955 6.86353 6.98269 7.15548 7.24499 7.40659 7.45161 7.72535 7.77536 7.80371 7.96582 8.01084 8.13141 8.58363 9.09523 9.69416 11.17558 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.004048 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.884327 B = 6914.520121 C = 7351.607086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.027 0.973 11 C -0.095 4.095 12 C -0.150 4.150 13 C 0.080 3.920 14 H 0.065 0.935 15 N -0.654 5.654 16 C 0.093 3.907 17 H 0.068 0.932 18 C -0.145 4.145 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.154 4.154 23 C 0.107 3.893 24 H 0.074 0.926 25 N -0.816 5.816 26 C -0.096 4.096 27 H 0.258 0.742 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.339 0.661 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.325 0.675 44 H 0.345 0.655 45 H 0.058 0.942 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -19.953 3.556 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.045 0.955 11 C -0.134 4.134 12 C -0.189 4.189 13 C -0.030 4.030 14 H 0.083 0.917 15 N -0.283 5.283 16 C -0.018 4.018 17 H 0.086 0.914 18 C -0.185 4.185 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.194 4.194 23 C -0.006 4.006 24 H 0.092 0.908 25 N -0.344 5.344 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.159 0.841 45 H 0.077 0.923 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.479 -19.394 3.553 19.772 hybrid contribution -0.608 0.328 0.119 0.702 sum 0.871 -19.066 3.672 19.436 Atomic orbital electron populations 1.69968 1.05876 1.26348 1.50938 1.24987 0.94803 0.98935 0.95318 0.86732 0.79632 0.83465 0.78586 1.20326 1.21477 1.20351 1.21159 0.92797 0.90581 1.50228 0.92714 1.19444 0.92606 0.91860 0.93311 0.95501 1.22035 1.00634 0.90746 0.99959 1.22996 0.98403 0.99675 0.97836 1.22629 0.93137 0.91708 0.95509 0.91711 1.60726 1.38661 1.00708 1.28170 1.21477 0.92575 0.90802 0.96950 0.91416 1.22782 1.00411 0.96449 0.98844 1.21299 1.00804 0.95640 0.97640 1.21350 0.97146 0.98558 0.98557 1.20410 0.96210 0.98235 1.00227 1.21417 0.99395 0.98573 0.99980 1.21164 0.90081 0.91520 0.97814 0.90831 1.58650 1.08062 1.39616 1.28032 1.22494 0.98405 0.94079 0.98490 0.93203 0.93298 0.93189 0.94108 0.93489 0.84176 0.92144 0.91845 0.92611 0.92273 0.91600 0.92185 0.92763 0.92323 0.92198 0.92607 0.86364 0.84117 0.92295 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 12.63 55.43 0.70 -25.49 16 2 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.26 8.36 -34.44 -0.29 -14.55 16 8 H 0.05 1.52 7.77 -52.48 -0.41 1.11 16 9 C 0.05 1.18 2.72 -90.12 -0.25 0.93 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.10 -2.24 5.60 -25.61 -0.14 -2.39 16 12 C -0.15 -2.80 5.32 -25.61 -0.14 -2.93 16 13 C 0.08 1.41 3.16 -66.05 -0.21 1.20 16 14 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 15 N -0.65 -9.73 4.98 -98.75 -0.49 -10.22 16 16 C 0.09 1.14 1.83 -68.42 -0.13 1.02 16 17 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 18 C -0.15 -1.68 4.63 -25.62 -0.12 -1.80 16 19 C -0.12 -1.11 5.31 -27.43 -0.15 -1.26 16 20 C -0.12 -1.07 5.61 -27.35 -0.15 -1.22 16 21 C -0.11 -0.95 5.26 -29.60 -0.16 -1.10 16 22 C -0.15 -1.40 4.88 -29.60 -0.14 -1.55 16 23 C 0.11 1.14 2.83 -68.33 -0.19 0.95 16 24 H 0.07 0.81 7.00 -51.93 -0.36 0.45 16 25 N -0.82 -9.18 8.27 -5.19 -0.04 -9.22 16 26 C -0.10 -2.04 5.96 -24.74 -0.15 -2.19 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.05 1.23 7.83 -51.93 -0.41 0.83 16 29 H 0.05 1.26 8.06 -51.93 -0.42 0.84 16 30 H 0.04 0.72 7.37 -51.93 -0.38 0.34 16 31 H 0.05 0.83 7.52 -51.93 -0.39 0.44 16 32 H 0.34 5.24 7.57 -39.29 -0.30 4.94 16 33 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 34 H 0.06 0.81 6.85 -51.93 -0.36 0.46 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.54 6.64 -51.93 -0.34 0.20 16 37 H 0.07 0.66 6.97 -51.93 -0.36 0.29 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.48 7.47 -51.93 -0.39 0.09 16 41 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 42 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 43 H 0.32 3.04 8.98 -39.29 -0.35 2.69 16 44 H 0.35 4.12 8.87 -39.29 -0.35 3.77 16 45 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -28.01 336.12 -10.48 -38.48 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.39 Total: 7.94 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -2.30 Total: -23.26 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.17 Total: -44.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.01 -10.48 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331642127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.114 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds