Wall clock time and date at job start Mon Mar 30 2020 01:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46306 * 2 1 4 4 C 1.53030 * 109.46354 * 119.98107 * 2 1 3 5 5 C 1.53100 * 109.28954 * 179.19243 * 4 2 1 6 6 C 1.53113 * 109.15396 * 302.33428 * 5 4 2 7 7 C 1.53044 * 109.27914 * 57.65808 * 6 5 4 8 8 N 1.46848 * 109.52164 * 300.82048 * 7 6 5 9 9 C 1.46890 * 111.00364 * 185.83793 * 8 7 6 10 10 C 1.52998 * 109.47489 * 146.47036 * 9 8 7 11 11 H 1.08995 * 109.49690 * 56.76038 * 10 9 8 12 12 C 1.53045 * 109.49772 * 176.81954 * 10 9 8 13 13 C 1.53044 * 109.53691 * 181.31640 * 12 10 9 14 14 C 1.53192 * 109.31056 * 298.63790 * 13 12 10 15 15 N 1.46925 * 108.77665 * 54.63473 * 14 13 12 16 16 C 1.36937 * 120.62703 * 126.36921 * 15 14 13 17 17 H 1.08001 * 120.00239 * 332.80830 * 16 15 14 18 18 C 1.38817 * 120.00188 * 152.81370 * 16 15 14 19 19 N 1.31612 * 120.00627 * 160.25239 * 18 16 15 20 20 Si 1.86803 * 119.99387 * 340.25016 * 18 16 15 21 21 H 1.48487 * 109.47306 * 94.95841 * 20 18 16 22 22 H 1.48507 * 109.46646 * 214.96002 * 20 18 16 23 23 H 1.48503 * 109.47286 * 334.95189 * 20 18 16 24 24 C 1.46919 * 118.74084 * 306.38924 * 15 14 13 25 25 H 1.08998 * 109.47621 * 171.34378 * 1 2 3 26 26 H 1.09005 * 109.46730 * 291.34304 * 1 2 3 27 27 H 1.09005 * 109.47298 * 51.33704 * 1 2 3 28 28 H 1.09004 * 109.50592 * 299.11999 * 4 2 1 29 29 H 1.08997 * 109.50825 * 59.23815 * 4 2 1 30 30 H 1.09001 * 109.52667 * 182.43324 * 5 4 2 31 31 H 1.08999 * 109.57740 * 62.27458 * 5 4 2 32 32 H 1.08993 * 109.51102 * 297.71923 * 6 5 4 33 33 H 1.09006 * 109.50415 * 177.59249 * 6 5 4 34 34 H 1.08997 * 109.46533 * 180.80068 * 7 6 5 35 35 H 1.09006 * 109.45339 * 60.82424 * 7 6 5 36 36 H 1.08999 * 109.47432 * 266.47491 * 9 8 7 37 37 H 1.09007 * 109.47321 * 26.46736 * 9 8 7 38 38 H 1.08992 * 109.46366 * 301.33954 * 12 10 9 39 39 H 1.09004 * 109.45824 * 61.31133 * 12 10 9 40 40 H 1.08994 * 109.49731 * 58.58717 * 13 12 10 41 41 H 1.08996 * 109.49726 * 178.65257 * 13 12 10 42 42 H 1.09006 * 109.58379 * 174.42500 * 14 13 12 43 43 H 1.08996 * 109.59078 * 294.84508 * 14 13 12 44 44 H 0.96992 * 120.00320 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.58816 * 293.82292 * 24 15 14 46 46 H 1.09000 * 109.58778 * 173.39782 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2498 5 6 3.5708 -0.7364 1.2356 6 6 4.0545 -1.4193 -0.0466 7 6 3.4864 -0.6781 -1.2591 8 7 2.0192 -0.6918 -1.1994 9 6 1.4373 -0.1106 -2.4165 10 6 0.1242 -0.8238 -2.7449 11 1 -0.5518 -0.7518 -1.8929 12 6 -0.5223 -0.1667 -3.9666 13 6 -1.8520 -0.8583 -4.2761 14 6 -1.5927 -2.3329 -4.6005 15 7 -0.8425 -2.9364 -3.4907 16 6 -1.2985 -4.0723 -2.8766 17 1 -2.3557 -4.2930 -2.8656 18 6 -0.4020 -4.9401 -2.2682 19 7 -0.8264 -5.7981 -1.3649 20 14 1.4070 -4.8900 -2.7316 21 1 2.1397 -4.0244 -1.7731 22 1 1.9677 -6.2643 -2.6862 23 1 1.5514 -4.3416 -4.1041 24 6 0.4058 -2.2979 -3.0520 25 1 -0.3634 -1.0159 -0.1547 26 1 -0.3633 0.3740 0.9573 27 1 -0.3634 0.6420 -0.8025 28 1 1.6898 -0.1983 2.1399 29 1 1.6657 -1.7447 1.2575 30 1 3.9376 -1.2866 2.1021 31 1 3.9466 0.2863 1.2678 32 1 3.7120 -2.4539 -0.0594 33 1 5.1437 -1.3953 -0.0830 34 1 3.8174 -1.1703 -2.1735 35 1 3.8404 0.3529 -1.2530 36 1 1.2445 0.9502 -2.2563 37 1 2.1340 -0.2319 -3.2461 38 1 -0.7013 0.8882 -3.7595 39 1 0.1438 -0.2605 -4.8244 40 1 -2.5096 -0.7866 -3.4098 41 1 -2.3233 -0.3745 -5.1316 42 1 -2.5430 -2.8523 -4.7245 43 1 -1.0104 -2.4081 -5.5187 44 1 -0.2000 -6.4047 -0.9401 45 1 1.1512 -2.3702 -3.8440 46 1 0.7742 -2.7943 -2.1542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334331924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:01 Heat of formation + Delta-G solvation = 14.575150 kcal Electronic energy + Delta-G solvation = -22562.862276 eV Core-core repulsion = 19680.342379 eV Total energy + Delta-G solvation = -2882.519897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.48841 -37.55325 -34.12476 -32.73839 -32.25102 -30.75399 -30.24281 -27.10764 -25.46903 -25.09160 -22.95832 -22.25103 -21.38813 -20.37786 -19.55959 -19.11373 -16.65558 -15.68801 -15.47790 -14.89663 -14.57211 -14.26496 -13.98729 -13.69355 -13.52277 -13.27425 -13.07247 -12.96145 -12.49244 -12.19906 -11.95779 -11.88874 -11.63305 -11.56037 -11.33885 -11.30051 -10.84552 -10.65570 -10.49695 -10.40363 -10.30897 -10.23438 -10.04942 -9.80086 -9.55714 -9.40081 -9.19989 -8.44677 -7.96213 -6.79405 -5.80948 -3.15650 3.53791 3.61009 3.64945 4.04962 4.69242 4.87763 4.93007 4.98498 5.09092 5.25445 5.36697 5.42438 5.47379 5.50724 5.54285 5.59948 5.63212 5.69311 5.72661 5.83147 5.87012 5.97518 5.99424 6.03695 6.11163 6.13961 6.20907 6.26569 6.29503 6.33678 6.37607 6.45198 6.50344 6.55128 6.63967 6.75555 6.80474 6.91319 7.07372 7.19579 7.43585 7.44645 8.12640 8.46360 9.10906 9.88481 10.27641 11.35077 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.008968 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.920502 B = 3121.554897 C = 4005.264215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.089 3.911 3 H 0.032 0.968 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.120 4.120 7 C 0.059 3.941 8 N -0.529 5.529 9 C 0.065 3.935 10 C -0.112 4.112 11 H 0.090 0.910 12 C -0.105 4.105 13 C -0.133 4.133 14 C 0.147 3.853 15 N -0.609 5.609 16 C -0.257 4.257 17 H 0.082 0.918 18 C 0.025 3.975 19 N -0.913 5.913 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.311 1.311 23 H -0.275 1.275 24 C 0.145 3.855 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.260 0.740 45 H 0.013 0.987 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 14.365 1.341 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 H 0.050 0.950 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.069 4.069 8 N -0.254 5.254 9 C -0.064 4.064 10 C -0.133 4.133 11 H 0.108 0.892 12 C -0.143 4.143 13 C -0.173 4.173 14 C 0.021 3.979 15 N -0.332 5.332 16 C -0.385 4.385 17 H 0.100 0.900 18 C -0.174 4.174 19 N -0.556 5.556 20 Si 0.711 3.289 21 H -0.202 1.202 22 H -0.240 1.240 23 H -0.200 1.200 24 C 0.019 3.981 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.800 13.723 1.478 15.386 hybrid contribution 1.373 0.786 -0.322 1.615 sum 8.174 14.508 1.156 16.692 Atomic orbital electron populations 1.22145 0.94206 1.03764 1.00881 1.21579 0.95616 0.94328 0.90360 0.95040 1.21661 0.95109 1.02164 0.96342 1.21547 0.96198 1.00029 0.97776 1.21612 0.99171 1.00931 0.94090 1.22075 0.87848 0.98019 0.98916 1.61841 1.06212 1.55438 1.01937 1.22150 0.97145 0.95694 0.91369 1.22048 0.95369 0.97502 0.98351 0.89182 1.21430 0.97164 0.97798 0.97953 1.21976 0.96699 0.98109 1.00466 1.20907 0.95829 0.91276 0.89876 1.44406 1.24829 1.28031 1.35927 1.18904 0.93347 0.96878 1.29417 0.90025 1.25224 0.97722 0.96340 0.98073 1.69832 1.34842 1.24478 1.26472 0.86945 0.87289 0.75088 0.79579 1.20162 1.23978 1.19985 1.21217 0.87931 0.90825 0.98083 0.90154 0.92836 0.92402 0.91910 0.90524 0.92045 0.92756 0.90752 0.91980 0.91034 0.95587 0.94770 0.92012 0.93608 0.93038 0.92152 0.93087 0.92266 0.96405 0.93025 0.96886 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.51 37.16 0.28 -1.95 16 2 C 0.09 1.28 2.25 -67.72 -0.15 1.13 16 3 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -1.56 5.36 -26.66 -0.14 -1.70 16 5 C -0.12 -1.43 6.00 -26.62 -0.16 -1.59 16 6 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 7 C 0.06 0.84 5.34 -3.83 -0.02 0.82 16 8 N -0.53 -8.53 3.90 -226.69 -0.88 -9.41 16 9 C 0.06 1.01 4.08 -3.83 -0.02 0.99 16 10 C -0.11 -2.03 2.02 -90.50 -0.18 -2.21 16 11 H 0.09 1.72 4.29 -51.93 -0.22 1.49 16 12 C -0.11 -1.69 5.17 -26.68 -0.14 -1.83 16 13 C -0.13 -2.26 6.08 -26.61 -0.16 -2.43 16 14 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 15 N -0.61 -15.03 2.78 -172.32 -0.48 -15.51 16 16 C -0.26 -7.43 10.05 -15.06 -0.15 -7.58 16 17 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 18 C 0.02 0.74 5.25 -17.43 -0.09 0.65 16 19 N -0.91 -28.72 13.97 55.49 0.78 -27.95 16 20 Si 0.88 23.38 24.34 -169.99 -4.14 19.24 16 21 H -0.27 -7.06 6.71 56.52 0.38 -6.68 16 22 H -0.31 -8.43 7.11 56.52 0.40 -8.03 16 23 H -0.27 -7.25 6.40 56.52 0.36 -6.89 16 24 C 0.14 3.28 3.26 -3.72 -0.01 3.27 16 25 H 0.08 1.44 7.08 -51.93 -0.37 1.07 16 26 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.04 7.91 -51.93 -0.41 0.63 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.03 0.48 7.42 -51.93 -0.39 0.09 16 37 H 0.06 0.94 7.59 -51.93 -0.39 0.55 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 45 H 0.01 0.31 6.95 -51.93 -0.36 -0.05 16 46 H 0.08 2.12 4.20 -51.93 -0.22 1.90 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -31.16 330.05 -9.52 -40.68 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.63 Total: -0.82 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.14 Total: -11.20 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.59 Total: -52.87 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.14 Total: 19.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.16 -9.52 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.252 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds