Wall clock time and date at job start Mon Mar 30 2020 01:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46306 * 2 1 4 4 C 1.53030 * 109.46354 * 119.98107 * 2 1 3 5 5 C 1.53100 * 109.28954 * 179.19243 * 4 2 1 6 6 C 1.53113 * 109.15396 * 302.33428 * 5 4 2 7 7 C 1.53044 * 109.27914 * 57.65808 * 6 5 4 8 8 N 1.46848 * 109.52164 * 300.82048 * 7 6 5 9 9 C 1.46890 * 111.00364 * 185.83793 * 8 7 6 10 10 C 1.52998 * 109.47489 * 146.47036 * 9 8 7 11 11 H 1.08995 * 109.49690 * 56.76038 * 10 9 8 12 12 C 1.53045 * 109.49772 * 176.81954 * 10 9 8 13 13 C 1.53044 * 109.53691 * 181.31640 * 12 10 9 14 14 C 1.53192 * 109.31056 * 298.63790 * 13 12 10 15 15 N 1.46925 * 108.77665 * 54.63473 * 14 13 12 16 16 C 1.36937 * 120.62703 * 126.36921 * 15 14 13 17 17 H 1.08001 * 120.00239 * 332.80830 * 16 15 14 18 18 C 1.38817 * 120.00188 * 152.81370 * 16 15 14 19 19 N 1.31612 * 120.00627 * 160.25239 * 18 16 15 20 20 Si 1.86803 * 119.99387 * 340.25016 * 18 16 15 21 21 H 1.48487 * 109.47306 * 94.95841 * 20 18 16 22 22 H 1.48507 * 109.46646 * 214.96002 * 20 18 16 23 23 H 1.48503 * 109.47286 * 334.95189 * 20 18 16 24 24 C 1.46919 * 118.74084 * 306.38924 * 15 14 13 25 25 H 1.08998 * 109.47621 * 171.34378 * 1 2 3 26 26 H 1.09005 * 109.46730 * 291.34304 * 1 2 3 27 27 H 1.09005 * 109.47298 * 51.33704 * 1 2 3 28 28 H 1.09004 * 109.50592 * 299.11999 * 4 2 1 29 29 H 1.08997 * 109.50825 * 59.23815 * 4 2 1 30 30 H 1.09001 * 109.52667 * 182.43324 * 5 4 2 31 31 H 1.08999 * 109.57740 * 62.27458 * 5 4 2 32 32 H 1.08993 * 109.51102 * 297.71923 * 6 5 4 33 33 H 1.09006 * 109.50415 * 177.59249 * 6 5 4 34 34 H 1.08997 * 109.46533 * 180.80068 * 7 6 5 35 35 H 1.09006 * 109.45339 * 60.82424 * 7 6 5 36 36 H 1.08999 * 109.47432 * 266.47491 * 9 8 7 37 37 H 1.09007 * 109.47321 * 26.46736 * 9 8 7 38 38 H 1.08992 * 109.46366 * 301.33954 * 12 10 9 39 39 H 1.09004 * 109.45824 * 61.31133 * 12 10 9 40 40 H 1.08994 * 109.49731 * 58.58717 * 13 12 10 41 41 H 1.08996 * 109.49726 * 178.65257 * 13 12 10 42 42 H 1.09006 * 109.58379 * 174.42500 * 14 13 12 43 43 H 1.08996 * 109.59078 * 294.84508 * 14 13 12 44 44 H 0.96992 * 120.00320 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.58816 * 293.82292 * 24 15 14 46 46 H 1.09000 * 109.58778 * 173.39782 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2498 5 6 3.5708 -0.7364 1.2356 6 6 4.0545 -1.4193 -0.0466 7 6 3.4864 -0.6781 -1.2591 8 7 2.0192 -0.6918 -1.1994 9 6 1.4373 -0.1106 -2.4165 10 6 0.1242 -0.8238 -2.7449 11 1 -0.5518 -0.7518 -1.8929 12 6 -0.5223 -0.1667 -3.9666 13 6 -1.8520 -0.8583 -4.2761 14 6 -1.5927 -2.3329 -4.6005 15 7 -0.8425 -2.9364 -3.4907 16 6 -1.2985 -4.0723 -2.8766 17 1 -2.3557 -4.2930 -2.8656 18 6 -0.4020 -4.9401 -2.2682 19 7 -0.8264 -5.7981 -1.3649 20 14 1.4070 -4.8900 -2.7316 21 1 2.1397 -4.0244 -1.7731 22 1 1.9677 -6.2643 -2.6862 23 1 1.5514 -4.3416 -4.1041 24 6 0.4058 -2.2979 -3.0520 25 1 -0.3634 -1.0159 -0.1547 26 1 -0.3633 0.3740 0.9573 27 1 -0.3634 0.6420 -0.8025 28 1 1.6898 -0.1983 2.1399 29 1 1.6657 -1.7447 1.2575 30 1 3.9376 -1.2866 2.1021 31 1 3.9466 0.2863 1.2678 32 1 3.7120 -2.4539 -0.0594 33 1 5.1437 -1.3953 -0.0830 34 1 3.8174 -1.1703 -2.1735 35 1 3.8404 0.3529 -1.2530 36 1 1.2445 0.9502 -2.2563 37 1 2.1340 -0.2319 -3.2461 38 1 -0.7013 0.8882 -3.7595 39 1 0.1438 -0.2605 -4.8244 40 1 -2.5096 -0.7866 -3.4098 41 1 -2.3233 -0.3745 -5.1316 42 1 -2.5430 -2.8523 -4.7245 43 1 -1.0104 -2.4081 -5.5187 44 1 -0.2000 -6.4047 -0.9401 45 1 1.1512 -2.3702 -3.8440 46 1 0.7742 -2.7943 -2.1542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334331924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:01 Heat of formation + Delta-G solvation = -4.889273 kcal Electronic energy + Delta-G solvation = -22563.706317 eV Core-core repulsion = 19680.342379 eV Total energy + Delta-G solvation = -2883.363938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70103 -39.07247 -35.60385 -34.45993 -33.35604 -32.63906 -31.76163 -28.22786 -27.11875 -26.77017 -24.27137 -23.79495 -22.66031 -21.76636 -20.89052 -20.44710 -18.74382 -17.36900 -16.60608 -16.45627 -15.85973 -15.69197 -15.34619 -15.26426 -14.94325 -14.77857 -14.52311 -14.34129 -14.10496 -13.65288 -13.44324 -13.21832 -13.03038 -12.98586 -12.84785 -12.64453 -12.39976 -12.14998 -11.92332 -11.86047 -11.66093 -11.61988 -11.41546 -11.32265 -11.20508 -11.08143 -10.80384 -10.56454 -9.09051 -8.84310 -8.14320 -5.43689 1.37621 1.39065 1.48361 2.44988 2.94349 3.10616 3.43674 3.83641 3.89031 3.91805 4.05807 4.14489 4.19402 4.21849 4.33090 4.41998 4.45197 4.52662 4.58232 4.67605 4.70430 4.75628 4.77393 4.83840 4.85662 4.90183 4.95327 5.01292 5.03587 5.08194 5.09868 5.16988 5.21301 5.27951 5.32070 5.33929 5.40586 5.45416 5.52734 5.71067 5.91808 6.14957 6.30258 6.35265 6.98460 7.69732 8.10307 9.05602 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.008968 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.920502 B = 3121.554897 C = 4005.264215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.121 4.121 7 C 0.059 3.941 8 N -0.562 5.562 9 C 0.071 3.929 10 C -0.106 4.106 11 H 0.077 0.923 12 C -0.101 4.101 13 C -0.124 4.124 14 C 0.138 3.862 15 N -0.624 5.624 16 C -0.245 4.245 17 H 0.050 0.950 18 C -0.031 4.031 19 N -0.958 5.958 20 Si 0.947 3.053 21 H -0.269 1.269 22 H -0.319 1.319 23 H -0.270 1.270 24 C 0.146 3.854 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.259 0.741 45 H 0.009 0.991 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 17.986 0.624 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 H 0.073 0.927 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.069 4.069 8 N -0.288 5.288 9 C -0.057 4.057 10 C -0.126 4.126 11 H 0.095 0.905 12 C -0.139 4.139 13 C -0.163 4.163 14 C 0.014 3.986 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.067 0.933 18 C -0.226 4.226 19 N -0.605 5.605 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.249 1.249 23 H -0.195 1.195 24 C 0.022 3.978 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.403 17.390 0.731 19.327 hybrid contribution 0.763 -0.343 -0.113 0.844 sum 9.166 17.046 0.619 19.364 Atomic orbital electron populations 1.22059 0.94897 1.01182 1.02134 1.21615 0.94986 0.95269 0.89862 0.92738 1.21673 0.96400 1.00175 0.97153 1.21526 0.94874 1.01276 0.97306 1.21629 1.00560 0.98894 0.94837 1.22102 0.86782 0.99289 0.98701 1.61781 1.07551 1.56742 1.02687 1.22054 0.95616 0.96529 0.91510 1.21937 0.97049 0.94584 0.99067 0.90506 1.21427 0.96221 0.99217 0.97016 1.21878 0.97585 0.95431 1.01432 1.21142 0.94973 0.93597 0.88934 1.44587 1.25804 1.27283 1.37195 1.18873 0.92039 0.98134 1.28393 0.93255 1.25802 1.01612 0.96664 0.98496 1.69951 1.36132 1.26119 1.28271 0.85875 0.82674 0.74364 0.79323 1.19527 1.24876 1.19457 1.21149 0.86703 0.93661 0.96304 0.94525 0.91093 0.91639 0.89936 0.94254 0.91296 0.90445 0.94373 0.89676 0.91895 0.93173 0.92157 0.91459 0.90210 0.92135 0.93332 0.89534 0.93234 0.95299 0.93240 0.97264 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 7.51 71.98 0.54 -3.54 16 2 C 0.09 2.38 2.25 44.93 0.10 2.48 16 3 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.12 -3.00 5.36 30.64 0.16 -2.83 16 5 C -0.11 -2.46 6.00 30.67 0.18 -2.27 16 6 C -0.12 -3.06 6.09 30.65 0.19 -2.88 16 7 C 0.06 1.53 5.34 86.33 0.46 1.99 16 8 N -0.56 -17.10 3.90 -871.12 -3.40 -20.50 16 9 C 0.07 2.00 4.08 86.30 0.35 2.35 16 10 C -0.11 -3.63 2.02 -10.72 -0.02 -3.65 16 11 H 0.08 2.87 4.29 -2.39 -0.01 2.86 16 12 C -0.10 -2.85 5.17 30.62 0.16 -2.70 16 13 C -0.12 -3.89 6.08 30.67 0.19 -3.70 16 14 C 0.14 5.57 6.52 86.36 0.56 6.14 16 15 N -0.62 -31.10 2.78 -699.11 -1.94 -33.04 16 16 C -0.24 -14.68 10.05 84.03 0.84 -13.83 16 17 H 0.05 3.21 8.05 -2.91 -0.02 3.19 16 18 C -0.03 -1.94 5.25 84.86 0.45 -1.49 16 19 N -0.96 -63.07 13.97 21.65 0.30 -62.77 16 20 Si 0.95 50.56 24.34 68.60 1.67 52.23 16 21 H -0.27 -13.92 6.71 99.48 0.67 -13.25 16 22 H -0.32 -17.26 7.11 99.48 0.71 -16.55 16 23 H -0.27 -13.95 6.40 99.48 0.64 -13.32 16 24 C 0.15 6.58 3.26 86.36 0.28 6.86 16 25 H 0.04 1.34 7.08 -2.39 -0.02 1.32 16 26 H 0.07 1.68 8.13 -2.38 -0.02 1.66 16 27 H 0.06 1.69 6.18 -2.38 -0.01 1.68 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.06 1.71 7.91 -2.39 -0.02 1.69 16 35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 1.40 7.42 -2.39 -0.02 1.39 16 37 H 0.07 1.82 7.59 -2.38 -0.02 1.80 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 2.04 7.93 -2.38 -0.02 2.02 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 45 H 0.01 0.43 6.95 -2.39 -0.02 0.41 16 46 H 0.05 2.70 4.20 -2.39 -0.01 2.69 16 Total: -1.00 -70.83 330.05 1.88 -68.95 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.80 Total: 12.20 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.45 Total: -17.08 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.04 Total: -116.31 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.67 Total: 52.23 kcal Total: -70.83 1.88 -68.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.063 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds