Wall clock time and date at job start Mon Mar 30 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48503 * 109.46897 * 240.00163 * 3 2 1 5 5 H 1.48499 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46986 * 120.00343 * 3 2 1 7 7 C 1.37883 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00101 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.66804 * 61.78725 * 9 7 2 11 11 C 1.54886 * 110.75875 * 298.54932 * 9 7 2 12 12 C 1.54260 * 104.19535 * 203.55748 * 11 9 7 13 13 C 1.53873 * 106.59841 * 23.61340 * 12 11 9 14 14 H 1.09004 * 110.03422 * 240.66212 * 13 12 11 15 15 N 1.46906 * 110.03609 * 119.28495 * 13 12 11 16 16 C 1.46898 * 111.00057 * 86.45119 * 15 13 12 17 17 H 1.09002 * 108.76785 * 323.51236 * 16 15 13 18 18 C 1.54063 * 108.87955 * 82.02615 * 16 15 13 19 19 C 1.54064 * 112.81789 * 162.49057 * 18 16 15 20 20 C 1.50473 * 112.49962 * 41.72307 * 19 18 16 21 21 C 1.54246 * 108.52394 * 265.85087 * 20 19 18 22 22 C 1.45547 * 112.40077 * 79.97806 * 21 20 19 23 23 C 1.50476 * 108.87670 * 205.00312 * 16 15 13 24 24 H 1.08999 * 109.62905 * 264.77440 * 23 16 15 25 25 N 1.46898 * 109.62863 * 25.35866 * 23 16 15 26 26 C 1.54266 * 106.59882 * 359.97438 * 13 12 11 27 27 H 0.97005 * 119.99667 * 359.97438 * 1 2 3 28 28 H 1.09002 * 110.48649 * 84.87875 * 11 9 7 29 29 H 1.08996 * 110.48708 * 322.24074 * 11 9 7 30 30 H 1.08994 * 110.03538 * 264.32342 * 12 11 9 31 31 H 1.08999 * 110.07350 * 142.91595 * 12 11 9 32 32 H 1.00896 * 110.99951 * 210.40917 * 15 13 12 33 33 H 1.09002 * 108.81504 * 283.35937 * 18 16 15 34 34 H 1.09006 * 108.80873 * 41.62839 * 18 16 15 35 35 H 1.09003 * 108.87757 * 280.93903 * 19 18 16 36 36 H 1.09002 * 108.87323 * 162.49610 * 19 18 16 37 37 H 1.08994 * 109.62924 * 146.14287 * 20 19 18 38 38 H 1.09000 * 109.62614 * 25.55950 * 20 19 18 39 39 H 1.08997 * 108.89573 * 319.22626 * 21 20 19 40 40 H 1.09003 * 108.89493 * 200.72741 * 21 20 19 41 41 H 1.09001 * 108.89434 * 177.30529 * 22 21 20 42 42 H 1.09002 * 108.81397 * 58.76125 * 22 21 20 43 43 H 1.00895 * 111.00319 * 179.97438 * 25 23 16 44 44 H 1.00899 * 110.99915 * 303.95587 * 25 23 16 45 45 H 1.09006 * 110.48267 * 95.07069 * 26 13 12 46 46 H 1.09001 * 110.49003 * 217.71071 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7465 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6406 -2.5911 -0.8990 11 6 0.3774 -2.6287 1.2720 12 6 0.1788 -4.1491 1.4413 13 6 1.3519 -4.8294 0.7141 14 1 0.9760 -5.4656 -0.0872 15 7 2.1375 -5.6285 1.6640 16 6 1.5756 -6.9782 1.8072 17 1 0.4887 -6.9127 1.7576 18 6 2.0760 -7.8529 0.6418 19 6 1.9110 -9.3605 0.9126 20 6 0.5938 -9.6882 1.5620 21 6 0.7973 -9.7274 3.0905 22 6 0.8109 -8.3979 3.6826 23 6 1.9693 -7.5293 3.1510 24 1 2.8668 -8.1391 3.0480 25 7 2.2241 -6.4226 4.0828 26 6 2.2221 -3.6986 0.1277 27 1 -0.4850 0.8401 0.0004 28 1 -0.5822 -2.1323 1.1281 29 1 0.8972 -2.2134 2.1353 30 1 -0.7664 -4.4545 0.9924 31 1 0.1919 -4.4126 2.4989 32 1 3.1072 -5.6679 1.3880 33 1 1.5169 -7.5939 -0.2573 34 1 3.1312 -7.6398 0.4704 35 1 2.7184 -9.6919 1.5657 36 1 1.9815 -9.8984 -0.0328 37 1 0.2458 -10.6606 1.2140 38 1 -0.1393 -8.9220 1.3099 39 1 1.7449 -10.2203 3.3079 40 1 -0.0104 -10.3055 3.5394 41 1 0.9092 -8.4940 4.7639 42 1 -0.1338 -7.9030 3.4570 43 1 2.4898 -6.7695 4.9922 44 1 2.9241 -5.7952 3.7161 45 1 3.0399 -3.4557 0.8062 46 1 2.6088 -3.9832 -0.8509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331642136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:27 Heat of formation + Delta-G solvation = -37.481841 kcal Electronic energy + Delta-G solvation = -21510.539085 eV Core-core repulsion = 18625.761827 eV Total energy + Delta-G solvation = -2884.777258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65691 -38.83319 -35.81064 -34.74507 -34.01333 -31.79555 -29.87098 -29.60244 -27.69988 -25.64525 -24.90947 -24.03612 -21.54187 -21.17262 -20.47518 -19.85174 -18.37507 -16.94220 -16.79045 -16.74941 -16.54063 -15.77426 -15.32516 -15.14458 -14.73590 -14.66546 -14.39101 -14.16717 -13.88992 -13.63536 -13.31220 -12.96057 -12.84868 -12.76253 -12.67353 -12.36792 -11.97925 -11.85263 -11.72904 -11.63936 -11.44729 -11.36191 -11.29124 -11.23103 -11.16991 -10.86015 -10.76353 -10.41901 -9.22979 -9.09093 -8.07896 -6.18132 1.42306 1.44283 1.51589 2.45744 3.22294 3.25761 3.55288 3.76784 4.03229 4.06604 4.11157 4.19420 4.19953 4.27270 4.37194 4.40294 4.48493 4.57194 4.71844 4.76292 4.85448 4.91646 5.00943 5.06741 5.10556 5.14186 5.21337 5.22981 5.26357 5.31648 5.32168 5.38102 5.41586 5.43718 5.48251 5.56958 5.58168 5.69888 5.95147 6.04912 6.28917 6.42435 6.58616 6.72468 6.92423 6.94181 7.48972 9.00384 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.004035 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.730165 B = 6937.920337 C = 7065.037094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.041 3.959 10 H -0.006 1.006 11 C -0.085 4.085 12 C -0.103 4.103 13 C 0.103 3.897 14 H 0.036 0.964 15 N -0.664 5.664 16 C 0.098 3.902 17 H 0.059 0.941 18 C -0.143 4.143 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.107 4.107 23 C 0.114 3.886 24 H 0.037 0.963 25 N -0.841 5.841 26 C -0.105 4.105 27 H 0.259 0.741 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.335 0.665 44 H 0.351 0.649 45 H 0.062 0.938 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -20.961 5.444 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.022 3.978 10 H 0.013 0.987 11 C -0.123 4.123 12 C -0.142 4.142 13 C -0.006 4.006 14 H 0.054 0.946 15 N -0.295 5.295 16 C -0.013 4.013 17 H 0.077 0.923 18 C -0.183 4.183 19 C -0.148 4.148 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.146 4.146 23 C 0.002 3.998 24 H 0.055 0.945 25 N -0.375 5.375 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.167 0.833 45 H 0.081 0.919 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.136 -20.385 5.879 21.446 hybrid contribution 1.200 0.633 -1.029 1.703 sum 4.336 -19.752 4.849 20.796 Atomic orbital electron populations 1.70106 1.07307 1.27087 1.51502 1.25782 0.95646 1.02457 0.94895 0.85685 0.78408 0.79144 0.78855 1.19533 1.21117 1.19622 1.21489 0.92940 0.92078 1.50456 0.92849 1.19497 0.92933 0.92429 0.92918 0.98750 1.21978 0.98836 0.93489 0.98021 1.22130 0.96336 0.95378 1.00332 1.21915 0.93872 0.93222 0.91624 0.94604 1.60681 1.05487 1.12855 1.50433 1.21488 0.98897 0.87064 0.93839 0.92275 1.22657 1.00952 0.96388 0.98304 1.21253 0.98161 0.94217 1.01119 1.21374 0.97338 1.01658 0.95385 1.20458 1.02554 0.96680 0.95387 1.20449 0.97965 0.95690 1.00469 1.20911 0.96591 0.90948 0.91358 0.94545 1.58465 1.54743 1.19235 1.05017 1.22445 0.98165 0.94979 0.98739 0.93240 0.94960 0.95478 0.93949 0.91509 0.84433 0.93286 0.91945 0.91407 0.91757 0.90735 0.92945 0.91436 0.91382 0.91655 0.93450 0.85234 0.83271 0.91912 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.41 12.02 21.45 0.26 -55.16 16 2 C 0.01 0.61 5.33 84.66 0.45 1.06 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.53 -30.21 8.55 25.60 0.22 -30.00 16 8 H 0.05 2.95 7.79 -2.91 -0.02 2.93 16 9 C 0.04 2.14 2.81 -10.26 -0.03 2.11 16 10 H -0.01 -0.33 8.14 -2.38 -0.02 -0.34 16 11 C -0.08 -4.26 5.57 31.67 0.18 -4.09 16 12 C -0.10 -4.20 6.36 31.32 0.20 -4.00 16 13 C 0.10 3.65 3.01 45.64 0.14 3.79 16 14 H 0.04 1.24 7.14 -2.39 -0.02 1.22 16 15 N -0.66 -18.86 4.00 -468.10 -1.87 -20.73 16 16 C 0.10 2.35 1.76 44.46 0.08 2.42 16 17 H 0.06 1.68 6.18 -2.39 -0.01 1.67 16 18 C -0.14 -2.94 5.12 31.31 0.16 -2.78 16 19 C -0.11 -1.77 5.31 30.14 0.16 -1.61 16 20 C -0.12 -1.91 5.61 30.20 0.17 -1.75 16 21 C -0.11 -1.71 5.26 28.74 0.15 -1.56 16 22 C -0.11 -2.05 4.90 28.74 0.14 -1.90 16 23 C 0.11 2.38 2.88 44.52 0.13 2.51 16 24 H 0.04 0.70 6.98 -2.39 -0.02 0.68 16 25 N -0.84 -19.47 8.91 -170.34 -1.52 -20.99 16 26 C -0.11 -4.33 5.68 31.66 0.18 -4.15 16 27 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 28 H 0.03 1.78 7.37 -2.39 -0.02 1.76 16 29 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.68 7.92 -2.39 -0.02 2.66 16 32 H 0.34 8.78 7.86 -89.70 -0.71 8.08 16 33 H 0.05 1.12 7.56 -2.39 -0.02 1.10 16 34 H 0.06 1.23 7.72 -2.38 -0.02 1.21 16 35 H 0.07 1.00 6.63 -2.39 -0.02 0.98 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 1.01 6.98 -2.39 -0.02 0.99 16 39 H 0.07 0.90 7.47 -2.39 -0.02 0.88 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.17 8.05 -2.39 -0.02 1.15 16 42 H 0.05 1.08 7.47 -2.39 -0.02 1.07 16 43 H 0.34 6.38 8.98 -89.70 -0.81 5.57 16 44 H 0.35 8.60 7.64 -89.70 -0.69 7.92 16 45 H 0.06 2.58 7.88 -2.38 -0.02 2.56 16 46 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.71 336.72 -0.01 -61.73 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -1.23 Total: 28.28 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 2.32 Total: -39.93 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.13 Total: -96.88 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -61.71 -0.01 -61.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331642136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.246 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds