Wall clock time and date at job start Mon Mar 30 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48503 * 109.46897 * 240.00163 * 3 2 1 5 5 H 1.48499 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46986 * 120.00343 * 3 2 1 7 7 C 1.37883 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00101 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.66804 * 61.78725 * 9 7 2 11 11 C 1.54886 * 110.75875 * 298.54932 * 9 7 2 12 12 C 1.54260 * 104.19535 * 203.55748 * 11 9 7 13 13 C 1.53873 * 106.59841 * 23.61340 * 12 11 9 14 14 H 1.09004 * 110.03422 * 240.66212 * 13 12 11 15 15 N 1.46906 * 110.03609 * 119.28495 * 13 12 11 16 16 C 1.46898 * 111.00057 * 86.45119 * 15 13 12 17 17 H 1.09002 * 108.76785 * 323.51236 * 16 15 13 18 18 C 1.54063 * 108.87955 * 82.02615 * 16 15 13 19 19 C 1.54064 * 112.81789 * 162.49057 * 18 16 15 20 20 C 1.50473 * 112.49962 * 41.72307 * 19 18 16 21 21 C 1.54246 * 108.52394 * 265.85087 * 20 19 18 22 22 C 1.45547 * 112.40077 * 79.97806 * 21 20 19 23 23 C 1.50476 * 108.87670 * 205.00312 * 16 15 13 24 24 H 1.08999 * 109.62905 * 264.77440 * 23 16 15 25 25 N 1.46898 * 109.62863 * 25.35866 * 23 16 15 26 26 C 1.54266 * 106.59882 * 359.97438 * 13 12 11 27 27 H 0.97005 * 119.99667 * 359.97438 * 1 2 3 28 28 H 1.09002 * 110.48649 * 84.87875 * 11 9 7 29 29 H 1.08996 * 110.48708 * 322.24074 * 11 9 7 30 30 H 1.08994 * 110.03538 * 264.32342 * 12 11 9 31 31 H 1.08999 * 110.07350 * 142.91595 * 12 11 9 32 32 H 1.00896 * 110.99951 * 210.40917 * 15 13 12 33 33 H 1.09002 * 108.81504 * 283.35937 * 18 16 15 34 34 H 1.09006 * 108.80873 * 41.62839 * 18 16 15 35 35 H 1.09003 * 108.87757 * 280.93903 * 19 18 16 36 36 H 1.09002 * 108.87323 * 162.49610 * 19 18 16 37 37 H 1.08994 * 109.62924 * 146.14287 * 20 19 18 38 38 H 1.09000 * 109.62614 * 25.55950 * 20 19 18 39 39 H 1.08997 * 108.89573 * 319.22626 * 21 20 19 40 40 H 1.09003 * 108.89493 * 200.72741 * 21 20 19 41 41 H 1.09001 * 108.89434 * 177.30529 * 22 21 20 42 42 H 1.09002 * 108.81397 * 58.76125 * 22 21 20 43 43 H 1.00895 * 111.00319 * 179.97438 * 25 23 16 44 44 H 1.00899 * 110.99915 * 303.95587 * 25 23 16 45 45 H 1.09006 * 110.48267 * 95.07069 * 26 13 12 46 46 H 1.09001 * 110.49003 * 217.71071 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7465 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6406 -2.5911 -0.8990 11 6 0.3774 -2.6287 1.2720 12 6 0.1788 -4.1491 1.4413 13 6 1.3519 -4.8294 0.7141 14 1 0.9760 -5.4656 -0.0872 15 7 2.1375 -5.6285 1.6640 16 6 1.5756 -6.9782 1.8072 17 1 0.4887 -6.9127 1.7576 18 6 2.0760 -7.8529 0.6418 19 6 1.9110 -9.3605 0.9126 20 6 0.5938 -9.6882 1.5620 21 6 0.7973 -9.7274 3.0905 22 6 0.8109 -8.3979 3.6826 23 6 1.9693 -7.5293 3.1510 24 1 2.8668 -8.1391 3.0480 25 7 2.2241 -6.4226 4.0828 26 6 2.2221 -3.6986 0.1277 27 1 -0.4850 0.8401 0.0004 28 1 -0.5822 -2.1323 1.1281 29 1 0.8972 -2.2134 2.1353 30 1 -0.7664 -4.4545 0.9924 31 1 0.1919 -4.4126 2.4989 32 1 3.1072 -5.6679 1.3880 33 1 1.5169 -7.5939 -0.2573 34 1 3.1312 -7.6398 0.4704 35 1 2.7184 -9.6919 1.5657 36 1 1.9815 -9.8984 -0.0328 37 1 0.2458 -10.6606 1.2140 38 1 -0.1393 -8.9220 1.3099 39 1 1.7449 -10.2203 3.3079 40 1 -0.0104 -10.3055 3.5394 41 1 0.9092 -8.4940 4.7639 42 1 -0.1338 -7.9030 3.4570 43 1 2.4898 -6.7695 4.9922 44 1 2.9241 -5.7952 3.7161 45 1 3.0399 -3.4557 0.8062 46 1 2.6088 -3.9832 -0.8509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331642136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:27 Heat of formation + Delta-G solvation = -20.335057 kcal Electronic energy + Delta-G solvation = -21509.795544 eV Core-core repulsion = 18625.761827 eV Total energy + Delta-G solvation = -2884.033717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64924 -37.29055 -34.55177 -33.67556 -32.23958 -30.62968 -28.53275 -27.96620 -26.14467 -24.12032 -23.63286 -23.03107 -20.61786 -19.56541 -18.99346 -18.54610 -16.36935 -15.99930 -15.77680 -15.25913 -14.59274 -14.46067 -14.34527 -13.98448 -13.87593 -13.50560 -13.27745 -12.64346 -12.43807 -12.12389 -11.92469 -11.86055 -11.54390 -10.98626 -10.91223 -10.77777 -10.71878 -10.61252 -10.55707 -10.43612 -10.36232 -10.27443 -9.86877 -9.76031 -9.31386 -9.02153 -8.66187 -8.27555 -8.25729 -7.87380 -5.90938 -3.93481 3.37628 3.42138 3.44644 4.38202 4.45266 4.52774 4.55819 4.84812 4.98553 5.04303 5.12313 5.26580 5.28965 5.37562 5.41459 5.55707 5.64595 5.75212 5.80326 5.85897 5.90353 5.98673 6.01994 6.06085 6.10522 6.14074 6.23649 6.28291 6.37336 6.51774 6.61519 6.82325 6.93711 7.04609 7.12084 7.28228 7.45461 7.52721 7.76330 7.80843 7.85908 7.89523 8.05983 8.15786 8.56346 9.08294 9.69737 11.18236 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.004035 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.730165 B = 6937.920337 C = 7065.037094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.052 3.948 10 H 0.025 0.975 11 C -0.095 4.095 12 C -0.116 4.116 13 C 0.087 3.913 14 H 0.029 0.971 15 N -0.665 5.665 16 C 0.093 3.907 17 H 0.078 0.922 18 C -0.147 4.147 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.112 4.112 23 C 0.110 3.890 24 H 0.025 0.975 25 N -0.827 5.827 26 C -0.118 4.118 27 H 0.259 0.741 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.328 0.672 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.324 0.676 44 H 0.355 0.645 45 H 0.063 0.937 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -19.277 5.017 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.033 3.967 10 H 0.043 0.957 11 C -0.133 4.133 12 C -0.154 4.154 13 C -0.022 4.022 14 H 0.047 0.953 15 N -0.295 5.295 16 C -0.017 4.017 17 H 0.097 0.903 18 C -0.187 4.187 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.002 4.002 24 H 0.043 0.957 25 N -0.360 5.360 26 C -0.156 4.156 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.172 0.828 45 H 0.082 0.918 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.725 -18.676 5.444 19.529 hybrid contribution 1.665 0.108 -0.903 1.897 sum 3.391 -18.568 4.541 19.413 Atomic orbital electron populations 1.69963 1.05842 1.26332 1.50726 1.24964 0.94805 0.98871 0.95244 0.86729 0.79635 0.83514 0.78493 1.20453 1.21411 1.20328 1.21092 0.92655 0.90655 1.50582 0.92911 1.19498 0.92113 0.91068 0.93977 0.95730 1.22203 1.00988 0.90809 0.99296 1.22278 0.94945 0.98384 0.99834 1.22249 0.94971 0.93645 0.91308 0.95316 1.60797 1.05302 1.11630 1.51722 1.21474 1.00128 0.87905 0.92237 0.90341 1.22726 1.01066 0.95216 0.99700 1.21273 0.97743 0.95774 1.00372 1.21369 0.97854 1.01393 0.95121 1.20484 1.01560 0.97590 0.95696 1.20479 0.99424 0.95169 0.99987 1.20917 0.95810 0.91039 0.92423 0.95732 1.58461 1.54693 1.18693 1.04145 1.22631 0.98996 0.96074 0.97877 0.93162 0.91886 0.93504 0.94385 0.91690 0.85448 0.92136 0.92421 0.92316 0.92633 0.92146 0.91410 0.92557 0.92342 0.92237 0.91555 0.86479 0.82767 0.91845 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 12.02 55.43 0.67 -25.44 16 2 C 0.06 1.77 5.33 -17.82 -0.10 1.67 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.32 8.55 -34.44 -0.29 -14.61 16 8 H 0.05 1.45 7.79 -52.49 -0.41 1.04 16 9 C 0.05 1.33 2.81 -89.80 -0.25 1.07 16 10 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.09 -2.30 5.57 -25.08 -0.14 -2.44 16 12 C -0.12 -2.34 6.36 -25.62 -0.16 -2.50 16 13 C 0.09 1.57 3.01 -66.59 -0.20 1.37 16 14 H 0.03 0.51 7.14 -51.93 -0.37 0.14 16 15 N -0.67 -9.89 4.00 -99.31 -0.40 -10.29 16 16 C 0.09 1.19 1.76 -68.42 -0.12 1.07 16 17 H 0.08 1.15 6.18 -51.93 -0.32 0.83 16 18 C -0.15 -1.66 5.12 -25.62 -0.13 -1.79 16 19 C -0.11 -1.07 5.31 -27.44 -0.15 -1.22 16 20 C -0.12 -1.10 5.61 -27.34 -0.15 -1.25 16 21 C -0.12 -1.02 5.26 -29.59 -0.16 -1.18 16 22 C -0.11 -1.17 4.90 -29.60 -0.14 -1.32 16 23 C 0.11 1.26 2.88 -68.33 -0.20 1.07 16 24 H 0.02 0.28 6.98 -51.93 -0.36 -0.09 16 25 N -0.83 -10.23 8.91 -5.19 -0.05 -10.27 16 26 C -0.12 -2.44 5.68 -25.09 -0.14 -2.59 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.06 1.67 7.37 -51.93 -0.38 1.29 16 29 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.31 7.92 -51.93 -0.41 0.90 16 32 H 0.33 4.60 7.86 -39.29 -0.31 4.29 16 33 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 34 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 35 H 0.06 0.54 6.63 -51.93 -0.34 0.19 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.70 6.98 -51.93 -0.36 0.33 16 39 H 0.06 0.47 7.47 -51.93 -0.39 0.09 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.59 8.05 -51.93 -0.42 0.18 16 42 H 0.07 0.79 7.47 -51.93 -0.39 0.40 16 43 H 0.32 3.37 8.98 -39.29 -0.35 3.02 16 44 H 0.36 4.62 7.64 -39.29 -0.30 4.32 16 45 H 0.06 1.33 7.88 -51.93 -0.41 0.92 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -28.37 336.72 -10.47 -38.84 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.41 Total: 8.06 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.34 Total: -22.64 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.22 Total: -46.00 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.37 -10.47 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331642136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.504 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds