Wall clock time and date at job start Mon Mar 30 2020 01:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46599 * 2 1 4 4 C 1.53039 * 109.46559 * 240.02233 * 2 1 3 5 5 C 1.53119 * 109.28328 * 180.80401 * 4 2 1 6 6 C 1.53123 * 109.15888 * 57.65328 * 5 4 2 7 7 C 1.53036 * 109.27804 * 302.34891 * 6 5 4 8 8 N 1.46848 * 109.46389 * 119.98118 * 2 1 3 9 9 C 1.46899 * 110.99992 * 305.85545 * 8 2 1 10 10 C 1.52994 * 109.47544 * 165.58154 * 9 8 2 11 11 H 1.09005 * 109.50003 * 54.93314 * 10 9 8 12 12 C 1.53035 * 109.50145 * 175.00050 * 10 9 8 13 13 C 1.53048 * 109.53859 * 181.31688 * 12 10 9 14 14 C 1.53188 * 109.31028 * 298.63310 * 13 12 10 15 15 N 1.46926 * 108.77548 * 54.63580 * 14 13 12 16 16 C 1.36939 * 120.62904 * 126.40792 * 15 14 13 17 17 H 1.07996 * 120.00128 * 209.20004 * 16 15 14 18 18 C 1.38818 * 120.00203 * 29.20496 * 16 15 14 19 19 N 1.31617 * 119.99505 * 13.65909 * 18 16 15 20 20 Si 1.86800 * 120.00204 * 193.65931 * 18 16 15 21 21 H 1.48496 * 109.46884 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46849 * 120.00045 * 20 18 16 23 23 H 1.48493 * 109.47170 * 239.99752 * 20 18 16 24 24 C 1.46923 * 118.74060 * 306.39240 * 15 14 13 25 25 H 1.08994 * 109.47123 * 187.02129 * 1 2 3 26 26 H 1.09002 * 109.46765 * 67.01717 * 1 2 3 27 27 H 1.08997 * 109.47157 * 307.01837 * 1 2 3 28 28 H 1.08997 * 109.50355 * 300.74745 * 4 2 1 29 29 H 1.09007 * 109.50092 * 60.82590 * 4 2 1 30 30 H 1.08989 * 109.52420 * 177.56244 * 5 4 2 31 31 H 1.09004 * 109.52035 * 297.68839 * 5 4 2 32 32 H 1.08996 * 109.50091 * 62.28518 * 6 5 4 33 33 H 1.08990 * 109.50331 * 182.36544 * 6 5 4 34 34 H 1.09001 * 109.46106 * 179.19213 * 7 6 5 35 35 H 1.08999 * 109.46543 * 299.16962 * 7 6 5 36 36 H 1.09005 * 109.47156 * 285.58141 * 9 8 2 37 37 H 1.09001 * 109.47238 * 45.58061 * 9 8 2 38 38 H 1.08995 * 109.46100 * 301.33843 * 12 10 9 39 39 H 1.08994 * 109.46360 * 61.29642 * 12 10 9 40 40 H 1.08998 * 109.49501 * 58.58965 * 13 12 10 41 41 H 1.09004 * 109.49202 * 178.65149 * 13 12 10 42 42 H 1.09000 * 109.58532 * 174.42258 * 14 13 12 43 43 H 1.08998 * 109.58943 * 294.70567 * 14 13 12 44 44 H 0.97008 * 119.99719 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58189 * 293.81728 * 24 15 14 46 46 H 1.09004 * 109.58685 * 173.40049 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5710 -0.7361 -1.2356 6 6 4.0549 -1.4188 0.0468 7 6 3.4865 -0.6776 1.2591 8 7 2.0193 -0.6919 1.1993 9 6 1.4373 -0.1109 2.4165 10 6 1.6718 -1.0569 3.5958 11 1 2.7367 -1.2730 3.6828 12 6 1.1773 -0.3981 4.8855 13 6 1.4414 -1.3302 6.0703 14 6 0.6689 -2.6375 5.8683 15 7 1.0317 -3.2042 4.5622 16 6 1.4817 -4.4936 4.4618 17 1 2.1635 -4.7675 3.6702 18 6 1.0616 -5.4487 5.3774 19 7 0.0399 -5.1976 6.1681 20 14 1.9464 -7.0902 5.4872 21 1 3.0526 -7.1234 4.4970 22 1 2.4996 -7.2638 6.8543 23 1 0.9899 -8.1884 5.1971 24 6 0.9021 -2.3613 3.3658 25 1 -0.3633 -1.0199 0.1256 26 1 -0.3633 0.4013 -0.9461 27 1 -0.3633 0.6187 0.8205 28 1 1.6660 -1.7447 -1.2575 29 1 1.6890 -0.1986 -2.1400 30 1 3.9380 -1.2863 -2.1019 31 1 3.9457 0.2870 -1.2684 32 1 3.7125 -2.4535 0.0596 33 1 5.1439 -1.3953 0.0829 34 1 3.8175 -1.1697 2.1736 35 1 3.8402 0.3534 1.2531 36 1 1.9094 0.8499 2.6221 37 1 0.3664 0.0336 2.2740 38 1 1.7062 0.5426 5.0386 39 1 0.1076 -0.2044 4.8073 40 1 2.5083 -1.5440 6.1342 41 1 1.1108 -0.8502 6.9914 42 1 0.9305 -3.3422 6.6577 43 1 -0.4021 -2.4374 5.8974 44 1 -0.2535 -5.8649 6.8082 45 1 -0.1500 -2.1382 3.1883 46 1 1.3174 -2.8837 2.5040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334331925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:04 Heat of formation + Delta-G solvation = 3.450466 kcal Electronic energy + Delta-G solvation = -21868.691532 eV Core-core repulsion = 18985.689232 eV Total energy + Delta-G solvation = -2883.002300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.42292 -37.32474 -34.11438 -32.81672 -32.23958 -30.26552 -29.87236 -27.04741 -25.38226 -25.11482 -23.09359 -21.90903 -21.36468 -20.36283 -19.49463 -18.81058 -16.52913 -15.82145 -15.24470 -14.80845 -14.41467 -14.30634 -14.11336 -13.73911 -13.41861 -13.31026 -13.10082 -12.53599 -12.31685 -12.07160 -11.96710 -11.81975 -11.76533 -11.53163 -11.17088 -10.93238 -10.86953 -10.72769 -10.62813 -10.46803 -10.18805 -10.10083 -10.04073 -9.87832 -9.68109 -9.34612 -9.25672 -8.36809 -8.01585 -6.49687 -5.66498 -3.10208 3.43126 3.50529 3.53070 4.02101 4.58603 4.80096 4.83244 4.93527 5.13021 5.31525 5.39528 5.43466 5.48970 5.51207 5.59300 5.62784 5.68802 5.75138 5.80590 5.85258 5.88815 5.92466 5.96228 5.99966 6.10791 6.19160 6.20754 6.25104 6.34609 6.42527 6.46841 6.52867 6.59048 6.78892 6.82142 7.00046 7.15493 7.21361 7.38001 7.41181 7.54312 7.81686 7.91066 8.59634 9.35311 9.99409 10.56846 11.41641 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.005594 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.619180 B = 5004.426236 C = 5693.405717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 H 0.032 0.968 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.117 4.117 7 C 0.056 3.944 8 N -0.526 5.526 9 C 0.059 3.941 10 C -0.098 4.098 11 H 0.064 0.936 12 C -0.103 4.103 13 C -0.141 4.141 14 C 0.170 3.830 15 N -0.594 5.594 16 C -0.242 4.242 17 H 0.064 0.936 18 C -0.001 4.001 19 N -0.907 5.907 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.166 3.834 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.014 0.986 44 H 0.251 0.749 45 H 0.010 0.990 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 12.317 -11.110 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 H 0.050 0.950 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.250 5.250 9 C -0.068 4.068 10 C -0.119 4.119 11 H 0.083 0.917 12 C -0.141 4.141 13 C -0.180 4.180 14 C 0.044 3.956 15 N -0.317 5.317 16 C -0.372 4.372 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.553 5.553 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.040 3.960 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.033 0.967 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.161 11.698 -11.036 16.612 hybrid contribution 0.671 0.066 0.246 0.717 sum 4.831 11.764 -10.790 16.678 Atomic orbital electron populations 1.21935 0.94515 1.03105 1.01098 1.21559 0.95276 0.94867 0.90828 0.95039 1.21627 0.95346 1.01683 0.96251 1.21568 0.95990 1.00208 0.97956 1.21579 0.99341 1.00712 0.93870 1.22090 0.87660 0.98120 0.99275 1.61887 1.06689 1.54884 1.01588 1.22270 0.99813 0.95105 0.89660 1.21659 1.00998 0.97038 0.92167 0.91718 1.21412 1.00003 0.97102 0.95589 1.22175 1.01160 0.98864 0.95850 1.20769 0.94374 0.90958 0.89535 1.44093 1.76731 1.10019 1.00814 1.19245 1.19876 0.84869 1.13204 0.91800 1.25068 0.96626 0.97504 1.00717 1.70020 1.25440 1.34480 1.25320 0.86242 0.79130 0.84156 0.77411 1.20320 1.21733 1.21819 1.20769 0.95258 0.89586 0.90426 0.91200 0.92618 0.92560 0.90852 0.92090 0.92128 0.92765 0.90765 0.91982 0.90111 0.95783 0.95932 0.90483 0.94233 0.92944 0.93020 0.93615 0.89577 0.96749 0.93889 0.97220 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.57 37.16 0.32 -1.38 16 2 C 0.08 1.00 2.44 -67.72 -0.17 0.84 16 3 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.11 -1.21 5.37 -26.65 -0.14 -1.35 16 5 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 6 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 7 C 0.06 0.75 5.31 -3.83 -0.02 0.73 16 8 N -0.53 -7.45 4.03 -226.69 -0.91 -8.37 16 9 C 0.06 0.88 4.14 -3.83 -0.02 0.87 16 10 C -0.10 -1.76 2.33 -90.51 -0.21 -1.97 16 11 H 0.06 1.23 6.41 -51.93 -0.33 0.90 16 12 C -0.10 -1.81 5.17 -26.69 -0.14 -1.95 16 13 C -0.14 -2.82 6.08 -26.61 -0.16 -2.98 16 14 C 0.17 4.20 5.28 -3.71 -0.02 4.18 16 15 N -0.59 -15.39 2.99 -172.32 -0.52 -15.91 16 16 C -0.24 -6.84 9.59 -15.06 -0.14 -6.98 16 17 H 0.06 1.79 7.87 -52.49 -0.41 1.38 16 18 C 0.00 -0.04 4.99 -17.43 -0.09 -0.13 16 19 N -0.91 -27.02 11.07 55.49 0.61 -26.40 16 20 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C 0.17 3.63 5.62 -3.71 -0.02 3.61 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.64 6.45 -51.93 -0.33 0.30 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.94 -0.42 0.14 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.08 1.13 5.61 -51.93 -0.29 0.84 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 1.39 7.72 -51.93 -0.40 0.99 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -29.48 339.03 -10.60 -40.07 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.73 Total: -2.26 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.13 Total: -9.47 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.82 Total: -50.68 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.48 -10.60 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.525 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds