Wall clock time and date at job start Mon Mar 30 2020 00:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48495 * 109.47433 * 240.00191 * 3 2 1 5 5 H 1.48498 * 109.46723 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46808 * 119.99797 * 3 2 1 7 7 C 1.37876 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00232 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.53520 * 57.38878 * 9 7 2 11 11 C 1.54265 * 110.48582 * 294.78231 * 9 7 2 12 12 C 1.53878 * 106.59665 * 217.70720 * 11 9 7 13 13 C 1.54269 * 106.59803 * 359.97438 * 12 11 9 14 14 H 1.08995 * 110.60395 * 264.87775 * 13 12 11 15 15 N 1.46898 * 110.48484 * 142.28602 * 13 12 11 16 16 C 1.46906 * 110.99888 * 90.22716 * 15 13 12 17 17 H 1.08998 * 108.85316 * 36.44353 * 16 15 13 18 18 C 1.54059 * 108.87844 * 277.97593 * 16 15 13 19 19 C 1.54071 * 112.81996 * 197.50451 * 18 16 15 20 20 C 1.50471 * 112.49709 * 318.28818 * 19 18 16 21 21 C 1.54237 * 108.53084 * 94.14099 * 20 19 18 22 22 C 1.45537 * 112.40312 * 280.02074 * 21 20 19 23 23 C 1.50478 * 108.87742 * 154.99810 * 16 15 13 24 24 H 1.09002 * 109.62223 * 95.02953 * 23 16 15 25 25 N 1.46897 * 109.62822 * 334.64454 * 23 16 15 26 26 C 1.54880 * 110.48915 * 180.02562 * 9 7 2 27 27 H 0.96997 * 119.99808 * 0.02562 * 1 2 3 28 28 H 1.08992 * 110.03431 * 336.99083 * 11 9 7 29 29 H 1.08997 * 110.03638 * 98.37875 * 11 9 7 30 30 H 1.09000 * 110.03145 * 240.71527 * 12 11 9 31 31 H 1.08995 * 110.03215 * 119.28328 * 12 11 9 32 32 H 1.00902 * 111.00533 * 326.27122 * 15 13 12 33 33 H 1.09001 * 108.81309 * 318.37003 * 18 16 15 34 34 H 1.09001 * 108.81351 * 76.64379 * 18 16 15 35 35 H 1.08999 * 108.87676 * 197.50269 * 19 18 16 36 36 H 1.08998 * 108.87201 * 79.06382 * 19 18 16 37 37 H 1.09003 * 109.62678 * 334.42551 * 20 19 18 38 38 H 1.09004 * 109.78401 * 213.95018 * 20 19 18 39 39 H 1.08999 * 108.89741 * 159.26855 * 21 20 19 40 40 H 1.09006 * 108.89621 * 40.77770 * 21 20 19 41 41 H 1.09002 * 108.89544 * 301.18100 * 22 21 20 42 42 H 1.09000 * 108.81702 * 182.63855 * 22 21 20 43 43 H 1.00904 * 110.99861 * 179.97438 * 25 23 16 44 44 H 1.00899 * 111.00206 * 303.95395 * 25 23 16 45 45 H 1.09005 * 110.76007 * 38.31155 * 26 9 7 46 46 H 1.09007 * 110.92019 * 275.01224 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5831 -2.5551 -0.8601 11 6 0.4570 -2.6642 1.3117 12 6 0.5418 -4.1527 1.6926 13 6 1.3838 -4.8403 0.5980 14 1 0.7389 -5.2758 -0.1652 15 7 2.2496 -5.8707 1.1868 16 6 1.5717 -7.1736 1.2170 17 1 0.9622 -7.2744 0.3190 18 6 0.6507 -7.2279 2.4508 19 6 0.2302 -8.6634 2.8199 20 6 -0.1135 -9.4914 1.6114 21 6 1.1428 -10.2760 1.1814 22 6 2.0715 -9.4590 0.4145 23 6 2.6101 -8.2626 1.2253 24 1 2.8084 -8.5716 2.2516 25 7 3.8491 -7.7677 0.6108 26 6 2.2364 -3.6941 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 0.9014 -2.0522 2.0965 29 1 -0.5829 -2.3761 1.1578 30 1 -0.4572 -4.5877 1.7231 31 1 1.0273 -4.2630 2.6621 32 1 2.5564 -5.6012 2.1095 33 1 1.1731 -6.7855 3.2991 34 1 -0.2447 -6.6406 2.2472 35 1 -0.6393 -8.6185 3.4757 36 1 1.0489 -9.1439 3.3555 37 1 -0.4333 -8.8385 0.7992 38 1 -0.9143 -10.1887 1.8575 39 1 0.8365 -11.1273 0.5734 40 1 1.6504 -10.6455 2.0725 41 1 1.5616 -9.0834 -0.4727 42 1 2.9110 -10.0802 0.1021 43 1 4.5611 -8.4827 0.6059 44 1 3.6774 -7.4217 -0.3213 45 1 3.0993 -3.4833 0.6314 46 1 2.5527 -3.9378 -1.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331642127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:22 Heat of formation + Delta-G solvation = -40.630140 kcal Electronic energy + Delta-G solvation = -21470.667311 eV Core-core repulsion = 18585.753532 eV Total energy + Delta-G solvation = -2884.913778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66192 -38.87482 -35.74768 -34.85320 -33.97988 -31.74953 -29.81577 -29.50493 -27.62493 -25.75516 -24.63593 -23.97987 -21.74798 -20.97869 -20.86842 -20.04124 -18.31423 -17.07883 -16.77497 -16.59984 -16.05656 -15.97831 -15.37370 -15.09010 -14.71659 -14.52947 -14.19881 -14.15569 -13.84254 -13.52440 -13.50115 -12.95568 -12.87029 -12.70053 -12.60929 -12.43072 -12.31820 -11.94048 -11.76213 -11.60363 -11.54695 -11.40008 -11.35569 -11.20674 -11.09458 -10.79086 -10.71891 -10.45528 -9.17735 -8.95883 -8.10000 -6.19297 1.41471 1.43211 1.50731 2.44957 3.20240 3.30460 3.61016 3.79419 4.01598 4.07828 4.10950 4.16447 4.23707 4.29046 4.34833 4.36584 4.46041 4.56198 4.70825 4.79739 4.88741 4.91924 4.96149 5.06457 5.07474 5.10648 5.18991 5.24146 5.26869 5.30002 5.32145 5.34494 5.40727 5.46197 5.47526 5.52949 5.55416 5.67654 5.95354 6.01737 6.32816 6.44316 6.60838 6.75101 6.92123 6.92893 7.47922 8.98991 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.004048 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.884327 B = 6914.520121 C = 7351.607086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.037 3.963 10 H -0.005 1.005 11 C -0.086 4.086 12 C -0.135 4.135 13 C 0.098 3.902 14 H 0.066 0.934 15 N -0.650 5.650 16 C 0.096 3.904 17 H 0.060 0.940 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.146 4.146 23 C 0.112 3.888 24 H 0.076 0.924 25 N -0.827 5.827 26 C -0.086 4.086 27 H 0.259 0.741 28 H 0.025 0.975 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.339 0.661 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.336 0.664 44 H 0.341 0.659 45 H 0.052 0.948 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -21.685 4.241 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.013 0.987 11 C -0.125 4.125 12 C -0.174 4.174 13 C -0.012 4.012 14 H 0.084 0.916 15 N -0.278 5.278 16 C -0.014 4.014 17 H 0.078 0.922 18 C -0.182 4.182 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.186 4.186 23 C 0.000 4.000 24 H 0.094 0.906 25 N -0.355 5.355 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.070 0.930 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.330 -21.154 4.243 21.701 hybrid contribution -0.873 0.858 -0.113 1.229 sum 1.457 -20.297 4.130 20.764 Atomic orbital electron populations 1.70099 1.07291 1.27125 1.51710 1.25781 0.95649 1.02448 0.94958 0.85701 0.78435 0.79170 0.78911 1.19548 1.21051 1.19615 1.21542 0.92941 0.92145 1.50187 0.92984 1.19441 0.93123 0.92868 0.92757 0.98706 1.21824 0.98305 0.93918 0.98452 1.22872 0.99745 0.96007 0.98815 1.22306 0.92383 0.91402 0.95110 0.91560 1.60654 1.38167 1.00893 1.28107 1.21531 0.93074 0.89740 0.97062 0.92220 1.22712 0.99478 0.97816 0.98161 1.21266 1.01287 0.94297 0.98067 1.21352 0.97873 0.98570 0.97815 1.20400 0.95725 0.98230 1.00592 1.21324 0.99837 0.98041 0.99373 1.21092 0.89416 0.91326 0.98180 0.90631 1.58634 1.08672 1.40486 1.27753 1.22307 0.97528 0.93812 0.98793 0.93232 0.95607 0.95811 0.92709 0.92008 0.84187 0.92423 0.93211 0.92138 0.91425 0.92814 0.91045 0.91806 0.91548 0.93117 0.91522 0.85076 0.84623 0.92958 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 12.63 21.45 0.27 -55.27 16 2 C 0.01 0.57 5.35 84.65 0.45 1.02 16 3 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.53 -30.36 8.36 25.60 0.21 -30.14 16 8 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 9 C 0.04 1.93 2.72 -10.47 -0.03 1.90 16 10 H -0.01 -0.31 8.14 -2.38 -0.02 -0.32 16 11 C -0.09 -4.19 5.60 31.32 0.18 -4.01 16 12 C -0.14 -4.98 5.32 31.32 0.17 -4.81 16 13 C 0.10 3.42 3.16 45.99 0.15 3.56 16 14 H 0.07 2.32 7.44 -2.39 -0.02 2.30 16 15 N -0.65 -18.43 4.98 -466.32 -2.32 -20.75 16 16 C 0.10 2.21 1.83 44.46 0.08 2.29 16 17 H 0.06 1.50 5.91 -2.39 -0.01 1.49 16 18 C -0.14 -3.03 4.63 31.31 0.14 -2.88 16 19 C -0.11 -1.86 5.31 30.14 0.16 -1.70 16 20 C -0.12 -1.85 5.61 30.20 0.17 -1.68 16 21 C -0.11 -1.56 5.26 28.73 0.15 -1.41 16 22 C -0.15 -2.31 4.88 28.73 0.14 -2.17 16 23 C 0.11 2.15 2.83 44.52 0.13 2.28 16 24 H 0.08 1.46 7.00 -2.39 -0.02 1.44 16 25 N -0.83 -17.01 8.27 -170.34 -1.41 -18.42 16 26 C -0.09 -3.66 5.96 31.88 0.19 -3.47 16 27 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.02 1.32 7.83 -2.39 -0.02 1.31 16 29 H 0.02 1.23 8.06 -2.39 -0.02 1.21 16 30 H 0.05 1.88 7.37 -2.39 -0.02 1.86 16 31 H 0.06 2.10 7.52 -2.39 -0.02 2.09 16 32 H 0.34 9.87 7.57 -89.69 -0.68 9.19 16 33 H 0.06 1.27 7.72 -2.39 -0.02 1.25 16 34 H 0.05 1.20 6.85 -2.39 -0.02 1.18 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.04 6.64 -2.39 -0.02 1.02 16 37 H 0.05 0.98 6.97 -2.39 -0.02 0.96 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.86 7.47 -2.38 -0.02 0.84 16 41 H 0.05 0.91 7.47 -2.39 -0.02 0.90 16 42 H 0.07 0.94 8.05 -2.39 -0.02 0.92 16 43 H 0.34 5.57 8.98 -89.69 -0.81 4.77 16 44 H 0.34 7.59 8.87 -89.69 -0.80 6.80 16 45 H 0.05 2.28 8.05 -2.38 -0.02 2.26 16 46 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -61.04 336.12 -0.46 -61.49 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -1.31 Total: 27.17 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 2.29 Total: -41.23 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.46 Total: -94.44 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.04 -0.46 -61.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331642127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.863 kcal (2) G-P(sol) polarization free energy of solvation -61.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds