Wall clock time and date at job start Mon Mar 30 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46599 * 2 1 4 4 C 1.53039 * 109.46559 * 240.02233 * 2 1 3 5 5 C 1.53119 * 109.28328 * 180.80401 * 4 2 1 6 6 C 1.53123 * 109.15888 * 57.65328 * 5 4 2 7 7 C 1.53036 * 109.27804 * 302.34891 * 6 5 4 8 8 N 1.46848 * 109.46389 * 119.98118 * 2 1 3 9 9 C 1.46899 * 110.99992 * 305.85545 * 8 2 1 10 10 C 1.52994 * 109.47544 * 165.58154 * 9 8 2 11 11 H 1.09005 * 109.50003 * 54.93314 * 10 9 8 12 12 C 1.53035 * 109.50145 * 175.00050 * 10 9 8 13 13 C 1.53048 * 109.53859 * 181.31688 * 12 10 9 14 14 C 1.53188 * 109.31028 * 298.63310 * 13 12 10 15 15 N 1.46926 * 108.77548 * 54.63580 * 14 13 12 16 16 C 1.36939 * 120.62904 * 126.40792 * 15 14 13 17 17 H 1.07996 * 120.00128 * 209.20004 * 16 15 14 18 18 C 1.38818 * 120.00203 * 29.20496 * 16 15 14 19 19 N 1.31617 * 119.99505 * 13.65909 * 18 16 15 20 20 Si 1.86800 * 120.00204 * 193.65931 * 18 16 15 21 21 H 1.48496 * 109.46884 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46849 * 120.00045 * 20 18 16 23 23 H 1.48493 * 109.47170 * 239.99752 * 20 18 16 24 24 C 1.46923 * 118.74060 * 306.39240 * 15 14 13 25 25 H 1.08994 * 109.47123 * 187.02129 * 1 2 3 26 26 H 1.09002 * 109.46765 * 67.01717 * 1 2 3 27 27 H 1.08997 * 109.47157 * 307.01837 * 1 2 3 28 28 H 1.08997 * 109.50355 * 300.74745 * 4 2 1 29 29 H 1.09007 * 109.50092 * 60.82590 * 4 2 1 30 30 H 1.08989 * 109.52420 * 177.56244 * 5 4 2 31 31 H 1.09004 * 109.52035 * 297.68839 * 5 4 2 32 32 H 1.08996 * 109.50091 * 62.28518 * 6 5 4 33 33 H 1.08990 * 109.50331 * 182.36544 * 6 5 4 34 34 H 1.09001 * 109.46106 * 179.19213 * 7 6 5 35 35 H 1.08999 * 109.46543 * 299.16962 * 7 6 5 36 36 H 1.09005 * 109.47156 * 285.58141 * 9 8 2 37 37 H 1.09001 * 109.47238 * 45.58061 * 9 8 2 38 38 H 1.08995 * 109.46100 * 301.33843 * 12 10 9 39 39 H 1.08994 * 109.46360 * 61.29642 * 12 10 9 40 40 H 1.08998 * 109.49501 * 58.58965 * 13 12 10 41 41 H 1.09004 * 109.49202 * 178.65149 * 13 12 10 42 42 H 1.09000 * 109.58532 * 174.42258 * 14 13 12 43 43 H 1.08998 * 109.58943 * 294.70567 * 14 13 12 44 44 H 0.97008 * 119.99719 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58189 * 293.81728 * 24 15 14 46 46 H 1.09004 * 109.58685 * 173.40049 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5710 -0.7361 -1.2356 6 6 4.0549 -1.4188 0.0468 7 6 3.4865 -0.6776 1.2591 8 7 2.0193 -0.6919 1.1993 9 6 1.4373 -0.1109 2.4165 10 6 1.6718 -1.0569 3.5958 11 1 2.7367 -1.2730 3.6828 12 6 1.1773 -0.3981 4.8855 13 6 1.4414 -1.3302 6.0703 14 6 0.6689 -2.6375 5.8683 15 7 1.0317 -3.2042 4.5622 16 6 1.4817 -4.4936 4.4618 17 1 2.1635 -4.7675 3.6702 18 6 1.0616 -5.4487 5.3774 19 7 0.0399 -5.1976 6.1681 20 14 1.9464 -7.0902 5.4872 21 1 3.0526 -7.1234 4.4970 22 1 2.4996 -7.2638 6.8543 23 1 0.9899 -8.1884 5.1971 24 6 0.9021 -2.3613 3.3658 25 1 -0.3633 -1.0199 0.1256 26 1 -0.3633 0.4013 -0.9461 27 1 -0.3633 0.6187 0.8205 28 1 1.6660 -1.7447 -1.2575 29 1 1.6890 -0.1986 -2.1400 30 1 3.9380 -1.2863 -2.1019 31 1 3.9457 0.2870 -1.2684 32 1 3.7125 -2.4535 0.0596 33 1 5.1439 -1.3953 0.0829 34 1 3.8175 -1.1697 2.1736 35 1 3.8402 0.3534 1.2531 36 1 1.9094 0.8499 2.6221 37 1 0.3664 0.0336 2.2740 38 1 1.7062 0.5426 5.0386 39 1 0.1076 -0.2044 4.8073 40 1 2.5083 -1.5440 6.1342 41 1 1.1108 -0.8502 6.9914 42 1 0.9305 -3.3422 6.6577 43 1 -0.4021 -2.4374 5.8974 44 1 -0.2535 -5.8649 6.8082 45 1 -0.1500 -2.1382 3.1883 46 1 1.3174 -2.8837 2.5040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334331925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:03 Heat of formation + Delta-G solvation = -12.650776 kcal Electronic energy + Delta-G solvation = -21869.389734 eV Core-core repulsion = 18985.689232 eV Total energy + Delta-G solvation = -2883.700502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53787 -38.92724 -35.63841 -34.23013 -33.37785 -32.22832 -31.39763 -28.01816 -27.19554 -26.61184 -24.29542 -23.71216 -22.52011 -21.75660 -20.51268 -20.39521 -18.59752 -16.89023 -16.84709 -16.32728 -15.76017 -15.64697 -15.27088 -15.14654 -14.92978 -14.64074 -14.35699 -14.31622 -13.80895 -13.51148 -13.21357 -12.98921 -12.86514 -12.79010 -12.74358 -12.67979 -12.46603 -12.17912 -11.91882 -11.88134 -11.73865 -11.57444 -11.55647 -11.26996 -11.04088 -10.97517 -10.86209 -10.52414 -9.08522 -8.60009 -7.83581 -5.31279 1.45221 1.45999 1.57384 2.52208 2.97771 3.30145 3.71361 3.89712 3.93194 3.98850 4.09823 4.19386 4.23303 4.27977 4.41851 4.48295 4.48787 4.60464 4.62552 4.71302 4.80330 4.81424 4.90235 4.94779 4.97514 5.03193 5.03656 5.06046 5.10671 5.14618 5.17417 5.28393 5.30713 5.36327 5.42604 5.45809 5.50914 5.56405 5.60788 5.68946 5.82756 6.29428 6.37441 6.44345 7.19192 7.92032 8.43567 9.22052 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.005594 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.619180 B = 5004.426236 C = 5693.405717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.042 0.958 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.116 4.116 7 C 0.057 3.943 8 N -0.545 5.545 9 C 0.069 3.931 10 C -0.085 4.085 11 H 0.054 0.946 12 C -0.098 4.098 13 C -0.131 4.131 14 C 0.175 3.825 15 N -0.613 5.613 16 C -0.255 4.255 17 H 0.060 0.940 18 C -0.053 4.053 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.291 1.291 24 C 0.171 3.829 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.051 0.949 43 H -0.008 1.008 44 H 0.249 0.751 45 H -0.001 1.001 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 14.145 -12.379 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.060 0.940 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.070 4.070 8 N -0.271 5.271 9 C -0.059 4.059 10 C -0.106 4.106 11 H 0.073 0.927 12 C -0.136 4.136 13 C -0.170 4.170 14 C 0.049 3.951 15 N -0.336 5.336 16 C -0.386 4.386 17 H 0.078 0.922 18 C -0.248 4.248 19 N -0.585 5.585 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.218 1.218 24 C 0.046 3.954 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.010 0.990 44 H 0.058 0.942 45 H 0.017 0.983 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.255 13.552 -12.328 19.059 hybrid contribution 0.300 -0.513 0.609 0.851 sum 5.555 13.039 -11.720 18.391 Atomic orbital electron populations 1.21915 0.94240 1.01894 1.02318 1.21642 0.95501 0.95206 0.90195 0.94034 1.21633 0.95791 1.00790 0.96563 1.21547 0.95506 1.00840 0.97347 1.21567 1.00121 0.99408 0.94293 1.22065 0.87306 0.98687 0.98986 1.61855 1.07262 1.55838 1.02125 1.22093 1.00271 0.94720 0.88787 1.21462 0.99424 0.95523 0.94164 0.92743 1.21383 1.00641 0.97699 0.93862 1.22011 0.99876 0.96849 0.98255 1.20602 0.93716 0.92566 0.88227 1.44372 1.76841 1.10032 1.02335 1.19512 1.19749 0.86225 1.13114 0.92212 1.25825 0.97410 1.00937 1.00606 1.70181 1.26848 1.35495 1.25965 0.85213 0.78094 0.79793 0.77435 1.19257 1.21494 1.21807 1.20778 0.95090 0.90950 0.88562 0.93330 0.90499 0.92515 0.92628 0.89968 0.90952 0.91531 0.92971 0.90639 0.92223 0.94553 0.94124 0.90239 0.90751 0.92704 0.93505 0.91354 0.93024 0.98993 0.94212 0.98294 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.57 71.98 0.62 -2.47 16 2 C 0.08 1.81 2.44 44.94 0.11 1.92 16 3 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -2.16 5.37 30.65 0.16 -2.00 16 5 C -0.11 -2.10 6.00 30.68 0.18 -1.91 16 6 C -0.12 -2.60 6.09 30.65 0.19 -2.41 16 7 C 0.06 1.46 5.31 86.33 0.46 1.91 16 8 N -0.55 -14.79 4.03 -871.11 -3.51 -18.30 16 9 C 0.07 1.93 4.14 86.30 0.36 2.29 16 10 C -0.09 -2.98 2.33 -10.72 -0.02 -3.01 16 11 H 0.05 2.04 6.41 -2.38 -0.02 2.02 16 12 C -0.10 -3.24 5.17 30.62 0.16 -3.08 16 13 C -0.13 -5.12 6.08 30.67 0.19 -4.94 16 14 C 0.17 8.90 5.28 86.36 0.46 9.35 16 15 N -0.61 -32.65 2.99 -699.11 -2.09 -34.74 16 16 C -0.26 -14.84 9.59 84.03 0.81 -14.04 16 17 H 0.06 3.44 7.87 -2.91 -0.02 3.42 16 18 C -0.05 -3.09 4.99 84.86 0.42 -2.67 16 19 N -0.94 -57.61 11.07 21.65 0.24 -57.37 16 20 Si 0.97 46.63 29.58 68.60 2.03 48.66 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 C 0.17 7.66 5.62 86.36 0.49 8.14 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.18 6.45 -2.39 -0.02 1.16 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.75 6.33 -2.39 -0.02 1.73 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.04 1.01 8.08 -2.38 -0.02 0.99 16 37 H 0.08 2.19 5.61 -2.39 -0.01 2.18 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 2.97 6.03 -2.39 -0.01 2.95 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 45 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.05 2.19 7.72 -2.39 -0.02 2.17 16 Total: -1.00 -65.05 339.03 2.14 -62.91 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.90 Total: 11.74 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.57 Total: -12.90 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -5.36 Total: -110.41 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -65.05 2.14 -62.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.263 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds